| These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs : 
 consensusID : consensus_8730#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1890 fasta sequence 
                              [TTCTCCTCCACACCACCGCGCCTCACTAGCCTCGTGCCCTCGTAGCTGCCCTCGCGCGCCACCACCATGCCGTCCGCCATGAACATGATCACCGCCGCCTTCCGCCGATACCTCGGCTGCTTCTCCGCCGGATCAACCCACCGCCGCCGCCGCGGCGCCGCTGAACCCGTCCTCGCCGGCTCACTTACACTTCCCGCCGCCGCCGGCGGTGACAACGCGGCCAGGCGCCTTGATGTCGTCGTCCCCGCCCCCAGCCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGCCTTCCTGGCCATGTCCGCTCCGCCATCGTGTCGCGCCTCCCGGTCGCGGACGCCGCCGCTCGCACCGGCGTGCTGTCGTCGTCGCAGTGGAACGGGCTCTGGTCGTCGACGCCGCTCGTGTTCCAGGACTCCGACCTCATCCTCGCCGCGAACTTCACCAGCGTGGCCCCCGTCGCCGCCACCGTGTCCCGCGTCATCGAGAACCACCCGGGCCCCTTCCACACCGTCACCCTGACCAGCTACTTCCCGGAGTCCGAGCGGGACACCTTCGCCGGCTGGATCCGCGCCGTCGCCGCCAAGGGCGTCCGCGACCTCACCCTGCACAACATCCCCTGGTCGGGCCTCCACGTGCTCCCCGCCGACCTCCTCCAGTGCTGCGCCGCCCTGGAGCGCCTCCGCGTCTGCGTCTGGCGGTTCCCGGCCACGGCCGGCGTCCTCCACCCCGGCGGCGGCGACGGCGACGGCGCCGCGCCGCCGTCGTTCCCGCGCCTGAGGGAGCTCGTCCTCAACAGGAGCGCCATCGAGGAGGCCGACCTGGAGAACGTGGTGGCGTGCAGCCCGGCGCTGCGGACGCTGGTGCTCGCCTTCAGCCGTGGCGCGCCGGGGCGCGTCCGCCTCGCCAGCGGCAGCCTCCGGTGCGTCGTGCTGTGCCAGTCGCTGGTGGACGAGCTCGCCGTCGTCGCCGCGCCGCTGCTGGAGCGGATCGTGCTGCGGTGGTGCGCGTCGGGCACCCACCACGGTCACCTCATGAGGATCAGGATCAGCCGGGCCTCGTCGATCAAGGCGATTGGTTACCTCAAACCAACCTGTCATGGCCTGCATATTGATGCCACTGTTATAAAGCCTGGGATAACGGCTAGCCCCGATGAAGTGGCTGTTCCAAGCGTCAAGATATTGGGTTTACAAGTTCGATTTGGAGTTGCTGCGGAAGCAACGATGGTGTCCTGCATGCTCAGATGTTTTCCTAACGTTGAAACGCTGCATATCATGCCTATCGAAGATCCTCAGTCTACCCAGCTTGATGACTTTGAGTTCTGGGAGGAGATCAATTCAGTTGAATGTGTCAGATCCAGCATCAAGAAGGTAGTGTTCCATGGGTTCTCCTGGAAGAATTCTGAGATAGCGTTCATCAATTCCATCGCCGAAGGAGGACTGGTGCTCGAGAAGATCTGTATCTTCCAGAGTCGACATGGTGCTGCCCCAGATGATGATGAACTGAATGCTAAGCTGAGCATGGTAGCTTCTCTGAACATCGGCCTTGGCCGTACAGAGATCATATTTTCAGGTGAAGATCCAACCTGGTGCTATAGGGCGGCGGCTGATCTTTCTCGTGCTGATCCTTTTGATTGCTGCCGTTGAAGATCGATGTCTCTGTGCTTTGATCATCTTCGTACTATATATACATTTTGTGCTTCAGAATGTCACACAGTCTGCAAAGGTTGCTCAAGGTAGTTATATAGCGAATAAATATGTGACATCTGGAAATTTTATCATGTGTGTGTACCA-GTTAAATTCTATCCTGTGGTATTAATAAATGGTACTGGCGAGGCAGTGTGCAACGCTTTGTACTGCTGGATTGTGTTTTAAAAA]
[+] EMBL AK107371             [TTCTCCTCCACACCACCGCGCCTCACTAGCCTCGTGCCCTCGTAGCTGCCCTCGCGCGCCACCACCATGCCGTCCGCCATGAACATGATCACCGCCGCCTTCCGCCGATACCTCGGCTGCTTCTCCGCCGGATCAACCCACCGCCGCCGCCGCGGCGCCGCTGAACCCGTCCTCGCCGGCTCACTTACACTTCCCGCCGCCGCCGGCGGTGACAACGCGGCCAGGCGCCTTGATGTCGTCGTCCCCGCCCCCAGCCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGCCTTCCTGGCCATGTCCGCTCCGCCATCGTGTCGCGCCTCCCGGTCGCGGACGCCGCCGCTCGCACCGGCGTGCTGTCGTCGTCGCAGTGGAACGGGCTCTGGTCGTCGACGCCGCTCGTGTTCCAGGACTCCGACCTCATCCTCGCCGCGAACTTCACCAGCGTGGCCCCCGTCGCCGCCACCGTGTCCCGCGTCATCGAGAACCACCCGGGCCCCTTCCACACCGTCACCCTGACCAGCTACTTCCCGGAGTCCGAGCGGGACACCTTCGCCGGCTGGATCCGCGCCGTCGCCGCCAAGGGCGTCCGCGACCTCACCCTGCACAACATCCCCTGGTCGGGCCTCCACGTGCTCCCCGCCGACCTCCTCCAGTGCTGCGCCGCCCTGGAGCGCCTCCGCGTCTGCGTCTGGCGGTTCCCGGCCACGGCCGGCGTCCTCCACCCCGGCGGCGGCGACGGCGACGGCGCCGCGCCGCCGTCGTTCCCGCGCCTGAGGGAGCTCGTCCTCAACAGGAGCGCCATCGAGGAGGCCGACCTGGAGAACGTGGTGGCGTGCAGCCCGGCGCTGCGGACGCTGGTGCTCGCCTTCAGCCGTGGCGCGCCGGGGCGCGTCCGCCTCGCCAGCGGCAGCCTCCGGTGCGTCGTGCTGTGCCAGTCGCTGGTGGACGAGCTCGCCGTCGTCGCCGCGCCGCTGCTGGAGCGGATCGTGCTGCGGTGGTGCGCGTCGGGCACCCACCACGGTCACCTCATGAGGATCAGGATCAGCCGGGCCTCGTCGATCAAGGCGATTGGTTACCTCAAACCAACCTGTCATGGCCTGCATATTGATGCCACTGTTATAAAGCCTGGGATAACGGCTAGCCCCGATGAAGTGGCTGTTCCAAGCGTCAAGATATTGGGTTTACAAGTTCGATTTGGAGTTGCTGCGGAAGCAACGATGGTGTCCTGCATGCTCAGATGTTTTCCTAACGTTGAAACGCTGCATATCATGCCTATCGAAGATCCTCAGTCTACCCAGCTTGATGACTTTGAGTTCTGGGAGGAGATCAATTCAGTTGAATGTGTCAGATCCAGCATCAAGAAGGTAGTGTTCCATGGGTTCTCCTGGAAGAATTCTGAGATAGCGTTCATCAATTCCATCGCCGAAGGAGGACTGGTGCTCGAGAAGATCTGTATCTTCCAGAGTCGACATGGTGCTGCCCCAGATGATGATGAACTGAATGCTAAGCTGAGCATGGTAGCTTCTCTGAACATCGGCCTTGGCCGTACAGAGATCATATTTTCAGGTGAAGATCCAACCTGGTGCTATAGGGCGGCGGCTGATCTTTCTCGTGCTGATCCTTTTGATTGCTGCCGTTGAAGATCGATGTCTCTGTGCTTTGATCATCTTCGTACTATATATACATTTTGTGCTTCAGAATGTCACACAGTCTGCAAAGGTTGCTCAAGGTAGTTATATAGCGAATAAATATGTGACATCTGGAAATTTTATCATGTGTGTGTACCA GTTAAATTCTATCCTGTGGTATTAATAAATGGTACTGGCGAGGCAGTGTGCAACGCTTTGTACTGCTGG               ]
[+] EMBL AU182612             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGCTCGAGAAGATCTGTATCTTCCAGAGTCGACATGGTGCTGCCCCAGATGATGATGAACTGAATGCTAAGCTGAGCATGGTAGCTTCTCTGAACATCGGCCTTGGCCGTACAGAGATCATATTTTCAGGTGAAGATCCAACCTGGTGCTATAGGGCGGCGGCTGATCTTTCTCGTGCTGATCCTTTTGATTGCTGCCGTTGAAGATCGATGTCTCTGTGCTTTGATCATCTTCGTACTATATATACATTTTGTGCTTCAGAATGTCACACAGTCTGCAAAGGTTGCTCAAGGTAGTTATATAGCGAATAAATATGTGACATCTGGAAATTTTATCATGTGTGTGTACCA GTTAAATTCTATCCTGTGGTATTAATAAATGGTACTGGCGAGGCAGTGTGCAACGCTTTGTACTGCTGGATTGTGTTTTAAAAA]
[+] EMBL AU172719             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTGTATCTTCCANAGTCGACATGGTGCTGCCCCAGATGATGATGAACTGAATGCTAAGCTGAGCATGGTAGCTTCTCTGAACATCGGCCTTGGCCGTACAGAGATCATATTTTCAGGTGAAGATCCAACCTGGTGCTATAGGGCGGCGGCTGATCTTTCTCGTGCTGATCCTTTTGATTGCTGCCGTTGAAGATCGATGTCTCTGTGCTTTGATCATCTTCGTACTATATATACATTTTGTGCTTCAGAATGTCACACAGTCTGCAAAGGTTGCTCAAGGTAGTTATATAGCGAATAAATATGTGACATCTGGAAATTTTATCATGTGTGTGTACCANGTTAAATTCTATCCTGTGGTATTAATAAATGGTACTGGCGAGGCAGTGTGCAACGCTTTGTACTGCTGGATTGTGTTTTAAAAA]
consensusID : consensus_8730#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence 
                              [GNGTCNTNGCGTNTCTCCGGCCGGATCAACCCACCNNCGCCNCCGGCNGACTGAACCCGTCCTCNNCNGCTCACTTACACTTNCCGCCGCCGCCGTGANCAACGCGGCCAGGCGNCTTGATGTCGTCGTCCCCGCCCCCAGNCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGCCTTNCTGGCCATGTCCGCTCCGNCATCGTGTCGCGACTCCCGGTCGGGACGCTGCCGNTCGCACCGGGTGCTTGTNGTCGTCGCA]
[+] EMBL OSC767               [GNGTCNTNGCGTNTCTCCGGCCGGATCAACCCACCNNCGCCNCCGGCNGACTGAACCCGTCCTCNNCNGCTCACTTACACTTNCCGCCGCCGCCGTGANCAACGCGGCCAGGCGNCTTGATGTCGTCGTCCCCGCCCCCAGNCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGCCTTNCTGGCCATGTCCGCTCCGNCATCGTGTCGCGACTCCCGGTCGGGACGCTGCCGNTCGCACCGGGTGCTTGTNGTCGTCGCA]
consensusID : consensus_8730#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 102 fasta sequence 
                              [CCCNCCCCCAGCCGCCCTNATGGTTTAACTTTAAGCGGCGAAGATTTAATCGGTAGCCTTCCTGGCCATGTCCGCTCCGCCATCGTTTCGCGCCTCCCGGTC]
[+] EMBL OSC682               [CCCNCCCCCAGCCGCCCTNATGGTTTAACTTTAAGCGGCGAAGATTTAATCGGTAGCCTTCCTGGCCATGTCCGCTCCGCCATCGTTTCGCGCCTCCCGGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8730#0      TTCTCCTCCACACCACCGCGCCTCACTAGCCTCGTGCCCTCGTAGCTGCCCTCGCGCGCC 60
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      ACCACCATGCCGTCCGCCATGAACATGATCACCGCCGCCTTCCGCCGATACCTCGGCTGC 120
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      -----------------------------------------------GNGTCNTNGCGTN 13
                                                                                  
consensus_8730#0      TTCTCCGCCGGATCAACCCACCGCCGCCGCCGCGGCGCCGCTGAACCCGTCCTCGCCGGC 180
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      TCTCCGGCCGGATCAACCCACCNNCGCCNCCGGCNGAC---TGAACCCGTCCTCNNCNGC 70
                                                                                  
consensus_8730#0      TCACTTACACTTCCCGCCGCCGCCGGCGGTGACAACGCGGCCAGGCGCCTTGATGTCGTC 240
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      TCACTTACACTTNCCGCCGCCGCCGTGAN---CAACGCGGCCAGGCGNCTTGATGTCGTC 127
                                                                                  
consensus_8730#0      GTCCCCGCCCCCAGCCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGC 300
consensus_8730#2      ---CCCNCCCCCAGCCGCCCTNATGGTTTAACTTTAAGCGGCGAAGATTTAATCGGTAGC 57
consensus_8730#1      GTCCCCGCCCCCAGNCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGC 187
                         *** ******* ****** ***** * *** * ************** *********
consensus_8730#0      CTTCCTGGCCATGTCCGCTCCGCCATCGTGTCGCGCCTCCCGGTCGCGGACGCCGCCGCT 360
consensus_8730#2      CTTCCTGGCCATGTCCGCTCCGCCATCGTTTCGCGCCTCCCGGTC--------------- 102
consensus_8730#1      CTTNCTGGCCATGTCCGCTCCGNCATCGTGTCGCGACTCCCGGTCG-GGACGCTGCCGNT 246
                      *** ****************** ****** ***** *********               
consensus_8730#0      CGCACCGGCGTGCTGTCGTCGTCGCAGTGGAACGGGCTCTGGTCGTCGACGCCGCTCGTG 420
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      CGCACCGGGTGCTTGTNGTCGTCGCA---------------------------------- 272
                                                                                  
consensus_8730#0      TTCCAGGACTCCGACCTCATCCTCGCCGCGAACTTCACCAGCGTGGCCCCCGTCGCCGCC 480
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      ACCGTGTCCCGCGTCATCGAGAACCACCCGGGCCCCTTCCACACCGTCACCCTGACCAGC 540
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      TACTTCCCGGAGTCCGAGCGGGACACCTTCGCCGGCTGGATCCGCGCCGTCGCCGCCAAG 600
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      GGCGTCCGCGACCTCACCCTGCACAACATCCCCTGGTCGGGCCTCCACGTGCTCCCCGCC 660
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      GACCTCCTCCAGTGCTGCGCCGCCCTGGAGCGCCTCCGCGTCTGCGTCTGGCGGTTCCCG 720
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      GCCACGGCCGGCGTCCTCCACCCCGGCGGCGGCGACGGCGACGGCGCCGCGCCGCCGTCG 780
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      TTCCCGCGCCTGAGGGAGCTCGTCCTCAACAGGAGCGCCATCGAGGAGGCCGACCTGGAG 840
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      AACGTGGTGGCGTGCAGCCCGGCGCTGCGGACGCTGGTGCTCGCCTTCAGCCGTGGCGCG 900
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      CCGGGGCGCGTCCGCCTCGCCAGCGGCAGCCTCCGGTGCGTCGTGCTGTGCCAGTCGCTG 960
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      GTGGACGAGCTCGCCGTCGTCGCCGCGCCGCTGCTGGAGCGGATCGTGCTGCGGTGGTGC 1020
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      GCGTCGGGCACCCACCACGGTCACCTCATGAGGATCAGGATCAGCCGGGCCTCGTCGATC 1080
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      AAGGCGATTGGTTACCTCAAACCAACCTGTCATGGCCTGCATATTGATGCCACTGTTATA 1140
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      AAGCCTGGGATAACGGCTAGCCCCGATGAAGTGGCTGTTCCAAGCGTCAAGATATTGGGT 1200
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      TTACAAGTTCGATTTGGAGTTGCTGCGGAAGCAACGATGGTGTCCTGCATGCTCAGATGT 1260
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      TTTCCTAACGTTGAAACGCTGCATATCATGCCTATCGAAGATCCTCAGTCTACCCAGCTT 1320
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      GATGACTTTGAGTTCTGGGAGGAGATCAATTCAGTTGAATGTGTCAGATCCAGCATCAAG 1380
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      AAGGTAGTGTTCCATGGGTTCTCCTGGAAGAATTCTGAGATAGCGTTCATCAATTCCATC 1440
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      GCCGAAGGAGGACTGGTGCTCGAGAAGATCTGTATCTTCCAGAGTCGACATGGTGCTGCC 1500
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      CCAGATGATGATGAACTGAATGCTAAGCTGAGCATGGTAGCTTCTCTGAACATCGGCCTT 1560
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      GGCCGTACAGAGATCATATTTTCAGGTGAAGATCCAACCTGGTGCTATAGGGCGGCGGCT 1620
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      GATCTTTCTCGTGCTGATCCTTTTGATTGCTGCCGTTGAAGATCGATGTCTCTGTGCTTT 1680
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      GATCATCTTCGTACTATATATACATTTTGTGCTTCAGAATGTCACACAGTCTGCAAAGGT 1740
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      TGCTCAAGGTAGTTATATAGCGAATAAATATGTGACATCTGGAAATTTTATCATGTGTGT 1800
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      GTACCAGTTAAATTCTATCCTGTGGTATTAATAAATGGTACTGGCGAGGCAGTGTGCAAC 1860
consensus_8730#2      ------------------------------------------------------------
consensus_8730#1      ------------------------------------------------------------
                                                                                  
consensus_8730#0      GCTTTGTACTGCTGGATTGTGTTTTAAAAA 1890
consensus_8730#2      ------------------------------
consensus_8730#1      ------------------------------
                                                    
 | 
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||