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Oryza sativa
cluster # 8708 cluster # 8708       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8708#0 length = 2047 sequences # 5  

consensusID : consensus_8708#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2047
fasta sequence
                              [TGAAAATGAAGGTATTTGGTATTGCGGACTTGGTTATAAGTGAATTGGATATTGAGATGCCTAGTTACCTGGGACTGCTTACACTACTACAAAACGATTGGCACACAAGAAAAAGATCCATGGAAACATGGAGAATGGAGATGTTCAGTTCATCTATTGTCCAAAGATCTCTGGTTTATCTTGTAGTGCATGGCTAAAAATAACATTTGAGATTCGGGGGAAATAATGGTGGAAGGAGTGCTTGGTAAGTTGGAAAATAGCTCAGGACACCACTTGTTTCTGGAATGTCCGTCTGTTTCTTCGGATTGTAGAAATTGAAGGGTGGAACTCCTTGCAGAGGATTAGATCATGCTCCAGGAGGCCTAACCTATATGATATGAATTGGATAAAGAGATGAACCAGGCTTTAGGAACATGTGAATTCTGCAAGACTGGCGAGCCCAAATGTGGGTTGCTGCATTGTTGATATTTTAACTACTTTATAAACCAGACAAGAGATCAGGATCATATGGTGCTGAGTTCACCTTCAATTACTGTGCTGTTTACTTGACAGAAATTATTTTCAGAGGCTTATTTCTGCAATGCATTTTTTTTCTGGTTTGACTCTTGAGGGCCTTTGCTGAAAGCAGTTCACCTTCAGGAGTTGCAGAACTCATGCATGATGCAAGTCCTACTTGCTGACTGTTACTCCTTGTGGCTTCTAATGTTCATGTAGAATGTTTGTCGCTCGCCTTTCAGGATATCACCCGCACTCAGGTTCCATGATACCTCCACGTGGCCGCGGAGTAGAAAGCAGCAATTTCAATGACGGTTCACGTTATGGATATGAGCTGGCAAGTAAAGGAGGTGAAAGGTTACAATATGTTTCTCCTCCCAATGGAAGAGGAAGACCACACAGGAGGGATGGTGGTGCTCCTGGAAAAGATTTCATCTTCATTAATGGAGAATATGTGCACAGGAATGACCCAAACTTGTCTCCAAGAGAAGGTGACTGGATATGTCAGAATCCCACTTGCGGAAATCTTAATTTTGCTCGGCGGTCTCACTGTAACAACTGCAACAAGGAACGCTATGCACCTGCCATGTACAAGTCCAGCTACAGTCCTGACAGACGCCAGTTCAACTCTCCACCACAAGGGCCACCGAGTAGGGTTATTGGTCCACCGAGTGGCCGTGATCTGCCAAGGGAGAAACAAAGGTATAGATCACCACCGCGTGGTTGGGGTATGGTCCGACCGGATGATCATAGGGACTATTCTACGCAGTTGTCCCAAGATCGTCCAGGACGAATGGCAGACCCTATGCACAGGGACAGGATCAACTTCGGGGATGAACTTCCACACCGACAGCGTGGGAAGTTTGACTGGGATGGCTATAATCACCGGGAGCATCCACGCGATGGACCATATCTTGACCGAAGAGAACCACGGTTGGGGTCTCCCAGGGGTAACTGGGGACAAGCTGTACGGGACAGAAGTCATTCACCCATGCGTAACAAGCCCATGAACAGGGGACTAGACTTACGGGAGAGAAGCCGTTCACCCTTTCGGGACAGGCCCTTGAACAAAGCCTCCATTGGAAGAGGTGGACCTGACCGAGACTATGTTCATCCATTTGACACCCATGGGCGACCTCATAATTTGGGCAATAGCCGTGGCCATGGTTACAGGCAGGAGGAT-GATCTGTTTCCTATTCGCAATCAAGGTGACCAGCGTGTCCTTTCCCGTCATCGGAATGGAATCCACTGAAATGTAATATCTTTCAGCTGGGTACAGATTCTTCGTGTTGATAGGCTATCTGGAAAAGCGAATCTAATAAAAATTATCTCGATGCTTGAGGACTCCTGAAGCTTTGTAATAATGTTTAATGTTTTGTACTGTGTAGTTACTTCCTTGGTTGGGTTGTTTCAGTGGAAGTTTCACCATTAGAAATGTCTTCATGAACTGAATTTAAAGGGCAATGCTAGGAATGAATATTGGAGTGGTTAAAGATGAACACAACCATACTGTGCTCTGTATGTTTTATTGTGTGAAATCTTGAGGTGTAAA]

[+] EMBL AK105691             [TGAAAATGAAGGTATTTGGTATTGCGGACTTGGTTATAAGTGAATTGGATATTGAGATGCCTAGTTACCTGGGACTGCTTACACTACTACAAAACGATTGGCACACAAGAAAAAGATCCATGGAAACATGGAGAATGGAGATGTTCAGTTCATCTATTGTCCAAAGATCTCTGGTTTATCTTGTAGTGCATGGCTAAAAATAACATTTGAGATTCGGGGGAAATAATGGTGGAAGGAGTGCTTGGTAAGTTGGAAAATAGCTCAGGACACCACTTGTTTCTGGAATGTCCGTCTGTTTCTTCGGATTGTAGAAATTGAAGGGTGGAACTCCTTGCAGAGGATTAGATCATGCTCCAGGAGGCCTAACCTATATGATATGAATTGGATAAAGAGATGAACCAGGCTTTAGGAACATGTGAATTCTGCAAGACTGGCGAGCCCAAATGTGGGTTGCTGCATTGTTGATATTTTAACTACTTTATAAACCAGACAAGAGATCAGGATCATATGGTGCTGAGTTCACCTTCAATTACTGTGCTGTTTACTTGACAGAAATTATTTTCAGAGGCTTATTTCTGCAATGCATTTTTTTTCTGGTTTGACTCTTGAGGGCCTTTGCTGAAAGCAGTTCACCTTCAGGAGTTGCAGAACTCATGCATGATGCAAGTCCTACTTGCTGACTGTTACTCCTTGTGGCTTCTAATGTTCATGTAGAATGTTTGTCGCTCGCCTTTCAGGATATCACCCGCACTCAGGTTCCATGATACCTCCACGTGGCCGCGGAGTAGAAAGCAGCAATTTCAATGACGGTTCACGTTATGGATATGAGCTGGCAAGTAAAGGAGGTGAAAGGTTACAATATGTTTCTCCTCCCAATGGAAGAGGAAGACCACACAGGAGGGATGGTGGTGCTCCTGGAAAAGATTTCATCTTCATTAATGGAGAATATGTGCACAGGAATGACCCAAACTTGTCTCCAAGAGAAGGTGACTGGATATGTCAGAATCCCACTTGCGGAAATCTTAATTTTGCTCGGCGGTCTCACTGTAACAACTGCAACAAGGAACGCTATGCACCTGCCATGTACAAGTCCAGCTACAGTCCTGACAGACGCCAGTTCAACTCTCCACCACAAGGGCCACCGAGTAGGGTTATTGGTCCACCGAGTGGCCGTGATCTGCCAAGGGAGAAACAAAGGTATAGATCACCACCGCGTGGTTGGGGTATGGTCCGACCGGATGATCATAGGGACTATTCTACGCAGTTGTCCCAAGATCGTCCAGGACGAATGGCAGACCCTATGCACAGGGACAGGATCAACTTCGGGGATGAACTTCCACACCGACAGCGTGGGAAGTTTGACTGGGATGGCTATAATCACCGGGAGCATCCACGCGATGGACCATATCTTGACCGAAGAGAACCACGGTTGGGGTCTCCCAGGGGTAACTGGGGACAAGCTGTACGGGACAGAAGTCATTCACCCATGCGTAACAAGCCCATGAACAGGGGACTAGACTTACGGGAGAGAAGCCGTTCACCCTTTCGGGACAGGCCCTTGAACAAAGCCTCCATTGGAAGAGGTGGACCTGACCGAGACTATGTTCATCCATTTGACACCCATGGGCGACCTCATAATTTGGGCAATAGCCGTGGCCATGGTTACAGGCAGGAGGAT GATCTGTTTCCTATTCGCAATCAAGGTGACCAGCGTGTCCTTTCCCGTCATCGGAATGGAATCCACTGAAATGTAATATCTTTCAGCTGGGTACAGATTCTTCGTGTTGATAGGCTATCTGGAAAAGCGAATCTAATAAAAATTATCTCGATGCTTGAGGACTCCTGAAGCTTTGTAATAATGTTTAATGTTTTGTACTGTGTAGTTACTTCCTTGGTTGGGTTGTTTCAGTGGAAGTTTCACCATTAGAAATGTCTTCATGAACTGAATTTAAAGGGCAATGCTAGGAATGAATATTGGAGTG                                                                 ]
[-] EMBL CB654431             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAGATCGTCCAGGACGAATGGCAGACCCTATGCACAGGGACAGGATCAACTTCGGGGATGAACTTCCACACCGACAGCGTGGGAAGTTTGACTGGGATGGCTATAATCACCGGGAGCATCCACGCGATGGACCATATCTTGACCGAAGAGAACCACGGTTGGGGTCTCCCAGGGGTAACTGGGGACAAGCTGTACGGGACAGAAGTCATTCACCCATGCGTAACAAGCCCATGAACAGGGGACTAGACTTACGGGAGAGAAGCCGTTCACCCTTTCGGGACAGGCCCTTGAACAAAGCCTCCATTGGAAGAGGTGGACCTGACCGAGACTATGTTCATCCATTTGACACCCATGGGCGACCTCATAATTTGGGCAATAGCCGTGGCCATGGTTACAGGCAGGAGGAT GATCTGTTTCCTATTCGCAATCAAGGTGACCAGCGTGTCCTTTCCCGTCATCGGAATGGAATCCACTGAAATGTAATATCTTTCAGCTGGGTACAGATTTTTTGTGTTGATAGGCTATCTGGAAAAGCGAATGTAATAAAAATTATCTCGATGCTTGAGGACTCCTGAAGCTTTGTAATAATGTTTAATGTTTTGTACTGTGTAGTTCCTTCCTTGGTTGGGTTGTTTCAGTGGAAGTTTCTCCATTAGAAATGTCTTCATGAACTGAATTTAAAGGGCAATGCTAGGAATGAATATTGGAGTGGTTAAAGATGAACACAACCATTCTGTGCTCTGTATGTTTTATTGTG GAAAaaaggga       ]
[-] EMBL CB640003             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GGGGACAAGCTGTACGGGACAGAAGTCATTCACCCATGCGTAACAAGCCCATGAACAGGGGACTAGACTTACGGGAGAGAAGCCGTTCACCCTTTCGGGACAGGCCCTTGAACAAAGCCTCCATTGGAAGAGGTGGACCTGACCGAGACTATGTTCATCCATTTGACACCCATGGGCGACCTCATAATTTGGGCAATAGCCGTGGCCATGGTTACAGGCAGGAGGAT GATCTGTTTCCTATTCGCAATCAAGGTGACCAGCGTGTCCTTTCCCGTCATCGGAATGGAATCCACTGAAATGTAATATCTTTCAGCTGGGTACAGATTCTTCGTGTTGATAGGCTATCTGGAAAAGCGAATCTAATAAAAATTATCTCGATGCTTGAGGACTCCTGAAGCTTTGTAATAATGTTTAATGTTTTGTACTGTGTAGTTACTTCCTTGGTTGGGTTGTTTCAGTGGAAGTTTCACCATTAGAAATGTCTTCATGAACTGAATTTAAAGGGCAATGCTAGGAATGAATATTGGAGTGGTTAAAGATGAACACAACCATACTGTGCTCTGTATGTTTTATTGTGTGAAATCTTGAGGTGTAAA]
[-] EMBL CB636354             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGTCATTCACCCATGCGTAACAAGCCCATGAACAGGGGACTAGACTTACGGGAGAGAAGCCGTTCACCCTTTCGGGACAGGCCCTTGAACAAAGCCTCCATTGGAAGAGGTGGACCTGACCGAGACTATGTTCATCCATTTGACACCCATGGGCGACCTCATAATTTGGGCAATAGCCGTGGCCATGGTTACAGGCAGGAGGAT GATCTGTTTCCTATTCGCAATCAAGGTGACCAGCGTGTCCTTTCCCGTCATCGGAATGGAATCCACTGAAATGTAATATCTTTCAGCTGGGTACAGATTCTTCGTGTTGATAGGCTATCTGGAAAAGCGAATCTAATAAAAATTATCTCGATGCTTGAGGACTCCTGAAGCTTTGTAATAATGTTTAATGTTTTGTACTGTGTAGTTACTTCCTTGGTTGGGTTGTTTCAGTGGAAGTTTCACCATTAGAAATGTCTTCATGAACTGAATTTAAAGGGCAATGCTAGGAATGAATATTGGAGTGGTTAAAGATGAACACAACCATACTGTGCTCTGTATGTTTTATTGTGTGAAATCTTGAGGTGTAA ]
[-] EMBL AW069923             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCCGAGGTTACAGGCA GAGGATNGATCTGTTTCCTATTCGCAATCAAGGTGACCAGCGTGTCCTCTCCCGTCATCGGAATGGAATCCACTGAAATGTAATATCTTTC                                                                                                                                                                                                                                                                                             ]


>consensus_8708#0 TGAAAATGAAGGTATTTGGTATTGCGGACTTGGTTATAAGTGAATTGGATATTGAGATGC CTAGTTACCTGGGACTGCTTACACTACTACAAAACGATTGGCACACAAGAAAAAGATCCA TGGAAACATGGAGAATGGAGATGTTCAGTTCATCTATTGTCCAAAGATCTCTGGTTTATC TTGTAGTGCATGGCTAAAAATAACATTTGAGATTCGGGGGAAATAATGGTGGAAGGAGTG CTTGGTAAGTTGGAAAATAGCTCAGGACACCACTTGTTTCTGGAATGTCCGTCTGTTTCT TCGGATTGTAGAAATTGAAGGGTGGAACTCCTTGCAGAGGATTAGATCATGCTCCAGGAG GCCTAACCTATATGATATGAATTGGATAAAGAGATGAACCAGGCTTTAGGAACATGTGAA TTCTGCAAGACTGGCGAGCCCAAATGTGGGTTGCTGCATTGTTGATATTTTAACTACTTT ATAAACCAGACAAGAGATCAGGATCATATGGTGCTGAGTTCACCTTCAATTACTGTGCTG TTTACTTGACAGAAATTATTTTCAGAGGCTTATTTCTGCAATGCATTTTTTTTCTGGTTT GACTCTTGAGGGCCTTTGCTGAAAGCAGTTCACCTTCAGGAGTTGCAGAACTCATGCATG ATGCAAGTCCTACTTGCTGACTGTTACTCCTTGTGGCTTCTAATGTTCATGTAGAATGTT TGTCGCTCGCCTTTCAGGATATCACCCGCACTCAGGTTCCATGATACCTCCACGTGGCCG CGGAGTAGAAAGCAGCAATTTCAATGACGGTTCACGTTATGGATATGAGCTGGCAAGTAA AGGAGGTGAAAGGTTACAATATGTTTCTCCTCCCAATGGAAGAGGAAGACCACACAGGAG GGATGGTGGTGCTCCTGGAAAAGATTTCATCTTCATTAATGGAGAATATGTGCACAGGAA TGACCCAAACTTGTCTCCAAGAGAAGGTGACTGGATATGTCAGAATCCCACTTGCGGAAA TCTTAATTTTGCTCGGCGGTCTCACTGTAACAACTGCAACAAGGAACGCTATGCACCTGC CATGTACAAGTCCAGCTACAGTCCTGACAGACGCCAGTTCAACTCTCCACCACAAGGGCC ACCGAGTAGGGTTATTGGTCCACCGAGTGGCCGTGATCTGCCAAGGGAGAAACAAAGGTA TAGATCACCACCGCGTGGTTGGGGTATGGTCCGACCGGATGATCATAGGGACTATTCTAC GCAGTTGTCCCAAGATCGTCCAGGACGAATGGCAGACCCTATGCACAGGGACAGGATCAA CTTCGGGGATGAACTTCCACACCGACAGCGTGGGAAGTTTGACTGGGATGGCTATAATCA CCGGGAGCATCCACGCGATGGACCATATCTTGACCGAAGAGAACCACGGTTGGGGTCTCC CAGGGGTAACTGGGGACAAGCTGTACGGGACAGAAGTCATTCACCCATGCGTAACAAGCC CATGAACAGGGGACTAGACTTACGGGAGAGAAGCCGTTCACCCTTTCGGGACAGGCCCTT GAACAAAGCCTCCATTGGAAGAGGTGGACCTGACCGAGACTATGTTCATCCATTTGACAC CCATGGGCGACCTCATAATTTGGGCAATAGCCGTGGCCATGGTTACAGGCAGGAGGATGA TCTGTTTCCTATTCGCAATCAAGGTGACCAGCGTGTCCTTTCCCGTCATCGGAATGGAAT CCACTGAAATGTAATATCTTTCAGCTGGGTACAGATTCTTCGTGTTGATAGGCTATCTGG AAAAGCGAATCTAATAAAAATTATCTCGATGCTTGAGGACTCCTGAAGCTTTGTAATAAT GTTTAATGTTTTGTACTGTGTAGTTACTTCCTTGGTTGGGTTGTTTCAGTGGAAGTTTCA CCATTAGAAATGTCTTCATGAACTGAATTTAAAGGGCAATGCTAGGAATGAATATTGGAG TGGTTAAAGATGAACACAACCATACTGTGCTCTGTATGTTTTATTGTGTGAAATCTTGAG GTGTAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)