These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8730#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1890 fasta sequence [TTCTCCTCCACACCACCGCGCCTCACTAGCCTCGTGCCCTCGTAGCTGCCCTCGCGCGCCACCACCATGCCGTCCGCCATGAACATGATCACCGCCGCCTTCCGCCGATACCTCGGCTGCTTCTCCGCCGGATCAACCCACCGCCGCCGCCGCGGCGCCGCTGAACCCGTCCTCGCCGGCTCACTTACACTTCCCGCCGCCGCCGGCGGTGACAACGCGGCCAGGCGCCTTGATGTCGTCGTCCCCGCCCCCAGCCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGCCTTCCTGGCCATGTCCGCTCCGCCATCGTGTCGCGCCTCCCGGTCGCGGACGCCGCCGCTCGCACCGGCGTGCTGTCGTCGTCGCAGTGGAACGGGCTCTGGTCGTCGACGCCGCTCGTGTTCCAGGACTCCGACCTCATCCTCGCCGCGAACTTCACCAGCGTGGCCCCCGTCGCCGCCACCGTGTCCCGCGTCATCGAGAACCACCCGGGCCCCTTCCACACCGTCACCCTGACCAGCTACTTCCCGGAGTCCGAGCGGGACACCTTCGCCGGCTGGATCCGCGCCGTCGCCGCCAAGGGCGTCCGCGACCTCACCCTGCACAACATCCCCTGGTCGGGCCTCCACGTGCTCCCCGCCGACCTCCTCCAGTGCTGCGCCGCCCTGGAGCGCCTCCGCGTCTGCGTCTGGCGGTTCCCGGCCACGGCCGGCGTCCTCCACCCCGGCGGCGGCGACGGCGACGGCGCCGCGCCGCCGTCGTTCCCGCGCCTGAGGGAGCTCGTCCTCAACAGGAGCGCCATCGAGGAGGCCGACCTGGAGAACGTGGTGGCGTGCAGCCCGGCGCTGCGGACGCTGGTGCTCGCCTTCAGCCGTGGCGCGCCGGGGCGCGTCCGCCTCGCCAGCGGCAGCCTCCGGTGCGTCGTGCTGTGCCAGTCGCTGGTGGACGAGCTCGCCGTCGTCGCCGCGCCGCTGCTGGAGCGGATCGTGCTGCGGTGGTGCGCGTCGGGCACCCACCACGGTCACCTCATGAGGATCAGGATCAGCCGGGCCTCGTCGATCAAGGCGATTGGTTACCTCAAACCAACCTGTCATGGCCTGCATATTGATGCCACTGTTATAAAGCCTGGGATAACGGCTAGCCCCGATGAAGTGGCTGTTCCAAGCGTCAAGATATTGGGTTTACAAGTTCGATTTGGAGTTGCTGCGGAAGCAACGATGGTGTCCTGCATGCTCAGATGTTTTCCTAACGTTGAAACGCTGCATATCATGCCTATCGAAGATCCTCAGTCTACCCAGCTTGATGACTTTGAGTTCTGGGAGGAGATCAATTCAGTTGAATGTGTCAGATCCAGCATCAAGAAGGTAGTGTTCCATGGGTTCTCCTGGAAGAATTCTGAGATAGCGTTCATCAATTCCATCGCCGAAGGAGGACTGGTGCTCGAGAAGATCTGTATCTTCCAGAGTCGACATGGTGCTGCCCCAGATGATGATGAACTGAATGCTAAGCTGAGCATGGTAGCTTCTCTGAACATCGGCCTTGGCCGTACAGAGATCATATTTTCAGGTGAAGATCCAACCTGGTGCTATAGGGCGGCGGCTGATCTTTCTCGTGCTGATCCTTTTGATTGCTGCCGTTGAAGATCGATGTCTCTGTGCTTTGATCATCTTCGTACTATATATACATTTTGTGCTTCAGAATGTCACACAGTCTGCAAAGGTTGCTCAAGGTAGTTATATAGCGAATAAATATGTGACATCTGGAAATTTTATCATGTGTGTGTACCA-GTTAAATTCTATCCTGTGGTATTAATAAATGGTACTGGCGAGGCAGTGTGCAACGCTTTGTACTGCTGGATTGTGTTTTAAAAA] [+] EMBL AK107371 [TTCTCCTCCACACCACCGCGCCTCACTAGCCTCGTGCCCTCGTAGCTGCCCTCGCGCGCCACCACCATGCCGTCCGCCATGAACATGATCACCGCCGCCTTCCGCCGATACCTCGGCTGCTTCTCCGCCGGATCAACCCACCGCCGCCGCCGCGGCGCCGCTGAACCCGTCCTCGCCGGCTCACTTACACTTCCCGCCGCCGCCGGCGGTGACAACGCGGCCAGGCGCCTTGATGTCGTCGTCCCCGCCCCCAGCCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGCCTTCCTGGCCATGTCCGCTCCGCCATCGTGTCGCGCCTCCCGGTCGCGGACGCCGCCGCTCGCACCGGCGTGCTGTCGTCGTCGCAGTGGAACGGGCTCTGGTCGTCGACGCCGCTCGTGTTCCAGGACTCCGACCTCATCCTCGCCGCGAACTTCACCAGCGTGGCCCCCGTCGCCGCCACCGTGTCCCGCGTCATCGAGAACCACCCGGGCCCCTTCCACACCGTCACCCTGACCAGCTACTTCCCGGAGTCCGAGCGGGACACCTTCGCCGGCTGGATCCGCGCCGTCGCCGCCAAGGGCGTCCGCGACCTCACCCTGCACAACATCCCCTGGTCGGGCCTCCACGTGCTCCCCGCCGACCTCCTCCAGTGCTGCGCCGCCCTGGAGCGCCTCCGCGTCTGCGTCTGGCGGTTCCCGGCCACGGCCGGCGTCCTCCACCCCGGCGGCGGCGACGGCGACGGCGCCGCGCCGCCGTCGTTCCCGCGCCTGAGGGAGCTCGTCCTCAACAGGAGCGCCATCGAGGAGGCCGACCTGGAGAACGTGGTGGCGTGCAGCCCGGCGCTGCGGACGCTGGTGCTCGCCTTCAGCCGTGGCGCGCCGGGGCGCGTCCGCCTCGCCAGCGGCAGCCTCCGGTGCGTCGTGCTGTGCCAGTCGCTGGTGGACGAGCTCGCCGTCGTCGCCGCGCCGCTGCTGGAGCGGATCGTGCTGCGGTGGTGCGCGTCGGGCACCCACCACGGTCACCTCATGAGGATCAGGATCAGCCGGGCCTCGTCGATCAAGGCGATTGGTTACCTCAAACCAACCTGTCATGGCCTGCATATTGATGCCACTGTTATAAAGCCTGGGATAACGGCTAGCCCCGATGAAGTGGCTGTTCCAAGCGTCAAGATATTGGGTTTACAAGTTCGATTTGGAGTTGCTGCGGAAGCAACGATGGTGTCCTGCATGCTCAGATGTTTTCCTAACGTTGAAACGCTGCATATCATGCCTATCGAAGATCCTCAGTCTACCCAGCTTGATGACTTTGAGTTCTGGGAGGAGATCAATTCAGTTGAATGTGTCAGATCCAGCATCAAGAAGGTAGTGTTCCATGGGTTCTCCTGGAAGAATTCTGAGATAGCGTTCATCAATTCCATCGCCGAAGGAGGACTGGTGCTCGAGAAGATCTGTATCTTCCAGAGTCGACATGGTGCTGCCCCAGATGATGATGAACTGAATGCTAAGCTGAGCATGGTAGCTTCTCTGAACATCGGCCTTGGCCGTACAGAGATCATATTTTCAGGTGAAGATCCAACCTGGTGCTATAGGGCGGCGGCTGATCTTTCTCGTGCTGATCCTTTTGATTGCTGCCGTTGAAGATCGATGTCTCTGTGCTTTGATCATCTTCGTACTATATATACATTTTGTGCTTCAGAATGTCACACAGTCTGCAAAGGTTGCTCAAGGTAGTTATATAGCGAATAAATATGTGACATCTGGAAATTTTATCATGTGTGTGTACCA GTTAAATTCTATCCTGTGGTATTAATAAATGGTACTGGCGAGGCAGTGTGCAACGCTTTGTACTGCTGG ] [+] EMBL AU182612 [ TGCTCGAGAAGATCTGTATCTTCCAGAGTCGACATGGTGCTGCCCCAGATGATGATGAACTGAATGCTAAGCTGAGCATGGTAGCTTCTCTGAACATCGGCCTTGGCCGTACAGAGATCATATTTTCAGGTGAAGATCCAACCTGGTGCTATAGGGCGGCGGCTGATCTTTCTCGTGCTGATCCTTTTGATTGCTGCCGTTGAAGATCGATGTCTCTGTGCTTTGATCATCTTCGTACTATATATACATTTTGTGCTTCAGAATGTCACACAGTCTGCAAAGGTTGCTCAAGGTAGTTATATAGCGAATAAATATGTGACATCTGGAAATTTTATCATGTGTGTGTACCA GTTAAATTCTATCCTGTGGTATTAATAAATGGTACTGGCGAGGCAGTGTGCAACGCTTTGTACTGCTGGATTGTGTTTTAAAAA] [+] EMBL AU172719 [ CTGTATCTTCCANAGTCGACATGGTGCTGCCCCAGATGATGATGAACTGAATGCTAAGCTGAGCATGGTAGCTTCTCTGAACATCGGCCTTGGCCGTACAGAGATCATATTTTCAGGTGAAGATCCAACCTGGTGCTATAGGGCGGCGGCTGATCTTTCTCGTGCTGATCCTTTTGATTGCTGCCGTTGAAGATCGATGTCTCTGTGCTTTGATCATCTTCGTACTATATATACATTTTGTGCTTCAGAATGTCACACAGTCTGCAAAGGTTGCTCAAGGTAGTTATATAGCGAATAAATATGTGACATCTGGAAATTTTATCATGTGTGTGTACCANGTTAAATTCTATCCTGTGGTATTAATAAATGGTACTGGCGAGGCAGTGTGCAACGCTTTGTACTGCTGGATTGTGTTTTAAAAA] consensusID : consensus_8730#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [GNGTCNTNGCGTNTCTCCGGCCGGATCAACCCACCNNCGCCNCCGGCNGACTGAACCCGTCCTCNNCNGCTCACTTACACTTNCCGCCGCCGCCGTGANCAACGCGGCCAGGCGNCTTGATGTCGTCGTCCCCGCCCCCAGNCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGCCTTNCTGGCCATGTCCGCTCCGNCATCGTGTCGCGACTCCCGGTCGGGACGCTGCCGNTCGCACCGGGTGCTTGTNGTCGTCGCA] [+] EMBL OSC767 [GNGTCNTNGCGTNTCTCCGGCCGGATCAACCCACCNNCGCCNCCGGCNGACTGAACCCGTCCTCNNCNGCTCACTTACACTTNCCGCCGCCGCCGTGANCAACGCGGCCAGGCGNCTTGATGTCGTCGTCCCCGCCCCCAGNCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGCCTTNCTGGCCATGTCCGCTCCGNCATCGTGTCGCGACTCCCGGTCGGGACGCTGCCGNTCGCACCGGGTGCTTGTNGTCGTCGCA] consensusID : consensus_8730#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 102 fasta sequence [CCCNCCCCCAGCCGCCCTNATGGTTTAACTTTAAGCGGCGAAGATTTAATCGGTAGCCTTCCTGGCCATGTCCGCTCCGCCATCGTTTCGCGCCTCCCGGTC] [+] EMBL OSC682 [CCCNCCCCCAGCCGCCCTNATGGTTTAACTTTAAGCGGCGAAGATTTAATCGGTAGCCTTCCTGGCCATGTCCGCTCCGCCATCGTTTCGCGCCTCCCGGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8730#0 TTCTCCTCCACACCACCGCGCCTCACTAGCCTCGTGCCCTCGTAGCTGCCCTCGCGCGCC 60 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 ACCACCATGCCGTCCGCCATGAACATGATCACCGCCGCCTTCCGCCGATACCTCGGCTGC 120 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 -----------------------------------------------GNGTCNTNGCGTN 13 consensus_8730#0 TTCTCCGCCGGATCAACCCACCGCCGCCGCCGCGGCGCCGCTGAACCCGTCCTCGCCGGC 180 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 TCTCCGGCCGGATCAACCCACCNNCGCCNCCGGCNGAC---TGAACCCGTCCTCNNCNGC 70 consensus_8730#0 TCACTTACACTTCCCGCCGCCGCCGGCGGTGACAACGCGGCCAGGCGCCTTGATGTCGTC 240 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 TCACTTACACTTNCCGCCGCCGCCGTGAN---CAACGCGGCCAGGCGNCTTGATGTCGTC 127 consensus_8730#0 GTCCCCGCCCCCAGCCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGC 300 consensus_8730#2 ---CCCNCCCCCAGCCGCCCTNATGGTTTAACTTTAAGCGGCGAAGATTTAATCGGTAGC 57 consensus_8730#1 GTCCCCGCCCCCAGNCGCCCTGATGGTGTCACTGTGAGCGGCGAAGATTTCATCGGTAGC 187 *** ******* ****** ***** * *** * ************** ********* consensus_8730#0 CTTCCTGGCCATGTCCGCTCCGCCATCGTGTCGCGCCTCCCGGTCGCGGACGCCGCCGCT 360 consensus_8730#2 CTTCCTGGCCATGTCCGCTCCGCCATCGTTTCGCGCCTCCCGGTC--------------- 102 consensus_8730#1 CTTNCTGGCCATGTCCGCTCCGNCATCGTGTCGCGACTCCCGGTCG-GGACGCTGCCGNT 246 *** ****************** ****** ***** ********* consensus_8730#0 CGCACCGGCGTGCTGTCGTCGTCGCAGTGGAACGGGCTCTGGTCGTCGACGCCGCTCGTG 420 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 CGCACCGGGTGCTTGTNGTCGTCGCA---------------------------------- 272 consensus_8730#0 TTCCAGGACTCCGACCTCATCCTCGCCGCGAACTTCACCAGCGTGGCCCCCGTCGCCGCC 480 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 ACCGTGTCCCGCGTCATCGAGAACCACCCGGGCCCCTTCCACACCGTCACCCTGACCAGC 540 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 TACTTCCCGGAGTCCGAGCGGGACACCTTCGCCGGCTGGATCCGCGCCGTCGCCGCCAAG 600 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 GGCGTCCGCGACCTCACCCTGCACAACATCCCCTGGTCGGGCCTCCACGTGCTCCCCGCC 660 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 GACCTCCTCCAGTGCTGCGCCGCCCTGGAGCGCCTCCGCGTCTGCGTCTGGCGGTTCCCG 720 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 GCCACGGCCGGCGTCCTCCACCCCGGCGGCGGCGACGGCGACGGCGCCGCGCCGCCGTCG 780 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 TTCCCGCGCCTGAGGGAGCTCGTCCTCAACAGGAGCGCCATCGAGGAGGCCGACCTGGAG 840 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 AACGTGGTGGCGTGCAGCCCGGCGCTGCGGACGCTGGTGCTCGCCTTCAGCCGTGGCGCG 900 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 CCGGGGCGCGTCCGCCTCGCCAGCGGCAGCCTCCGGTGCGTCGTGCTGTGCCAGTCGCTG 960 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 GTGGACGAGCTCGCCGTCGTCGCCGCGCCGCTGCTGGAGCGGATCGTGCTGCGGTGGTGC 1020 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 GCGTCGGGCACCCACCACGGTCACCTCATGAGGATCAGGATCAGCCGGGCCTCGTCGATC 1080 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 AAGGCGATTGGTTACCTCAAACCAACCTGTCATGGCCTGCATATTGATGCCACTGTTATA 1140 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 AAGCCTGGGATAACGGCTAGCCCCGATGAAGTGGCTGTTCCAAGCGTCAAGATATTGGGT 1200 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 TTACAAGTTCGATTTGGAGTTGCTGCGGAAGCAACGATGGTGTCCTGCATGCTCAGATGT 1260 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 TTTCCTAACGTTGAAACGCTGCATATCATGCCTATCGAAGATCCTCAGTCTACCCAGCTT 1320 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 GATGACTTTGAGTTCTGGGAGGAGATCAATTCAGTTGAATGTGTCAGATCCAGCATCAAG 1380 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 AAGGTAGTGTTCCATGGGTTCTCCTGGAAGAATTCTGAGATAGCGTTCATCAATTCCATC 1440 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 GCCGAAGGAGGACTGGTGCTCGAGAAGATCTGTATCTTCCAGAGTCGACATGGTGCTGCC 1500 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 CCAGATGATGATGAACTGAATGCTAAGCTGAGCATGGTAGCTTCTCTGAACATCGGCCTT 1560 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 GGCCGTACAGAGATCATATTTTCAGGTGAAGATCCAACCTGGTGCTATAGGGCGGCGGCT 1620 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 GATCTTTCTCGTGCTGATCCTTTTGATTGCTGCCGTTGAAGATCGATGTCTCTGTGCTTT 1680 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 GATCATCTTCGTACTATATATACATTTTGTGCTTCAGAATGTCACACAGTCTGCAAAGGT 1740 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 TGCTCAAGGTAGTTATATAGCGAATAAATATGTGACATCTGGAAATTTTATCATGTGTGT 1800 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 GTACCAGTTAAATTCTATCCTGTGGTATTAATAAATGGTACTGGCGAGGCAGTGTGCAAC 1860 consensus_8730#2 ------------------------------------------------------------ consensus_8730#1 ------------------------------------------------------------ consensus_8730#0 GCTTTGTACTGCTGGATTGTGTTTTAAAAA 1890 consensus_8730#2 ------------------------------ consensus_8730#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||