cluster # 871

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Oryza sativa
cluster # 871 cluster # 871 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_871#0 length = 356 sequences # 1

consensus_871#1 length = 353 sequences # 1

consensusID : consensus_871#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence

                              [GGCGGCGGAGGACCCGACGGCCCTCGGGAGAGGCGGCAGTGGTGGTTCGGCGATCTTGCAAGTCATCGATTCCCAGTTTTTGATTCGGGTGTGGTCTTGTTGAAGCCCCATGATGTGTTGCCGCTGGAGATTAATTGATGTTAGAAGAAGACCTGTGAACTTTTGTCTTGTTTTTCTTGAAGATACTAGAGATTTTTTCGTTGTGATGTAGCTAGAAAATTAGAATCTTAACAATTTCCCTGAAATGCAGTTTCCCAGTAGTTTTTAGTTTTGTAGTTTGTTTTTCGGTTCCTATTGTAAAACTTGTAAGTTCTCCGGCTTCTTGCCATCTTTTGAAAGGAATTAGTTTGAAAAAA]

[+] EMBL BI805151             [GGCGGCGGAGGACCCGACGGCCCTCGGGAGAGGCGGCAGTGGTGGTTCGGCGATCTTGCAAGTCATCGATTCCCAGTTTTTGATTCGGGTGTGGTCTTGTTGAAGCCCCATGATGTGTTGCCGCTGGAGATTAATTGATGTTAGAAGAAGACCTGTGAACTTTTGTCTTGTTTTTCTTGAAGATACTAGAGATTTTTTCGTTGTGATGTAGCTAGAAAATTAGAATCTTAACAATTTCCCTGAAATGCAGTTTCCCAGTAGTTTTTAGTTTTGTAGTTTGTTTTTCGGTTCCTATTGTAAAACTTGTAAGTTCTCCGGCTTCTTGCCATCTTTTGAAAGGAATTAGTTTGAAAAAA]




>consensus_871#0
GGCGGCGGAGGACCCGACGGCCCTCGGGAGAGGCGGCAGTGGTGGTTCGGCGATCTTGCA
AGTCATCGATTCCCAGTTTTTGATTCGGGTGTGGTCTTGTTGAAGCCCCATGATGTGTTG
CCGCTGGAGATTAATTGATGTTAGAAGAAGACCTGTGAACTTTTGTCTTGTTTTTCTTGA
AGATACTAGAGATTTTTTCGTTGTGATGTAGCTAGAAAATTAGAATCTTAACAATTTCCC
TGAAATGCAGTTTCCCAGTAGTTTTTAGTTTTGTAGTTTGTTTTTCGGTTCCTATTGTAA
AACTTGTAAGTTCTCCGGCTTCTTGCCATCTTTTGAAAGGAATTAGTTTGAAAAAA

consensusID : consensus_871#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [TGGTGGCTTTACGATTTGGTTTCAGTATCTTGCAAGTCATGCGATTCCAAGTTTTTGATTCGGGTGTGGTTCTTGTTGAAGCCCCATGATGTGTCCCCCCTGGAGATTAATTGGATGTTGAGAAGAAGACCTGTGGAACTTGTTGTCTTGTTTTTCTTGAAGATACTAGAGATTTTTTCGTTGTGATGTAGCTAGAAAATTAGAATCNTAACAATTGTCCCTGAAATCAGTTTCACAGTAGTTTTTAGTTTTGTAGTTTGTTTTTCAGGTTCCTATTGTAAAACTTGTAAGTTCTCCAGGCTTCTTCCATCTTTGGAAAGGAATTAGTTNGAAATGTTTGGGGTTAAAAAAAA]

[+] EMBL BI806174             [TGGTGGCTTTACGATTTGGTTTCAGTATCTTGCAAGTCATGCGATTCCAAGTTTTTGATTCGGGTGTGGTTCTTGTTGAAGCCCCATGATGTGTCCCCCCTGGAGATTAATTGGATGTTGAGAAGAAGACCTGTGGAACTTGTTGTCTTGTTTTTCTTGAAGATACTAGAGATTTTTTCGTTGTGATGTAGCTAGAAAATTAGAATCNTAACAATTGTCCCTGAAATCAGTTTCACAGTAGTTTTTAGTTTTGTAGTTTGTTTTTCAGGTTCCTATTGTAAAACTTGTAAGTTCTCCAGGCTTCTTCCATCTTTGGAAAGGAATTAGTTNGAAATGTTTGGGGTTAAAAAAAA]




>consensus_871#1
TGGTGGCTTTACGATTTGGTTTCAGTATCTTGCAAGTCATGCGATTCCAAGTTTTTGATT
CGGGTGTGGTTCTTGTTGAAGCCCCATGATGTGTCCCCCCTGGAGATTAATTGGATGTTG
AGAAGAAGACCTGTGGAACTTGTTGTCTTGTTTTTCTTGAAGATACTAGAGATTTTTTCG
TTGTGATGTAGCTAGAAAATTAGAATCNTAACAATTGTCCCTGAAATCAGTTTCACAGTA
GTTTTTAGTTTTGTAGTTTGTTTTTCAGGTTCCTATTGTAAAACTTGTAAGTTCTCCAGG
CTTCTTCCATCTTTGGAAAGGAATTAGTTNGAAATGTTTGGGGTTAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_871#0      GGCGGCGGAGGACCCGACGGCCCTCGGGAGAGGCGGCAGTGGTGGTTCGGCGATCTTGCA 60
consensus_871#1      -------------------------TGGTGGCTTTACGATT-TGGTTTCAGTATCTTGCA 34
                                               ** *      *  *  *****     ********

consensus_871#0      AGTCAT-CGATTCCCAGTTTTTGATTCGGGTGTGGT-CTTGTTGAAGCCCCATGATGTGT 118
consensus_871#1      AGTCATGCGATTCCAAGTTTTTGATTCGGGTGTGGTTCTTGTTGAAGCCCCATGATGTGT 94
                     ****** ******* ********************* ***********************

consensus_871#0      TGCCGCTGGAGATTAATTG-ATGTT-AGAAGAAGACCTGTG-AACTT-TTGTCTTGTTTT 174
consensus_871#1      CCCCCCTGGAGATTAATTGGATGTTGAGAAGAAGACCTGTGGAACTTGTTGTCTTGTTTT 154
                       ** ************** ***** *************** ***** ************

consensus_871#0      TCTTGAAGATACTAGAGATTTTTTCGTTGTGATGTAGCTAGAAAATTAGAATCTTAACAA 234
consensus_871#1      TCTTGAAGATACTAGAGATTTTTTCGTTGTGATGTAGCTAGAAAATTAGAATCNTAACAA 214
                     ***************************************************** ******

consensus_871#0      TT-TCCCTGAAATGCAGTTTCCCAGTAGTTTTTAGTTTTGTAGTTTGTTTTTC-GGTTCC 292
consensus_871#1      TTGTCCCTGAAAT-CAGTTTCACAGTAGTTTTTAGTTTTGTAGTTTGTTTTTCAGGTTCC 273
                     ** ********** ******* ******************************* ******

consensus_871#0      TATTGTAAAACTTGTAAGTTCTCCGGCTTCTTGCCATCTTTTGAAAGGAATTAGTTTGAA 352
consensus_871#1      TATTGTAAAACTTGTAAGTTCTCCAGGCTTCTTCCATCTTTGGAAAGGAATTAGTTNGAA 333
                     ************************ *  *  * ******** ************** ***

consensus_871#0      AAAA---------------- 356
consensus_871#1      ATGTTTGGGGTTAAAAAAAA 353
                     *