cluster # 8718

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Oryza sativa
cluster # 8718 cluster # 8718 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8718#0 length = 1153 sequences # 3

consensus_8718#1 length = 350 sequences # 1
consensus_8718#2 length = 322 sequences # 1

consensusID : consensus_8718#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1153
fasta sequence

                              [GCGGCGGTACTTCCGACAGGACCACGGCGACAAGAGCGGTTCCTCATCGTCCTCTTCCTCCTCCTCCTCGGGTTCGGACTCGGACAGGGAACCTGCGGAGGAAGCGGCCCCCACTGAGGAAGTAGAGGAACAGCAGGAAGAACAAGAAGATGAGCAGCATGTGGGGGAGGAGGATCCGGGAGAAGAGCAGGAAGAGGAGCTAGAGCCAGTGGTCGAACAAGAGAGTGGGTTCCTATAATTTGTGAGTTTACATTTTCTCGTATTTGCGCAACTGGGATTTCCGAAGTGACCACGTGAGTTTTGCTTTGTTTCCTCATGCCAACCAGGTTCAGGGTACCAAAGTGAGTACAGCTCCGGTAACGATGTTGATGAACCTTCTGCAGATAGTGATGAGCATATCATCCTAAGACATGAAGAAGATCCTGAGATAAATTCGTCTGTTAAGAGAGCCTCAAGTGGTAAAGCTGATTCAACCAAAGATGCATCTGACACGG-ATGATGCTCTTGAGGTTGATTTCAATAACTACATTCTGAAGTGC-AAATCTGTGTACAAGTGCAAGCTTTGTCCTAGAATCATCTGCTTAAATGAGGAGATGGTCAGGGTACATCTTAAATCAAAGAGACATGCTCGATCAAAGAAATTGTTAGGAGAAGGTAGGCTTAAGTTGATGCTTAATAGTGATGGTGAGTTGGAGGAAGAGCAAGAGACACATGCTGAACGACATGCTCGAACTGTAGCTCTTGCTCAGCAAGTACAAAAATCAAAGAAGGATTCTGGCAGGCAGCGCCAAAACCGAAGGAGGAAGAAGAGATCTCAGAAT-CATGTTGAGAAGAAACAGAAGCCACTAACATCTGACAAG-AAAAAACGCAAAATTGAAAAGTAAAGTGGATGGTCAGAAATGTTACAAGTTTTTCCCCCTTTCTCAATTCGCATATGCTAACTTTTAGAGGTAAAATCATGTGATGTTTCTCGAGCCTTTGCTGGCTGTTTTTTGGTGGTCGCATATGCCATCTTTTAGAGGTGAAATCATGTGATGTTTCTCGAGCCATTTCTGGCTGTGTCTGTGTAAGATTTGTTAGCGACAATTTGCTGATACTATGAGATCACGTTGAATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK102942             [GCGGCGGTACTTCCGACAGGACCACGGCGACAAGAGCGGTTCCTCATCGTCCTCTTCCTCCTCCTCCTCGGGTTCGGACTCGGACAGGGAACCTGCGGAGGAAGCGGCCCCCACTGAGGAAGTAGAGGAACAGCAGGAAGAACAAGAAGATGAGCAGCATGTGGGGGAGGAGGATCCGGGAGAAGAGCAGGAAGAGGAGCTAGAGCCAGTGGTCGAACAAGAGAGTGGGTTCCTATAATTTGTGAGTTTACATTTTCTCGTATTTGCGCAACTGGGATTTCCGAAGTGACCACGTGAGTTTTGCTTTGTTTCCTCATGCCAACCAGGTTCAGGGTACCAAAGTGAGTACAGCTCCGGTAACGATGTTGATGAACCTTCTGCAGATAGTGATGAGCATATCATCCTAAGACATGAAGAAGATCCTGAGATAAATTCGTCTGTTAAGAGAGCCTCAAGTGGTAAAGCTGATTCAACCAAAGATGCATCTGACACGG ATGATGCTCTTGAGGTTGATTTCAATAACTACATTCTGAAGTGC AAATCTGTGTACAAGTGCAAGCTTTGTCCTAGAATCATCTGCTTAAATGAGGAGATGGTCAGGGTACATCTTAAATCAAAGAGACATGCTCGATCAAAGAAATTGTTAGGAGAAGGTAGGCTTAAGTTGATGCTTAATAGTGATGGTGAGTTGGAGGAAGAGCAAGAGACACATGCTGAACGACATGCTCGAACTGTAGCTCTTGCTCAGCAAGTACAAAAATCAAAGAAGGATTCTGGCAGGCAGCGCCAAAACCGAAGGAGGAAGAAGAGATCTCAGAAT CATGTTGAGAAGAAACAGAAGCCACTAACATCTGACAAGAAAAAAACGCAAAATTGAAAAGTAAAGTGGATGGTCAGAAATGTTACAAGTTTTTCCCCCTTTCTCAATTCGCATATGCTAACTTTTAGAGGTAAAATCATGTGATGTTTCTCGAGCCTTTGCTGGCTGTTTTTTGGTGGTCGCATATGCCATCTTTTAGAGGTGAAATCATGTGATGTTTCTCGAGCCATTTCTGGCTGTGTCTGTGTAAGATTTGTTAGCGACAATTTGCTGATACTATGAGATCAC                                              ]
[-] EMBL CA759838             [                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCTTCTGTTAA AGAGCCTCAAGTGGT AAGCTGATTCAACCAAAGTGGCATCTG CCCGGAATGATCCTCTTGAGGTTGATTCCAATAGCTACATTGTGAAGTGCAAAATCTGTGTACAAGTGCAAGGTTTGTGCGAGAATAATGTCCTTAAATGAGGAAATGGTCCGGGTGCATCTTAAATCACAGAGACATGGTCGATCAAAGAAATTGTTAGGAGAAGGTAGGCTTAAGTTGATGCTTCATAGTGATGGTGAGTTGGAGGAAGAGCAAGAGACACATGCTGAACGACATGCTCGAACTGTAGCTCTTGCTCAGCAAGTACAAAAATCAAAGGAGGATTCTGGCAGGCAGCGCCAAAACCGAAGGAAGAAGAAGAGATCTCAGAAT CATGTTGAGAAGAAACAGAAGCCACCAACATCTGACAAG AAAAAACGCAAAATTGAAAAGTAAAGTGGATGGTCAGAAATGTTACAAGTTTTTCCCCCTTTCTCAATTCGCATATGCTAACTTTTAGAGGTAAAATCATGTGATGTTTCTCGAGCCTTTGCTGGCTGTTTTTTGGTGGTCGCATATGCCATCTTTTAGAGGTGAAATCATGTGATGTTTCTCGAGCCATTTCTGGCTGTGTCTGTGTAAGATTTGTTAGCGACAATTTGCTGATACTATGAGATCACGTTGAATGGGAAAAAAAAAA                          ]
[+] EMBL C98080               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCTGANCGACATGCTCGAACTGTAGCTCTTGCTCAGCAAGTACNAAAATCAAAGAAGGATTCTGGCAGGCAGCGCCAAAACCGAAGGAGGAAGAAGAGATCTCAGAATCCATGTTGAGAAGAAACAGAAGCCACTAACATCTGACAAG AAAAANCGCAAAATTGAAAAGTAAAGTGGATGGTCAGAAATGTTACAAGTTTTTCCCCCTTTCTCAATTCGCATATGCTAACTTTTAGAGGTAAAATCATGTGATGTTTCTCGAGCCTTTGCTGGCTGTTTTTTGGTGGTCGCATATGCCATCTTTTAGAGGTGAAATCATGTGATGTTTCTCGAGCCATTTCTGGCTGTGTCTGTGTAAGATTTGTTAGCGACAATTTGCTGATACTATGAGATCACGTTGAATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8718#0
GCGGCGGTACTTCCGACAGGACCACGGCGACAAGAGCGGTTCCTCATCGTCCTCTTCCTC
CTCCTCCTCGGGTTCGGACTCGGACAGGGAACCTGCGGAGGAAGCGGCCCCCACTGAGGA
AGTAGAGGAACAGCAGGAAGAACAAGAAGATGAGCAGCATGTGGGGGAGGAGGATCCGGG
AGAAGAGCAGGAAGAGGAGCTAGAGCCAGTGGTCGAACAAGAGAGTGGGTTCCTATAATT
TGTGAGTTTACATTTTCTCGTATTTGCGCAACTGGGATTTCCGAAGTGACCACGTGAGTT
TTGCTTTGTTTCCTCATGCCAACCAGGTTCAGGGTACCAAAGTGAGTACAGCTCCGGTAA
CGATGTTGATGAACCTTCTGCAGATAGTGATGAGCATATCATCCTAAGACATGAAGAAGA
TCCTGAGATAAATTCGTCTGTTAAGAGAGCCTCAAGTGGTAAAGCTGATTCAACCAAAGA
TGCATCTGACACGGATGATGCTCTTGAGGTTGATTTCAATAACTACATTCTGAAGTGCAA
ATCTGTGTACAAGTGCAAGCTTTGTCCTAGAATCATCTGCTTAAATGAGGAGATGGTCAG
GGTACATCTTAAATCAAAGAGACATGCTCGATCAAAGAAATTGTTAGGAGAAGGTAGGCT
TAAGTTGATGCTTAATAGTGATGGTGAGTTGGAGGAAGAGCAAGAGACACATGCTGAACG
ACATGCTCGAACTGTAGCTCTTGCTCAGCAAGTACAAAAATCAAAGAAGGATTCTGGCAG
GCAGCGCCAAAACCGAAGGAGGAAGAAGAGATCTCAGAATCATGTTGAGAAGAAACAGAA
GCCACTAACATCTGACAAGAAAAAACGCAAAATTGAAAAGTAAAGTGGATGGTCAGAAAT
GTTACAAGTTTTTCCCCCTTTCTCAATTCGCATATGCTAACTTTTAGAGGTAAAATCATG
TGATGTTTCTCGAGCCTTTGCTGGCTGTTTTTTGGTGGTCGCATATGCCATCTTTTAGAG
GTGAAATCATGTGATGTTTCTCGAGCCATTTCTGGCTGTGTCTGTGTAAGATTTGTTAGC
GACAATTTGCTGATACTATGAGATCACGTTGAATGGGAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

consensusID : consensus_8718#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 350
fasta sequence

                              [GCGGCGGTACTTCCGACAGGACCACGGCGACAAGAGCGGTTCCTCATCGTCCTCTTCCTCCTCCTCCTCGGGTTCGGACTCGGACAGGGAACCTGCGGAGGAAGCGGCCCCCACTGAGGAAGTAGAGGAACAGCAGGAAGAACAAGAAGATGAGCAGCATGTGGGGGAGGAGGATTCGGGAGAAGAGCAGGAAGAGGAGCTAGAAGCCAGTGGTCGAACAAGAGAGTGGGTTCCTATAATTTTGTTCAGGGTACCAAAGTGAGTTNAGCTCCGGGTAACGATGTTGATGAACCTTCTGCAGATAGTGATTGNGCCTTTCATCCTAAGAATTTAAGAAAATCCTGGGNAAA]

[+] EMBL AU075780             [GCGGCGGTACTTCCGACAGGACCACGGCGACAAGAGCGGTTCCTCATCGTCCTCTTCCTCCTCCTCCTCGGGTTCGGACTCGGACAGGGAACCTGCGGAGGAAGCGGCCCCCACTGAGGAAGTAGAGGAACAGCAGGAAGAACAAGAAGATGAGCAGCATGTGGGGGAGGAGGATTCGGGAGAAGAGCAGGAAGAGGAGCTAGAAGCCAGTGGTCGAACAAGAGAGTGGGTTCCTATAATTTTGTTCAGGGTACCAAAGTGAGTTNAGCTCCGGGTAACGATGTTGATGAACCTTCTGCAGATAGTGATTGNGCCTTTCATCCTAAGAATTTAAGAAAATCCTGGGNAAA]




>consensus_8718#1
GCGGCGGTACTTCCGACAGGACCACGGCGACAAGAGCGGTTCCTCATCGTCCTCTTCCTC
CTCCTCCTCGGGTTCGGACTCGGACAGGGAACCTGCGGAGGAAGCGGCCCCCACTGAGGA
AGTAGAGGAACAGCAGGAAGAACAAGAAGATGAGCAGCATGTGGGGGAGGAGGATTCGGG
AGAAGAGCAGGAAGAGGAGCTAGAAGCCAGTGGTCGAACAAGAGAGTGGGTTCCTATAAT
TTTGTTCAGGGTACCAAAGTGAGTTNAGCTCCGGGTAACGATGTTGATGAACCTTCTGCA
GATAGTGATTGNGCCTTTCATCCTAAGAATTTAAGAAAATCCTGGGNAAA

consensusID : consensus_8718#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 322
fasta sequence

                              [GCGGCGGTACTTCCGACAGGACCACGGCGACAAGAGCGGTTCCTCATCGTCCTCTTCCTCCTCCTCCTCGGGTTCGGACTCGGACAGGGAACCTGCGGAGGAAGCGGCCCCCACTGAGGAAGTAGAGGAACAGCAGGAAGAACAAGAAGATGAGCAGCATGTGGGGGAGGAGGATTCGGGAGAAGAGCAGGAAGAGGAGCTAGAGCCAGTGGTCGAACAAGAGAGTTCAGGGTACCAAAGTGAGTACAGCTCCGGTAACGATGTTGATGAACCTTCTGCAGATAGTGATGAGCATATCATCCTAAGACATGAAGAAGATCCT]

[+] EMBL OS0585A              [GCGGCGGTACTTCCGACAGGACCACGGCGACAAGAGCGGTTCCTCATCGTCCTCTTCCTCCTCCTCCTCGGGTTCGGACTCGGACAGGGAACCTGCGGAGGAAGCGGCCCCCACTGAGGAAGTAGAGGAACAGCAGGAAGAACAAGAAGATGAGCAGCATGTGGGGGAGGAGGATTCGGGAGAAGAGCAGGAAGAGGAGCTAGAGCCAGTGGTCGAACAAGAGAGTTCAGGGTACCAAAGTGAGTACAGCTCCGGTAACGATGTTGATGAACCTTCTGCAGATAGTGATGAGCATATCATCCTAAGACATGAAGAAGATCCT]




>consensus_8718#2
GCGGCGGTACTTCCGACAGGACCACGGCGACAAGAGCGGTTCCTCATCGTCCTCTTCCTC
CTCCTCCTCGGGTTCGGACTCGGACAGGGAACCTGCGGAGGAAGCGGCCCCCACTGAGGA
AGTAGAGGAACAGCAGGAAGAACAAGAAGATGAGCAGCATGTGGGGGAGGAGGATTCGGG
AGAAGAGCAGGAAGAGGAGCTAGAGCCAGTGGTCGAACAAGAGAGTTCAGGGTACCAAAG
TGAGTACAGCTCCGGTAACGATGTTGATGAACCTTCTGCAGATAGTGATGAGCATATCAT
CCTAAGACATGAAGAAGATCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8718#0      GCGGCGGTACTTCCGACAGGACCACGGCGACAAGAGCGGTTCCTCATCGTCCTCTTCCTC 60
consensus_8718#2      GCGGCGGTACTTCCGACAGGACCACGGCGACAAGAGCGGTTCCTCATCGTCCTCTTCCTC 60
consensus_8718#1      GCGGCGGTACTTCCGACAGGACCACGGCGACAAGAGCGGTTCCTCATCGTCCTCTTCCTC 60
                      ************************************************************

consensus_8718#0      CTCCTCCTCGGGTTCGGACTCGGACAGGGAACCTGCGGAGGAAGCGGCCCCCACTGAGGA 120
consensus_8718#2      CTCCTCCTCGGGTTCGGACTCGGACAGGGAACCTGCGGAGGAAGCGGCCCCCACTGAGGA 120
consensus_8718#1      CTCCTCCTCGGGTTCGGACTCGGACAGGGAACCTGCGGAGGAAGCGGCCCCCACTGAGGA 120
                      ************************************************************

consensus_8718#0      AGTAGAGGAACAGCAGGAAGAACAAGAAGATGAGCAGCATGTGGGGGAGGAGGATCCGGG 180
consensus_8718#2      AGTAGAGGAACAGCAGGAAGAACAAGAAGATGAGCAGCATGTGGGGGAGGAGGATTCGGG 180
consensus_8718#1      AGTAGAGGAACAGCAGGAAGAACAAGAAGATGAGCAGCATGTGGGGGAGGAGGATTCGGG 180
                      ******************************************************* ****

consensus_8718#0      AGAAGAGCAGGAAGAGGAGCTAGA-GCCAGTGGTCGAACAAGAGAGTGGGTTCCTATAAT 239
consensus_8718#2      AGAAGAGCAGGAAGAGGAGCTAGA-GCCAGTGGTCGAACAAGAGAGT------------- 226
consensus_8718#1      AGAAGAGCAGGAAGAGGAGCTAGAAGCCAGTGGTCGAACAAGAGAGTGGGTTCCTATAAT 240
                      ************************ **********************             

consensus_8718#0      TTGTGAGTTTACATTTTCTCGTATTTGCGCAACTGGGATTTCCGAAGTGACCACGTGAGT 299
consensus_8718#2      ------------------------------------------------------------
consensus_8718#1      TTT--------------------------------------------------------- 243
                                                                                  

consensus_8718#0      TTTGCTTTGTTTCCTCATGCCAACCAGGTTCAGGGTACCAAAGTGAGTACAGCTCCGG-T 358
consensus_8718#2      -----------------------------TCAGGGTACCAAAGTGAGTACAGCTCCGG-T 256
consensus_8718#1      ---------------------------GTTCAGGGTACCAAAGTGAGTTNAGCTCCGGGT 276
                                                   *******************  ******** *

consensus_8718#0      AACGATGTTGATGAACCTTCTGCAGATAGTGAT-GAGCATATCATCCTAAGACATGAAGA 417
consensus_8718#2      AACGATGTTGATGAACCTTCTGCAGATAGTGAT-GAGCATATCATCCTAAGACATGAAGA 315
consensus_8718#1      AACGATGTTGATGAACCTTCTGCAGATAGTGATTGNGCCTTTCATCCTAAGAATTTAAGA 336
                      ********************************* * ** * ***********  * ****

consensus_8718#0      AGATCCTGAGATAAATTCGTCTGTTAAGAGAGCCTCAAGTGGTAAAGCTGATTCAACCAA 477
consensus_8718#2      AGATCCT----------------------------------------------------- 322
consensus_8718#1      AAATCCTGGGNAAA---------------------------------------------- 350
                      * *****                                                     

consensus_8718#0      AGATGCATCTGACACGGATGATGCTCTTGAGGTTGATTTCAATAACTACATTCTGAAGTG 537
consensus_8718#2      ------------------------------------------------------------
consensus_8718#1      ------------------------------------------------------------
                                                                                  

consensus_8718#0      CAAATCTGTGTACAAGTGCAAGCTTTGTCCTAGAATCATCTGCTTAAATGAGGAGATGGT 597
consensus_8718#2      ------------------------------------------------------------
consensus_8718#1      ------------------------------------------------------------
                                                                                  

consensus_8718#0      CAGGGTACATCTTAAATCAAAGAGACATGCTCGATCAAAGAAATTGTTAGGAGAAGGTAG 657
consensus_8718#2      ------------------------------------------------------------
consensus_8718#1      ------------------------------------------------------------
                                                                                  

consensus_8718#0      GCTTAAGTTGATGCTTAATAGTGATGGTGAGTTGGAGGAAGAGCAAGAGACACATGCTGA 717
consensus_8718#2      ------------------------------------------------------------
consensus_8718#1      ------------------------------------------------------------
                                                                                  

consensus_8718#0      ACGACATGCTCGAACTGTAGCTCTTGCTCAGCAAGTACAAAAATCAAAGAAGGATTCTGG 777
consensus_8718#2      ------------------------------------------------------------
consensus_8718#1      ------------------------------------------------------------
                                                                                  

consensus_8718#0      CAGGCAGCGCCAAAACCGAAGGAGGAAGAAGAGATCTCAGAATCATGTTGAGAAGAAACA 837
consensus_8718#2      ------------------------------------------------------------
consensus_8718#1      ------------------------------------------------------------
                                                                                  

consensus_8718#0      GAAGCCACTAACATCTGACAAGAAAAAACGCAAAATTGAAAAGTAAAGTGGATGGTCAGA 897
consensus_8718#2      ------------------------------------------------------------
consensus_8718#1      ------------------------------------------------------------
                                                                                  

consensus_8718#0      AATGTTACAAGTTTTTCCCCCTTTCTCAATTCGCATATGCTAACTTTTAGAGGTAAAATC 957
consensus_8718#2      ------------------------------------------------------------
consensus_8718#1      ------------------------------------------------------------
                                                                                  

consensus_8718#0      ATGTGATGTTTCTCGAGCCTTTGCTGGCTGTTTTTTGGTGGTCGCATATGCCATCTTTTA 1017
consensus_8718#2      ------------------------------------------------------------
consensus_8718#1      ------------------------------------------------------------
                                                                                  

consensus_8718#0      GAGGTGAAATCATGTGATGTTTCTCGAGCCATTTCTGGCTGTGTCTGTGTAAGATTTGTT 1077
consensus_8718#2      ------------------------------------------------------------
consensus_8718#1      ------------------------------------------------------------
                                                                                  

consensus_8718#0      AGCGACAATTTGCTGATACTATGAGATCACGTTGAATGGGAAAAAAAAAAAAAAAAAAAA 1137
consensus_8718#2      ------------------------------------------------------------
consensus_8718#1      ------------------------------------------------------------
                                                                                  

consensus_8718#0      AAAAAAAAAAAAAAAA 1153
consensus_8718#2      ----------------
consensus_8718#1      ----------------