cluster # 8703

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Oryza sativa
cluster # 8703 cluster # 8703 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8703#0 length = 705 sequences # 3

consensus_8703#1 length = 395 sequences # 1
consensus_8703#2 length = 297 sequences # 1

consensusID : consensus_8703#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 705
fasta sequence

                              [GGCGACAGCTCCAGCAACAGCAACAGCACGGCGTGGACATGCGGCAGCGTCGTCGTCGGCGGCGCGGGCGAGCTGCCGCCGCCGCCGCTGCTGCCGCACATGGACATGTTCGGCCGGGTCGACGCCGAGCCGCCGCCGTACCCGCCGTTCGACGTCCAGGCCAGGTTCAGCCCCTGGCACCACCACCACCACCACCACCACGAGCCGACGCTGCCGACGCCGCCGCAAAGGTTGGACGGCGGCGGCGGCGCCGCGGCGAGCTTCCCGATCC-GGTCGCTGTCGCGGGACATGCCGGAGTCCTGCTTCGACCTCGGCCGCGGCGCGCTCGACGACGAGTTCGGCGTCGACTTCCTCTGACCTCTCGAGATCGCAAGCGCGTGCAAGTGTAACCGGACACGTCACACG-GCCACGTATACGCATGGACCACGCTGTCTGCCACGGAAGATCGACGGTCAGAAGAGACGACACGTGTCAGGAATCGGACGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCACACTTTTTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTGGTATAGCAGTGCGTGTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTTTTCGCCAGAATAGCTATATACATATATACATTTGATGAAATTATTAATTTTCAAACG]

[+] EMBL AK065915             [GGCGACAGCTCCAGCAACAGCAACAGCACGGCGTGGACATGCGGCAGCGTCGTCGTCGGCGGCGCGGGCGAGCTGCCGCCGCCGCCGCTGCTGCCGCACATGGACATGTTCGGCCGGGTCGACGCCGAGCCGCCGCCGTACCCGCCGTTCGACGTCCAGGCCAGGTTCAGCCCCTGGCACCACCACCACCACCACCACCACGAGCCGACGCTGCCGACGCCGCCGCAAAGGTTGGACGGCGGCGGCGGCGCCGCGGCGAGCTTCCCGATCC GGTCGCTGTCGCGGGACATGCCGGAGTCCTGCTTCGACCTCGGCCGCGGCGCGCTCGACGACGAGTTCGGCGTCGACTTCCTCTGACCTCTCGAGATCGCAAGCGCGTGCAAGTGTAACCGGACACGTAACACG GCCACGTATACGCATGGACCACGCTGTCTGCCACGGAAGATCGACGGTCAGAAGAGACGACACGTGTCAGGAATCGGACGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCACACTTTTTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTGGTATAGCAGTGC  GTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTTTTCGCCAGAATAGCTATATACATATATACATTTGATGAAATT               ]
[-] EMBL C99554               [                                                                                                                                                                                                CACCACCACGAGCCGACGCTGCCGACGCCGCCGCAAAGGCTGGACGGC GC GCGGCGCCGCGNCGAGCTTCCCGATCCGGGTCG TGTCGCGGGACATGCCGGAGTCCTGCTTCGACCTCGG CNCGGCGCGCTCGACGACGAGTTCGGCGTCGACTTCCTCTGACCTCTCGAGATCGCAAGCGCGTGCAAGTGTAACCGGACACGTCACACG GCCACGTATACGCATGGACCACGCTGTCTGCCACGGAAGATCGACGGTCAGAAGAGACGACACGTGTCAGGAATCGGACGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCACACTTTTTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTGGTATAGCAGTGCGTGTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTTTTCGCCAGAATAGCTATATACATATATACATTTGATGAAATTATTAATTTTCAAACG]
[+] EMBL AU077894             [                                                                                                                                                                                                                                                                                                                                                                                                       CGGACACGTCACNCGNGCCACGTATACGCATGGACCACGCTGTCTGCCACGGAAGATCGACGGTCAGAAGAGACGACACGTGTCAGGAATCGGACGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCACACTTTTTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTGGTATAGCAGTGCGTGTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTTTTCGCCAGAATAGCTATATACATATATACATTTGATGAAAaaaaaaaa         ]




>consensus_8703#0
GGCGACAGCTCCAGCAACAGCAACAGCACGGCGTGGACATGCGGCAGCGTCGTCGTCGGC
GGCGCGGGCGAGCTGCCGCCGCCGCCGCTGCTGCCGCACATGGACATGTTCGGCCGGGTC
GACGCCGAGCCGCCGCCGTACCCGCCGTTCGACGTCCAGGCCAGGTTCAGCCCCTGGCAC
CACCACCACCACCACCACCACGAGCCGACGCTGCCGACGCCGCCGCAAAGGTTGGACGGC
GGCGGCGGCGCCGCGGCGAGCTTCCCGATCCGGTCGCTGTCGCGGGACATGCCGGAGTCC
TGCTTCGACCTCGGCCGCGGCGCGCTCGACGACGAGTTCGGCGTCGACTTCCTCTGACCT
CTCGAGATCGCAAGCGCGTGCAAGTGTAACCGGACACGTCACACGGCCACGTATACGCAT
GGACCACGCTGTCTGCCACGGAAGATCGACGGTCAGAAGAGACGACACGTGTCAGGAATC
GGACGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCACACTTT
TTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTGGTATAGCAGTGC
GTGTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTTTTCGCCAGAATA
GCTATATACATATATACATTTGATGAAATTATTAATTTTCAAACG

consensusID : consensus_8703#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [CCGTGAAAANTTGTAACCCGGGNACACCGGTCACCACGGNCCACCGTAATACGGCAATGGGACCCAACGGCTTGTCCTGGCCCACCGGGAAAGATCGACGGTCAAGAAGAGACGACACGTGTCAGGAATCGGGACGGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCACACTTTTTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTGGTATAGCAGTGCGTGTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTTTTCGCCAGAATAGCTATATACATATATACATTTGATGAAATTATTAATTTTCAAACNGACTGANATNNANAATNATCTCTNANANNANNANNACC]

[-] EMBL AU064283             [CCGTGAAAANTTGTAACCCGGGNACACCGGTCACCACGGNCCACCGTAATACGGCAATGGGACCCAACGGCTTGTCCTGGCCCACCGGGAAAGATCGACGGTCAAGAAGAGACGACACGTGTCAGGAATCGGGACGGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCACACTTTTTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTGGTATAGCAGTGCGTGTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTTTTCGCCAGAATAGCTATATACATATATACATTTGATGAAATTATTAATTTTCAAACNGACTGANATNNANAATNATCTCTNANANNANNANNACC]




>consensus_8703#1
CCGTGAAAANTTGTAACCCGGGNACACCGGTCACCACGGNCCACCGTAATACGGCAATGG
GACCCAACGGCTTGTCCTGGCCCACCGGGAAAGATCGACGGTCAAGAAGAGACGACACGT
GTCAGGAATCGGGACGGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTA
CTCGCACACTTTTTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTG
GTATAGCAGTGCGTGTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTT
TTCGCCAGAATAGCTATATACATATATACATTTGATGAAATTATTAATTTTCAAACNGAC
TGANATNNANAATNATCTCTNANANNANNANNACC

consensusID : consensus_8703#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 297
fasta sequence

                              [TATACGCATGGACCACGCTGTCTGCCACGGAAGATCGACGGTCAGAAGAGACGACACGTGTCAGGAANCGGACGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCACACNTTTTTTATTATTATTGGACTAAGTTGNTCAANTAATTAACTCTTTCTTTGGTATAGCAGTGCGTGTGTGTGCGCATAATAAGGGTTANATATATATATGCTCAAATGTTTTTCGCCAGAATAGCNTNATACATATATACATTTGATGAAAAAAAAAAAAAAAAAANANAG]

[+] EMBL AU058105             [TATACGCATGGACCACGCTGTCTGCCACGGAAGATCGACGGTCAGAAGAGACGACACGTGTCAGGAANCGGACGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCACACNTTTTTTATTATTATTGGACTAAGTTGNTCAANTAATTAACTCTTTCTTTGGTATAGCAGTGCGTGTGTGTGCGCATAATAAGGGTTANATATATATATGCTCAAATGTTTTTCGCCAGAATAGCNTNATACATATATACATTTGATGAAAAAAAAAAAAAAAAAANANAG]




>consensus_8703#2
TATACGCATGGACCACGCTGTCTGCCACGGAAGATCGACGGTCAGAAGAGACGACACGTG
TCAGGAANCGGACGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTC
GCACACNTTTTTTATTATTATTGGACTAAGTTGNTCAANTAATTAACTCTTTCTTTGGTA
TAGCAGTGCGTGTGTGTGCGCATAATAAGGGTTANATATATATATGCTCAAATGTTTTTC
GCCAGAATAGCNTNATACATATATACATTTGATGAAAAAAAAAAAAAAAAAANANAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8703#0      GGCGACAGCTCCAGCAACAGCAACAGCACGGCGTGGACATGCGGCAGCGTCGTCGTCGGC 60
consensus_8703#2      ------------------------------------------------------------
consensus_8703#1      ------------------------------------------------------------
                                                                                  

consensus_8703#0      GGCGCGGGCGAGCTGCCGCCGCCGCCGCTGCTGCCGCACATGGACATGTTCGGCCGGGTC 120
consensus_8703#2      ------------------------------------------------------------
consensus_8703#1      ------------------------------------------------------------
                                                                                  

consensus_8703#0      GACGCCGAGCCGCCGCCGTACCCGCCGTTCGACGTCCAGGCCAGGTTCAGCCCCTGGCAC 180
consensus_8703#2      ------------------------------------------------------------
consensus_8703#1      ------------------------------------------------------------
                                                                                  

consensus_8703#0      CACCACCACCACCACCACCACGAGCCGACGCTGCCGACGCCGCCGCAAAGGTTGGACGGC 240
consensus_8703#2      ------------------------------------------------------------
consensus_8703#1      ------------------------------------------------------------
                                                                                  

consensus_8703#0      GGCGGCGGCGCCGCGGCGAGCTTCCCGATCCGGTCGCTGTCGCGGGACATGCCGGAGTCC 300
consensus_8703#2      ------------------------------------------------------------
consensus_8703#1      ------------------------------------------------------------
                                                                                  

consensus_8703#0      TGCTTCGACCTCGGCCGCGGCGCGCTCGACGACGAGTTCGGCGTCGACTTCCTCTGACCT 360
consensus_8703#2      ------------------------------------------------------------
consensus_8703#1      ---------------------------------------------------CCGTGAAAA 9
                                                                                  

consensus_8703#0      CTCGAGATCGCAAGCGCGTGCAAGTGTAACCGGACAC-GTCACACGGCCACGTATACGCA 419
consensus_8703#2      ----------------------------------------------------TATACGCA 8
consensus_8703#1      NTTGTAACC-CGGGNACAC-CGGTCACCACGGNCCACCGTAATACGGCAATGGGACCCAA 67
                                                                              *  *

consensus_8703#0      TGGACCACGCTG-TCTGCCACGGAAGATCGACGGTCA-GAAGAGACGACACGTGTCAGGA 477
consensus_8703#2      TGGACCACGCTG-TCTGCCACGGAAGATCGACGGTCA-GAAGAGACGACACGTGTCAGGA 66
consensus_8703#1      CGGCTTGTCCTGGCCCACCGGGAAAGATCGACGGTCAAGAAGAGACGACACGTGTCAGGA 127
                       **      ***  *  **  * ************** **********************

consensus_8703#0      ATCGGAC--GGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCAC 535
consensus_8703#2      ANCGGAC--GGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCAC 124
consensus_8703#1      ATCGGGACGGGTTCTCGCACCGTTGTGGTTACATATACTTACAATCCCCACTACTCGCAC 187
                      * ***    ***************************************************

consensus_8703#0      ACTTTTTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTGGTATAGC 595
consensus_8703#2      ACNTTTTTTATTATTATTGGACTAAGTTGNTCAANTAATTAACTCTTTCTTTGGTATAGC 184
consensus_8703#1      ACTTTTTTTATTATTATTGGACTAAGTTGTTCAATTAATTAACTCTTTCTTTGGTATAGC 247
                      ** ************************** **** *************************

consensus_8703#0      AGTGCGTGTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTTTTCGCCA 655
consensus_8703#2      AGTGCGTGTGTGTGCGCATAATAAGGGTTANATATATATATGCTCAAATGTTTTTCGCCA 244
consensus_8703#1      AGTGCGTGTGTGTGCGCATAATAAGGGTTACATATATATATGCTCAAATGTTTTTCGCCA 307
                      ****************************** *****************************

consensus_8703#0      GAATAGCTATATACATATATACATTTGATGAAATTATTAATTTTCAAACG---------- 705
consensus_8703#2      GAATAGCNTNATACATATATACATTTGATGAAAAAAAAAAAAAAAAAANANAG------- 297
consensus_8703#1      GAATAGCTATATACATATATACATTTGATGAAATTATTAATTTTCAAACNGACTGANATN 367
                      *******   ***********************  *  **     ***            

consensus_8703#0      ----------------------------
consensus_8703#2      ----------------------------
consensus_8703#1      NANAATNATCTCTNANANNANNANNACC 395