cluster # 8709

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8709 cluster # 8709 Sequences # 5 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8709#0 length = 1342 sequences # 5
consensusID : consensus_8709#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1342
fasta sequence
                              [CAAGCTGTTCGGCCGCCGGCGCGAAGAACATGGAGTCCGTGGTGGTGGCCGGAGATCTGGCCGCTGCACCGGCGCCGGCGACGCCGAT-GTGGTTCGTGGCGCTGGTCGCCGTCGGCCTGCACGCGGCGGTCGTGTGGGCGGGGACGTTCCTCGCGTGGCTCCGCCGCGCGT-TCCTCCGGCCCGGGAAGGGCCTGTGCCGGCGGTACGGCGAGTGGGCGGTGGTCACCGGCGCCACCGACGGCATCGGACGCGCGGTGGCGCTGGAGCTGGCTCGCCGCGGGCTCCACCTCGTGCTCGTGGGGCGGAACCCCGGGAAGCTGTCGGGCGTCT-GCAAGGAGGTCCGCGCAGCGGCGCCGGCGTGCAAGGTGAGGACCGTGGTGTTCGACCTCGCCGCCCCAGGGGACGACGACGTCGGGGGCGGCGAGCTGTCCCGCGGCGTGGCGAGGGTGGCGGCGGCCGTGGAGGGGCTCGACGTGGGGCTGCTCGTGAACAACGCCGGCGCGACGTACCCGTGCGCGGCGTACTTCCACGAGGTGCCCGACGCGGTCTGGGGGGCGGTGCTGCGGGTGAACGTGGTGGCGGCGACGAGGATCGCGCGCGCCCTCGTGCCGGCCATGGCGGCGAAGGGGAGGGGTGCCGTCGTCAACGTCGGCTCCGGCTCCTCCGTCGTCGTGCCGGCGTTCCCGCTCTACGCCGTGTACGCAGCGACCAAAGCGTATGTTGACCAATTGTCTCGAAGTCTACATGTTGAATACAAGCATCACGGAGTGGATGTGCAATGCCAGATACCATTATATGTCGCCACAAAGATGTCACCTGTCCAGGGTAACTCGCCGTTTATACCATCACCCGAGGAGTACGCCAAGGCTGCTGTCCGCTGCATCGGTTATGAGCCAAGATGTGTCCCCTACTGGCGCCACTCGATCCAGTGGTTCTTTGCATCTCTACTGCCAGATTCTGTTCTGAATCTATGGCGTCTCCAGGTTGGAATCCGGAAGAGAAATCAGATGAAGGTTCTGCTTGGTGAGAGC-GAT-CA-TGGATTCAGTT--A-AAC-TG-CCAT-AAATG-TTGGTTTTG-TG-AAGTG-TG-TGTTAATCTATT-CGAACAAA-ATAGTATATACATCAATCTGGGATTTGGGTAGTAGTATATACTTCGATGAGTTATGTGCTGAATATAATGGAATGGCATTTAGTGTTTGTTTTGAACTTTGGGTAGTGGTTTTGTTTGCACCTCTAGCACTATTTTTTATTGGTTTGTGCGAGTTGGAATTATTAGTACTTTTCCATTCAGTGTAATCGAGAAATAAACAATGTAAAATATGATGATGAATCTTAGTATTCCCTCCAAAAAA]

[+] EMBL AK059916             [CAAGCTGTTCGGCCGCCGGCGCGAAGAACATGGAGTCCGTGGTGGTGGCCGGAGATCTGGCCGCTGCACCGGCGCCGGCGACGCCGAT GTGGTTCGTGGCGCTGGTCGCCGTCGGCCTGCACGCGGCGGTCGTGTGGGCGGGGACGTTCCTCGCGTGGCTCCGCCGCGCGT TCCTCCGGCCCGGGAAGGGCCTGTGCCGGCGGTACGGCGAGTGGGCGGTGGTCACCGGCGCCACCGACGGCATCGGACGCGCGGTGGCGCTGGAGCTGGCTCGCCGCGGGCTCCACCTCGTGCTCGTGGGGCGGAACCCCGGGAAGCTGTCGGGCGTCT GCAAGGAGGTCCGCGCAGCGGCGCCGGCGTGCAAGGTGAGGACCGTGGTGTTCGACCTCGCCGCCCCAGGGGACGACGACGTCGGGGGCGGCGAGCTGTCCCGCGGCGTGGCGAGGGTGGCGGCGGCCGTGGAGGGGCTCGACGTGGGGCTGCTCGTGAACAACGCCGGCGCGACGTACCCGTGCGCGGCGTACTTCCACGAGGTGCCCGACGCGGTCTGGGGGGCGGTGCTGCGGGTGAACGTGGTGGCGGCGACGAGGATCGCGCGCGCCCTCGTGCCGGCCATGGCGGCGAAGGGGAGGGGTGCCGTCGTCAACGTCGGCTCCGGCTCCTCCGTCGTCGTGCCGGCGTTCCCGCTCTACGCCGTGTACGCAGCGACCAAAGCGTATGTTGACCAATTGTCTCGAAGTCTACATGTTGAATACAAGCATCACGGAGTGGATGTGCAATGCCAGATACCATTATATGTCGCCACAAAGATGTCACCTGTCCAGGGTAACTCGCCGTTTATACCATCACCCGAGGAGTACGCCAAGGCTGCTGTCCGCTGCATCGGTTATGAGCCAAGATGTGTCCCCTACTGGCGCCACTCGATCCAGTGGTTCTTTGCATCTCTACTGCCAGATTCTGTTCTGAATCTATGGCGTCTCCAGGTTGGAATCCGGAAGAGAAATCAGATGAAGGTTCTGCTTGGTGAGAGC GAT CA TGGATTCAGTT  A AAC TG CCAT AAATG TTGGTTTTG TG AAGTG TG TGTTAATCTATT CGAACAAA ATAGTATATACATCAATCTGGGATTTGGGTAGTAGTATATACTTCGATGAGTTATGTGCTGAATATAATGGAATGGCATTTAGTGTTTGTTTTGAACTTTGGGTAGTGGTTTTGTTTGCACCTCTAGCACTATTTTTTATTGGTTTGTGCGAGTTGGAATTATTAGTACTTTTCCATTCAGTGTAATCGAGAAATAAACAATGTAAAATATGAT                            ]
[+] EMBL OSS3960A             [        TCGGCCGCCGGCGCGAAGAACATGGAGTCCGTGGTGGTGGCCGGAGATCTGGCCGCTGCACCGGCGCCTGCGACGCCANTNGTGGTTCGTGGCGCTGGTCGCCGTCGGCCTGCACGCGGCGGTCGTNTGGGCGGGGACGTTCCTCGCGTGGCTCCGCCGCG GTNTCCTCCGGCCCGGGAAGGG CTGTCCCGGCGGTACGGCGAGTGGGCGGTGGTCANCGGNGCCACCGACGGCATCGGACGCGCGNTGGCNCTGGAGCTGGCTCNCCGCGGGCTCCACCTCGTGCTCGTNGGGCGGAACCCCGGNAAGCTGTCGGGCGTCTNGAAAAAAGGTCCGCGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSS3390A             [        TCGGCCGCCGGCGCGAAGAACATGGAGTCCGTGGTGGTGGCCGGAGATCTGGCCGCTGCACCGGCGCCGGCGACGCCGAT GTGGTTCGTGGCGCTGGTCGNCGTCGGCCTGCACGCGGCGGTCGTGTGGGCGGGGACGTTCCTCGCGTGGCTCCGNCGCGCGT TCCTCCGGCCCGGGAAGGGCCTGTGCCGGCGGTACGGCGAGTGGGCGGTGGTCACCGGCGTCACCGACGGCATCGGACGCGCGGTGGCGCTGGAGCTGGCTCGNCGCGGGCTCCACCTCGTGCTCGTGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU174309             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCCTACTGGCGCCACTCGATCCAGTGGTTCTTTGCATCTCTACTGCCAGATTCTGTTCTGAATCTATGGCGTCTCCAGGTTGGAATCCGGAAGAGAAATCAGATGAAGGTTCTGCTTGGTGAGAGC GAT CA TGGATTCAGTT  A AAC TG CCAT AAATG TTGGTTTTG TG AAGTG TG TGTTAATCTATT CGAACAAA ATAGTATATACATCAATCTGGGATTTGGGTAGTAGTATATACTTCGATGAGTTATGTGCTGAATATAATGGAATGGCATTTAGTGTTTGTTTTGAACTTTGGGTAGTGGTTTTGTTTGCACCTCTAGCACTATTTTTTATTGGTTTGTGCGAGTTGGAATTATTAGTACTTTTCCATTCAGTGTAATCGAGAAATAAACAATGTAAAATATGATGATGAATCTTAGTATTCCCTCCAAAAAA]
[+] EMBL AU097285             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    cgGAGCTGATCCATTGGATTCAGTTTCAGAACTTGCCCATAAAATGNTGGGTTTNGTTGAAAGTGCTGTTGTTAATCTATTCCGAACAAANATAGTATATACATCAATCTGGGATTTGGGTAGTAGTATATACTTCGATGAGTTATGTGCTGAATATAATGGAATGGCATTTAGTGTTTGTTTTGAACTTTGGGTAGTGGTTTTGTTTGCACCTCTAGCACTATTTTTTATTGGTTTGTGCGAGTTGGAATTATTAGTACTTTTCCATTCAGTGTAATCGAGAAATAAACAATGTAAAATATGATGATGAATCTTAGTATTCCCTCCAAAA  ]




>consensus_8709#0
CAAGCTGTTCGGCCGCCGGCGCGAAGAACATGGAGTCCGTGGTGGTGGCCGGAGATCTGG
CCGCTGCACCGGCGCCGGCGACGCCGATGTGGTTCGTGGCGCTGGTCGCCGTCGGCCTGC
ACGCGGCGGTCGTGTGGGCGGGGACGTTCCTCGCGTGGCTCCGCCGCGCGTTCCTCCGGC
CCGGGAAGGGCCTGTGCCGGCGGTACGGCGAGTGGGCGGTGGTCACCGGCGCCACCGACG
GCATCGGACGCGCGGTGGCGCTGGAGCTGGCTCGCCGCGGGCTCCACCTCGTGCTCGTGG
GGCGGAACCCCGGGAAGCTGTCGGGCGTCTGCAAGGAGGTCCGCGCAGCGGCGCCGGCGT
GCAAGGTGAGGACCGTGGTGTTCGACCTCGCCGCCCCAGGGGACGACGACGTCGGGGGCG
GCGAGCTGTCCCGCGGCGTGGCGAGGGTGGCGGCGGCCGTGGAGGGGCTCGACGTGGGGC
TGCTCGTGAACAACGCCGGCGCGACGTACCCGTGCGCGGCGTACTTCCACGAGGTGCCCG
ACGCGGTCTGGGGGGCGGTGCTGCGGGTGAACGTGGTGGCGGCGACGAGGATCGCGCGCG
CCCTCGTGCCGGCCATGGCGGCGAAGGGGAGGGGTGCCGTCGTCAACGTCGGCTCCGGCT
CCTCCGTCGTCGTGCCGGCGTTCCCGCTCTACGCCGTGTACGCAGCGACCAAAGCGTATG
TTGACCAATTGTCTCGAAGTCTACATGTTGAATACAAGCATCACGGAGTGGATGTGCAAT
GCCAGATACCATTATATGTCGCCACAAAGATGTCACCTGTCCAGGGTAACTCGCCGTTTA
TACCATCACCCGAGGAGTACGCCAAGGCTGCTGTCCGCTGCATCGGTTATGAGCCAAGAT
GTGTCCCCTACTGGCGCCACTCGATCCAGTGGTTCTTTGCATCTCTACTGCCAGATTCTG
TTCTGAATCTATGGCGTCTCCAGGTTGGAATCCGGAAGAGAAATCAGATGAAGGTTCTGC
TTGGTGAGAGCGATCATGGATTCAGTTAAACTGCCATAAATGTTGGTTTTGTGAAGTGTG
TGTTAATCTATTCGAACAAAATAGTATATACATCAATCTGGGATTTGGGTAGTAGTATAT
ACTTCGATGAGTTATGTGCTGAATATAATGGAATGGCATTTAGTGTTTGTTTTGAACTTT
GGGTAGTGGTTTTGTTTGCACCTCTAGCACTATTTTTTATTGGTTTGTGCGAGTTGGAAT
TATTAGTACTTTTCCATTCAGTGTAATCGAGAAATAAACAATGTAAAATATGATGATGAA
TCTTAGTATTCCCTCCAAAAAA
clustalw multiple alignements is not computed in this case