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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8710#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1082 fasta sequence
[CGATACGGAGCGGAAGCAACGCTTGTGTTGTCGCGAGTCTCGTGACCTAGCCTAAGCGCCGCCGCCGCTTCGCCTTCCCCACGCGGGTCGCCGGCGCCCCCAGCCTCACCGGTGTTGCTCCCCCTCCACGCGCTCGCCACCACCGCCGCTCCCCGAGTCCCGTGCGCGCCGCTGTCGACACCGGAGCTTGGCCACCTCGGCAAGGCCGGTGACCTCCACCACCTCCAGAGTTTCGTCTCTAGTCCATTCATGGATTCGACCCTAACAAGCGGCTTGACTTCGCCATCTTCAAGGAGACTGACCTCATCGTTCATCGACATCTCTTCAAGGAGGCCCCGCTCCCCTAGCCCCTAGCCGAAGATCCTGAGGTACACAGAGAAGGTGCCCAGGAGGTTCTCTTACCATCAATCACTATGTTTTCGTCGTTTTCACGGTCAATCACTACTCCTTGTTGTGTTACGGAGCTTCCTTAAAGTCTAGGCATTATGCGTGGAAGAGGCAAGAACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTTGGATCCA-AGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAGCGTACTTGGTAAGAGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGAGTCATGAGTGATGCACT-TTAGGACCAAGTTTGGTGCAATTGAGTCAAGATGGTGCAGTGCGAGAAACAACAATATGATGATCATGGCAGAATGAAGCAATGAAGAAAAATTCATGTGATGGCTATAT-GTCATTTAATCTATCAGATGCTCATTACGAGATTTTGAATTCGTAGGTCATTTGACTTCGGGATTAGAGGCCTGCCTTTATTTTTCATGAGCATGTTCATTTTCAGTACTTTGAAATTTTATAAGCTTGCACTATGACAGTTTGTAATATTGTGCAGTTGGTTAAAAGACGATAAGACTGCTAGCTACTATCATAAACATGAATGTCACAAAATCTGGTACTGTTGTATAAATTGCGTTCAACAGCTTGGTTGTCACAAAATGACTTCTAAAACAGAGAAATAGAGGATTTAATTTGTGTT]
[+] EMBL AK107492 [CGATACGGAGCGGAAGCAACGCTTGTGTTGTCGCGAGTCTCGTGACCTAGCCTAAGCGCCGCCGCCGCTTCGCCTTCCCCACGCGGGTCGCCGGCGCCCCCAGCCTCACCGGTGTTGCTCCCCCTCCACGCGCTCGCCACCACCGCCGCTCCCCGAGTCCCGTGCGCGCCGCTGTCGACACCGGAGCTTGGCCACCTCGGCAAGGCCGGTGACCTCCACCACCTCCAGAGTTTCGTCTCTAGTCCATTCATGGATTCGACCCTAACAAGCGGCTTGACTTCGCCATCTTCAAGGAGACTGACCTCATCGTTCATCGACATCTCTTCAAGGAGGCCCCGCTCCCCTAGCCCCTAGCCGAAGATCCTGAGGTACACAGAGAAGGTGCCCAGGAGGTTCTCTTACCATCAATCACTATGTTTTCGTCGTTTTCACGGTCAATCACTACTCCTTGTTGTGTTACGGAGCTTCCTTAAAGTCTAGGCATTATGCGTGGAAGAGGCAAGAACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTTGGATCCA AGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAGCGTACTTGGTAAGAGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGAGTCATGAGTGATGCACT TTAGGACCAAGTTTGGTGCAATTGAGTCAAGATGGTGCAGTGCGAGAAACAACAATATGATGATCATGGCAGAATGAAGCAATGAAGAAAAATTCATGTGATGGCTATAT GTCATTTAATCTATCAGATGCTCATTACGAGATTTTGAATTCGTAGGTCATTTGACTTCGGGATTAGAGGCCTGCCTTTATTTTTCATGAGCATGTTCATTTTCAGTACTTTGAAATTTTATAAGCTTGCACTATGACAGTTTGTAATATTGTGCAGTTGGTTAAAAGACGATAAGACTGCTAGCTACTATCATAAACATGAATGTCACAAAATCTGGTACTGTTGTATAAATTGCGTTCAACAGCTTGGTTGTCACAAAATGACTTCTAAAACAGAGAAATAGAGGATTTAATTTGTGTT]
[+] EMBL AK102896 [ GAGTCTCGTGACCTAGCCTAAGCGCCGCCGCCGCTTCGCCTTCCCCACGCGGGTCGCCGGCGCCCCCAGCCTCACCGGTGTTGCTCCCCCTCCACGCGCTCGCCACCACCGCCGCTCCCCGAGTCCCGTGCGCGCCGCTGTCGACACCGGAGCTTGGCCACCTCGGCAAGGCCGGTGACCTCCACCACCTCCAGAGTTTCGTCTCTAGTCCATTCATGGATTCGACCCTAACAAGCGGCTTGACTTCGCCATCTTCAAGGAGACTGACCTCATCGTTCATCGACATCTCTTCAAGGAGGCCCCGCTCCCCTAGCCCCTAGCCGAAGATCCTGAGGTACACAGAGAAGGTGCCCAGGAGGTTCTCTTACCATCAATCACTATGTTTTCGTCGTTTTCACGGTCAATCACTACTCCTTGTTGTGTTACGGAGCTTCCTTAAAGTCTAGGCATTATGCGTGGAAGAGGCAAGAACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTTGGATCCA AGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAGCGTACTTGGTAAGAGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGAGTCATGAGTGATGCACT TTAGGACCAAGTTTGGTGCAATTGAGTCAAGATGGTGCAGTGCGAGAAACAACAATATGATGATCATGGCAGAATGAAGCAATGAAGAAAAATTCATGTGATGGCTATAT GTCATTTAATCTATCAGATGCTCATTACGAGATTTTGAATTCGTAGGTCATTTGACTTCGGGATTAGAGGCCTGCCTTTATTTTTCATGAGCATGTTCATTTTCAGTACTTTGAAATTTTATAAGCTTGCACTATGACAGTTTGTAATATTGTGCAGTTGGTTAAAAGACGATAAGACTGCTAGCTACTATCATAAACATGAATGTCACAAAATCTG ]
[+] EMBL AU182725 [ CGTGACCTAGCCTAAGCGCCGCCGCCGCTTCGCCTTCCCCACGCGGGTCGCCGGCGCCCCCAGCCTCACCGGTGTTGCTCCCCCTCCACGCGCTCGCCACCACCGCCGNTCCCCGAGTCCCGTGCGCGCCGNTGTCGACACCGGAGCTTGGCCACCTCGGCAAGGCCGGTGACCTCCACCACCTCCAGAGTTTCGTCTCTAGTCCATTCATGGATTCGACCCTAACAAGCGGCTTGACTTCGCCATCTTCAAGGAGACTGACCTCATCGTTCATCGACATCTCTTCAAGGAGGCCCCGCTCCCCTAGCCCCTAGCCGAAGATCCTGAGGTACACAGAGAAGGTGCCCAGGAGGTTCTCTTACCATCAATCACTATGTTTTCGTCGTTTTCACGGTCAATCACTACTCCTTGTTGTGTTA ]
[+] EMBL BI805195 [ TTGGATCCACAGGTCGAAATCCAAAGGGGGTTTCCAAAAT GATACCGTCAAGTTCTAGAGAGCGTACTTGGTAAGAGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGAGTCATGAGTGATGCACTGTTAGGACCAAGTTTGGTGCAATTGAGTCAAGATGGTGCAGTGCGAGAAACAAC ATATGATGATCATGGCAGAATGAAGC ATGAAGAAAAATTCATGTGATGGCTATATGGTCATTTAATCTATCAGATGCTCATTACGAGATTTTGAATTCGTAGGTCATTTGACTTCGGGATTAGAGGCCTGCCTTTATTTTTCATGAGCATGTTCATTTTCAGTACTTTGAAATTTTATAAGCTTGCACTATGACAGTTTGTAATATTGTGCAGTTGGTTAAAAGACGATAAGACTGCTAGCTACTATCATAAACATGAATGTCACAAAATCTGGTACTGTTGTATAAATTGCGTTCAACAGCTTGGTTGTCACAAAAa ]
consensusID : consensus_8710#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence
[AGTTTTCTGTTGAATTTCTGTTAGTTTTCTGTTGNNNTTCTAATATTGCAGTGTTACGGAGCTTCCTTAAAGTCTAGGCATTATGCGTGGAAGAGGCAAGNACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTTGGATCCAAGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAGCGTACTTGGTAAGNGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGNGTCATGAGTCATGCACTTTAGGACCAAGTTTGGTGCAATTGAGTCAAGATG]
[+] EMBL OSR0297A [AGTTTTCTGTTGAATTTCTGTTAGTTTTCTGTTGNNNTTCTAATATTGCAGTGTTACGGAGCTTCCTTAAAGTCTAGGCATTATGCGTGGAAGAGGCAAGNACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTTGGATCCAAGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAGCGTACTTGGTAAGNGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGNGTCATGAGTCATGCACTTTAGGACCAAGTTTGGTGCAATTGAGTCAAGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8710#0 CGATACGGAGCGGAAGCAACGCTTGTGTTGTCGCGAGTCTCGTGACCTAGCCTAAGCGCC 60
consensus_8710#1 ------------------------------------------------------------
consensus_8710#0 GCCGCCGCTTCGCCTTCCCCACGCGGGTCGCCGGCGCCCCCAGCCTCACCGGTGTTGCTC 120
consensus_8710#1 ------------------------------------------------------------
consensus_8710#0 CCCCTCCACGCGCTCGCCACCACCGCCGCTCCCCGAGTCCCGTGCGCGCCGCTGTCGACA 180
consensus_8710#1 ------------------------------------------------------------
consensus_8710#0 CCGGAGCTTGGCCACCTCGGCAAGGCCGGTGACCTCCACCACCTCCAGAGTTTCGTCTCT 240
consensus_8710#1 ------------------------------------------------------------
consensus_8710#0 AGTCCATTCATGGATTCGACCCTAACAAGCGGCTTGACTTCGCCATCTTCAAGGAGACTG 300
consensus_8710#1 ------------------------------------------------------------
consensus_8710#0 ACCTCATCGTTCATCGACATCTCTTCAAGGAGGCCCCGCTCCCCTAGCCCCTAGCCGAAG 360
consensus_8710#1 ------------------------------------------------------------
consensus_8710#0 ATCCTGAGGTACACAGAGAAGGTGCCCAGGAGGTTCTCTTACCATCAATCACTATGTTTT 420
consensus_8710#1 ------------------------------------------AGTTTTCTGTTGAATTTC 18
* * ***
consensus_8710#0 CGTCGTTTTCACGGTCAATCACTACTCCTTGTTGTGTTACGGAGCTTCCTTAAAGTCTAG 480
consensus_8710#1 TGTTAGTTTTCTGTTGNNNTTCTAATA-TTGCAGTGTTACGGAGCTTCCTTAAAGTCTAG 77
** *** * * *** * *** ***************************
consensus_8710#0 GCATTATGCGTGGAAGAGGCAAGAACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTT 540
consensus_8710#1 GCATTATGCGTGGAAGAGGCAAGNACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTT 137
*********************** ************************************
consensus_8710#0 GGATCCAAGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAG 600
consensus_8710#1 GGATCCAAGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAG 197
************************************************************
consensus_8710#0 CGTACTTGGTAAGAGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGAGTCATG 660
consensus_8710#1 CGTACTTGGTAAGNGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGNGTCATG 257
************* *************************************** ******
consensus_8710#0 AGTGATGCACTTTAGGACCAAGTTTGGTGCAATTGAGTCAAGATGGTGCAGTGCGAGAAA 720
consensus_8710#1 AGTCATGCACTTTAGGACCAAGTTTGGTGCAATTGAGTCAAGATG--------------- 302
*** *****************************************
consensus_8710#0 CAACAATATGATGATCATGGCAGAATGAAGCAATGAAGAAAAATTCATGTGATGGCTATA 780
consensus_8710#1 ------------------------------------------------------------
consensus_8710#0 TGTCATTTAATCTATCAGATGCTCATTACGAGATTTTGAATTCGTAGGTCATTTGACTTC 840
consensus_8710#1 ------------------------------------------------------------
consensus_8710#0 GGGATTAGAGGCCTGCCTTTATTTTTCATGAGCATGTTCATTTTCAGTACTTTGAAATTT 900
consensus_8710#1 ------------------------------------------------------------
consensus_8710#0 TATAAGCTTGCACTATGACAGTTTGTAATATTGTGCAGTTGGTTAAAAGACGATAAGACT 960
consensus_8710#1 ------------------------------------------------------------
consensus_8710#0 GCTAGCTACTATCATAAACATGAATGTCACAAAATCTGGTACTGTTGTATAAATTGCGTT 1020
consensus_8710#1 ------------------------------------------------------------
consensus_8710#0 CAACAGCTTGGTTGTCACAAAATGACTTCTAAAACAGAGAAATAGAGGATTTAATTTGTG 1080
consensus_8710#1 ------------------------------------------------------------
consensus_8710#0 TT 1082
consensus_8710#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||