These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8724#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 186 fasta sequence [GCCGAGCATATGTCCAGCTACGGTCCAGAGGCTAAACAGGATTACGCGGTACGCCTTGAAGGGCCGATTGTCGAAGATATTCTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCGGCACGACGCTGGTGGCGACGTCATCACAAAGCGGAAGAGAACCGCCAGCCGGGAGAAGCGCAGGTA] [+] EMBL CF340564 [GCCGAGCATATGTCCAGCTACGGTCCAGAGGCTAAACAGGATTACGCGGTACGCCTTGAAGGGCCGATTGTCGAAGATATTCTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCGGCACGACGCTGGTGGCGACGTCATCACAAAGCGGAAGAGAACCGCCAGCCGGGAGAAGCGCAGGTA] [+] EMBL CF340733 [GCCGAGCATATGTCCAGCTACGGTCCAGAGGCTAAACAGGATTACGCGGTACGCCTTGAAGGGCCGATTGTCGAAGATATTCTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCGGCACGACGCTGGTGGCGACGTCATCACAAAGCGGAAGAGAACCGCCAGCCGGGAGAAGCGCAGGTA] [+] EMBL CF339400 [GCCGAGCATATGTCCAGCTACGGTCCAGAGGCTAAACAGGATTACGCGGTACGCCTTGAAGGGCCGATTGTCGAAGATATTCTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCGGCACGACGCTGGTGGCGACGTCATCACAAAGCGGAAGAGAACCGCCAGCCGGGAGAAGCGCAGGTA] [+] EMBL CF340731 [ AACAGGATTACGCGGTACGCCTTGAAGGGCCGATTGTCGAAGATATTCTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCGGCACGACGCTGGTGGCGACGTCATCACAAAGCGGAAGAGAACCGCCAGCCGGGAGAAGCGCAGGTA] consensusID : consensus_8724#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 126 fasta sequence [GGCCCATTGTCGAACATATTGTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCGGCACGACGCTAGTGGCTGACGTGATCACAAAGCGGAAGAGAACCGCCAGCCGTGAGAAGCACAAGTA] [+] EMBL CF340446 [GGCCCATTGTCGAACATATTGTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCGGCACGACGCTAGTGGCTGACGTGATCACAAAGCGGAAGAGAACCGCCAGCCGTGAGAAGCACAAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8724#0 GCCGAGCATATGTCCAGCTACGGTCCAGAGGCTAAACAGGATTACGCGGTACGCCTTGAA 60 consensus_8724#1 ------------------------------------------------------------ consensus_8724#0 GGGCCGATTGTCGAAGATATTCTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCG 120 consensus_8724#1 -GGCCCATTGTCGAACATATTGTCCAGTTTGAGCTGGAAAACCTGCCTGGACAGAGCGCG 59 **** ********* ***** ************************************** consensus_8724#0 GCACGACGCTGGTGGC-GACGTCATCACAAAGCGGAAGAGAACCGCCAGCCGGGAGAAGC 179 consensus_8724#1 GCACGACGCTAGTGGCTGACGTGATCACAAAGCGGAAGAGAACCGCCAGCCGTGAGAAGC 119 ********** ***** ***** ***************************** ******* consensus_8724#0 GCAGGTA 186 consensus_8724#1 ACAAGTA 126 ** *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||