These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 650 fasta sequence [GCGGTACTGGCGCTCCATACGGTAGGCGACGTTTGCCATCTCTTTACCGATGGTTGACGGCGTGGCTGGCTGACCGTGGGTACGAGACAGCAGCGGGATATCGCGATACTGAACGGCGAGATCTTTAATGCCATCAATCAGTTGACGCCAGTATGGCAGGATCACTTCATCACGCGCGGTTTTCAGCATTAATGCGTGGGAGAGGTTATTGATATCTTCCGAAGTACAGGCAAAGTGGATGAATTCAGAAACCGCGTGCAGTTCCGGGATCTCCGCCACTTTTTCTTTCAGGAAATACTCAACCGCTTTAACGTCGTGGTTAGTGGTACGCTCGATAGTTTTGATGCGCGCCGCATCTTCTTCGCTGAAACTGGCGACGATTGCATCAAGGTAACCGATTGCGTCGGCAGCAAAAGCAGGAACTTCCTTGATCGCTGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATCGACAGGGGAAACGGCGGTCAGTGAGGATAATTCCATAGATCACAACTCCGGGGTTAAATGAGCAAGAATTTGTTTTGCCTGAGTGGTCAGGCGATTAC] [+] EMBL CF340392 [GCGGTACTGGCGCTCCATACGGTAGGCGACGTTTGCCATCTCTTTACCGATGGTTGACGGCGTGGCTGGCTGACCGTGGGTACGAGACAGCAGCGGGATATCGCGATACTGAACGGCGAGATCTTTAATGCCATCAATCAGTTGACGCCAGTATGGCAGGATCACTTCATCACGCGCGGTTTTCAGCATTAATGCGTGGGAGAGGTTATTGATATCTTCCGAAGTACAGGCAAAGTGGATGAATTCAGAAACCGCGTGCAGTTCCGGGATCTCCGCCACTTTTTCTTTCAGGAAATACTCAACCGCTTTAACGTCGTGGTTAGTGGTACGCTCGATAGTTTTGATGCGCGCCGCATCTTCTTCGCTGAAACTGGCGACGATTGCATCAAGGTAACCGATTGCGTCGGCAGCAAAAGCAGGAACTTCCTTGATCGCTGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATCGACAGGGGAAACGGCGGTCAGTGAGGATAATTCCATAGATCACAACTCCGGGGTTAAATGAGCAAGAATTTGTTTTGCCTGAGTGGTCAGGCGATTAC] [+] EMBL CF339861 [GCGGTACTGGCGCTCCATACGGTAGGCGACGTTTGCCATCTCTTTACCGATGGTTGACGGCGTGGCTGGCTGACCGTGGGTACGAGACAGCAGCGGGATATCGCGATACTGAACGGCGAGATCTTTAATGCCATCAATCAGTTGACGCCAGTATGGCAGGATCACTTCATCACGCGCGGTTTTCAGCATTAATGCGTGGGAGAGGTTATTGATATCTTCCGAAGTACAGGCAAAGTGGATGAATTCAGAAACCGCGTGCAGTTCCGGGATCTCCGCCACTTTTTCTTTCAGGAAATACTCAACCGCTTTAACGTCGTGGTTAGTGGTACGCTCGATAGTTTTGATGCGCGCCGCATCTTCTTCGCTGAAACTGGCGACGATTGCATCAAGGTAACCGATTGCGTCGGCAGCAAAAGCAGGAACTTCCTTGATCGCTGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTNTATCGCCGTAGCGTCCATCGACAGGGGAAACGGCGGTCAGTGAGGATAATTCCATA ] [+] EMBL CF339115 [GCGGTACTGGCGCTCCATACGGTAGGCGACGTTTGCCATCTCTTTACCGATGGTTGACGGCGTGGCTGGCTGACCGTGGGTACGAGACAGCAGCGGGATATCGCGATACTGAACGGCGAGATCTTTAATGCCATCAATCAGTTGACGCCAGTATGGCAGGATCACTTCATCACGCGCGGTTTTCAGCATTAATGCGTGGGAGAGGTTATTGATATCTTCCGAAGTACAGGCAAAGTGGATGAATTCAGAAACCGCGTGCAGTTCCGGGATCTCCGCCACTTTTTCTTTCAGGAAATACTCAACCGCTTTAACGTCGTGGTTAGTGGTACGCTCGATAGTTTTGATGCGCGCCGCATCTTCTTCGCTGAAACTGGCGACGATTGCATCAAGGTAACCGATTGCGTCGGCAGCAAAAGCAGGAACTTCCTTGATCGCTGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATCGACAGGGGAA ] [+] EMBL CF339301 [GCGGTACTGGCGCTCCATACGGTAGGCGACGTTTGCCATCTCTTTACCGATGGTTGACGGCGTGGCTGGCTGACCGTGGGTACGAGACAGCAGCGGGATATCGCGATACTGAACGGCGAGATCTTTAATGCCATCAATCAGTTGACTCTAGTATGGCAGGATCACTTCATCACGCGCGGTTTTCAGCATTAATGCGTGGGAGAGGTT ] consensusID : consensus_8731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence [CGNNGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGNANACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATCGACAGGGGAAACGGCGNTNNNTGAGGATAATTCNNNNNNTNACNNCTCNNGGGGTNNNNTGNNNANGAATTTGTTTTGCCTGAGTGGNNNNNNGATTANN] [+] EMBL CF196457 [CGNNGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTACACGGAATTTCAGNANACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCCGTAGCGTCCATCGACAGGGGAAACGGCGNTNNNTGAGGATAATTCNNNNNNTNACNNCTCNNGGGGTNNNNTGNNNANGAATTTGTTTTGCCTGAGTGGNNNNNNGATTANN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8731#0 GCGGTACTGGCGCTCCATACGGTAGGCGACGTTTGCCATCTCTTTACCGATGGTTGACGG 60 consensus_8731#1 ------------------------------------------------------------ consensus_8731#0 CGTGGCTGGCTGACCGTGGGTACGAGACAGCAGCGGGATATCGCGATACTGAACGGCGAG 120 consensus_8731#1 ------------------------------------------------------------ consensus_8731#0 ATCTTTAATGCCATCAATCAGTTGACGCCAGTATGGCAGGATCACTTCATCACGCGCGGT 180 consensus_8731#1 ------------------------------------------------------------ consensus_8731#0 TTTCAGCATTAATGCGTGGGAGAGGTTATTGATATCTTCCGAAGTACAGGCAAAGTGGAT 240 consensus_8731#1 ------------------------------------------------------------ consensus_8731#0 GAATTCAGAAACCGCGTGCAGTTCCGGGATCTCCGCCACTTTTTCTTTCAGGAAATACTC 300 consensus_8731#1 ------------------------------------------------------------ consensus_8731#0 AACCGCTTTAACGTCGTGGTTAGTGGTACGCTCGATAGTTTTGATGCGCGCCGCATCTTC 360 consensus_8731#1 ------------------------------------------------------------ consensus_8731#0 TTCGCTGAAACTGGCGACGATTGCATCAAGGTAACCGATTGCGTCGGCAGCAAAAGCAGG 420 consensus_8731#1 ------------------------------------------------------------ consensus_8731#0 AACTTCCTTGATCGCTGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTAC 480 consensus_8731#1 ------------CGNNGCGTGCGCGGCCAGTTTTTGCAGCCAACGTACTTCAACTTGTAC 48 ** ******************************************** consensus_8731#0 ACGGAATTTCAGCAAACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCC 540 consensus_8731#1 ACGGAATTTCAGNANACCATATTCGCTGAAAATCCCGCGCAGCGCGCTGACTTTATCGCC 108 ************ * ********************************************* consensus_8731#0 GTAGCGTCCATCGACAGGGGAAACGGCGGTCAGTGAGGATAATTCCATAGATCACAACTC 600 consensus_8731#1 GTAGCGTCCATCGACAGGGGAAACGGCGNTNNNTGAGGATAATTCNNNNNNTNACNNCTC 168 **************************** * ************ * ** *** consensus_8731#0 CGGGG-TTAAATGAGCAAGAATTTGTTTTGCCTGAGTGGTCAGGCGATTAC- 650 consensus_8731#1 NNGGGGTNNNNTGNNNANGAATTTGTTTTGCCTGAGTGGNNNNNNGATTANN 220 *** * ** * ********************* ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||