These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_874#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence [GGTATTGATGCGCGGCATACTAGTGCTGCACTGGGTCCAGGGCACAACTTGAGCAAGTGGTTGCAGGGCAGATTTTGTGCAACGCTAGCTGACAAGGCTGACAAACAAGTTGTTGCTGGCGTGCTGACCTTGTGGATGCAGGCTGCAAGCTGGCAAAGCACCAAGCTGATGGTTTGGGCCCCTGAAACTGTGGCCGTGCAATGATTGTGCGGTTATGCTGACCCAAAGCTGACAACATCTGCTGCCCTGGTGACGCATTTGCCTGTACCGTGCGGTGGGTGATGCTGGGTGATTGGAATTGTACAGTATAGTAGTACAGGAGAGAAAAATAAAGTCATGCATCATCGTGTGTGACAAGTTGAAACATCGGGGTGATACAAATCTGAATAAAAATGTCATGCAAATTTAAACCAAAAA] [+] EMBL BI802864 [GGTATTGATGCGCGGCATACTAGTGCTGCACTGGGTCCAGGGCACAACTTGAGCAAGTGGTTGCAGGGCAGATTTTGTGCAACGCTAGCTGACAAGGCTGACAAACAAGTTGTTGCTGGCGTGCTGACCTTGTGGATGCAGGCTGCAAGCTGGCAAAGCACCAAGCTGATGGTTTGGGCCCCTGAAACTGTGGCCGTGCAATGATTGTGCGGTTATGCTGACCCAAAGCTGACAACATCTGCTGCCCTGGTGACGCATTTGCCTGTACCGTGCGGTGGGTGATGCTGGGTGATTGGAATTGTACAGTATAGTAGTACAGGAGAGAAAAATAAAGTCATGCATCATCGTGTGTGACAAGTTGAAACATCGGGGTGATACAAATCTGAATAAAAATGTCATGCAAATTTAAACCAAAAA] consensusID : consensus_874#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [CGTCAGGATGATCGCGCAGACAGGTCGTCAGCGTGCCAGGCCATTAGCCAGTGTTTCAGGCGAGTTGTGCAGCAGCGTACAGCTACAACAGGTTTGCTGGCGTTCTGACTTCGATCAGGCTGCAAGCTGCAAGCCCAAGGCTGATGTTGGGCCCTGAAACTGTGCCGTCAATGATGCGGGTGATGCTGACCCAAGCTACAACACTGCTGCCCTGGTGAGCATTGCCTGACCCGTCGGGTGGTATGCTGGTGATTGGAATTGTGAGCAGTGATAGTAGTACAGGAGAGAAAAATAAAGTCATGCATCATCGTGTGTGACAAGTTGAAACATCGGGGTGATACAATCTGAATAAAAATGTCATGCAAATTTAAACATAAAAAAAAAA] [+] EMBL BI802144 [CGTCAGGATGATCGCGCAGACAGGTCGTCAGCGTGCCAGGCCATTAGCCAGTGTTTCAGGCGAGTTGTGCAGCAGCGTACAGCTACAACAGGTTTGCTGGCGTTCTGACTTCGATCAGGCTGCAAGCTGCAAGCCCAAGGCTGATGTTGGGCCCTGAAACTGTGCCGTCAATGATGCGGGTGATGCTGACCCAAGCTACAACACTGCTGCCCTGGTGAGCATTGCCTGACCCGTCGGGTGGTATGCTGGTGATTGGAATTGTGAGCAGTGATAGTAGTACAGGAGAGAAAAATAAAGTCATGCATCATCGTGTGTGACAAGTTGAAACATCGGGGTGATACAATCTGAATAAAAATGTCATGCAAATTTAAACATAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_874#0 GGTATTGATGCGCG-GCATACTAGTGCTGCACTGGGTCCAGGGCACAACTTGAGCAAGTG 59 consensus_874#1 CGTCAGGATGATCGCGCAGACAGGT-CGTCAGCGTG-CCAGGCCA-----TTAGCCAGTG 53 ** **** ** *** ** ** * ** * * ***** ** * *** **** consensus_874#0 GTTGCAGGGCAGATTTTGTGCAACGCTAGCTGACAAGGCTGACAAACAAGTTGTTGCTGG 119 consensus_874#1 -TTTCAGGCGAG---TTGTGCAGC---AGCGTACA--GCTA--CAACAGGTT--TGCTGG 100 ** **** ** ******* * *** *** *** **** *** ****** consensus_874#0 CGTGCTGACCTTGTGGATGCAGGCTGCAAGCTGGCAAAGCACCAAGCTGATGGTTTGGGC 179 consensus_874#1 CGTTCTGACTTCG---AT-CAGGCTGCAAGCTG--CAAGCCCAAGGCTGATG--TTGGGC 152 *** ***** * * ** ************** **** * * ******* ****** consensus_874#0 CCCTGAAACTGTGGCCGTGCAATGATTGTGCGGTTATGCTGACCCAAAGCTGACAACATC 239 consensus_874#1 CC-TGAAACTGTG-CCGT-CAATGAT-GCG-GGTGATGCTGACCCAA-GCT-ACAACA-C 204 ** ********** **** ******* * * *** ************ *** ****** * consensus_874#0 TGCTGCCCTGGTGACGCATTTGCCTGTACCGTGCGGTGGGTGATGCTGGGTGATTGGAAT 299 consensus_874#1 TGCTGCCCTGGTGA-GCATT-GCCTGACCCGTCGGGTGGT--ATGCTGG-TGATTGGAAT 259 ************** ***** ***** **** ***** ******* ********** consensus_874#0 TGTA--CAGT-ATAGTAGTACAGGAGAGAAAAATAAAGTCATGCATCATCGTGTGTGACA 356 consensus_874#1 TGTGAGCAGTGATAGTAGTACAGGAGAGAAAAATAAAGTCATGCATCATCGTGTGTGACA 319 *** **** ************************************************* consensus_874#0 AGTTGAAACATCGGGGTGATACAAATCTGAATAAAAATGTCATGCAAATTTAAACCAAAA 416 consensus_874#1 AGTTGAAACATCGGGGTGATACAA-TCTGAATAAAAATGTCATGCAAATTTAAACATAAA 378 ************************ ****************************** *** consensus_874#0 A------ 417 consensus_874#1 AAAAAAA 385 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||