cluster # 874

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Oryza sativa
cluster # 874 cluster # 874 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_874#0 length = 417 sequences # 1

consensus_874#1 length = 385 sequences # 1

consensusID : consensus_874#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence

                              [GGTATTGATGCGCGGCATACTAGTGCTGCACTGGGTCCAGGGCACAACTTGAGCAAGTGGTTGCAGGGCAGATTTTGTGCAACGCTAGCTGACAAGGCTGACAAACAAGTTGTTGCTGGCGTGCTGACCTTGTGGATGCAGGCTGCAAGCTGGCAAAGCACCAAGCTGATGGTTTGGGCCCCTGAAACTGTGGCCGTGCAATGATTGTGCGGTTATGCTGACCCAAAGCTGACAACATCTGCTGCCCTGGTGACGCATTTGCCTGTACCGTGCGGTGGGTGATGCTGGGTGATTGGAATTGTACAGTATAGTAGTACAGGAGAGAAAAATAAAGTCATGCATCATCGTGTGTGACAAGTTGAAACATCGGGGTGATACAAATCTGAATAAAAATGTCATGCAAATTTAAACCAAAAA]

[+] EMBL BI802864             [GGTATTGATGCGCGGCATACTAGTGCTGCACTGGGTCCAGGGCACAACTTGAGCAAGTGGTTGCAGGGCAGATTTTGTGCAACGCTAGCTGACAAGGCTGACAAACAAGTTGTTGCTGGCGTGCTGACCTTGTGGATGCAGGCTGCAAGCTGGCAAAGCACCAAGCTGATGGTTTGGGCCCCTGAAACTGTGGCCGTGCAATGATTGTGCGGTTATGCTGACCCAAAGCTGACAACATCTGCTGCCCTGGTGACGCATTTGCCTGTACCGTGCGGTGGGTGATGCTGGGTGATTGGAATTGTACAGTATAGTAGTACAGGAGAGAAAAATAAAGTCATGCATCATCGTGTGTGACAAGTTGAAACATCGGGGTGATACAAATCTGAATAAAAATGTCATGCAAATTTAAACCAAAAA]




>consensus_874#0
GGTATTGATGCGCGGCATACTAGTGCTGCACTGGGTCCAGGGCACAACTTGAGCAAGTGG
TTGCAGGGCAGATTTTGTGCAACGCTAGCTGACAAGGCTGACAAACAAGTTGTTGCTGGC
GTGCTGACCTTGTGGATGCAGGCTGCAAGCTGGCAAAGCACCAAGCTGATGGTTTGGGCC
CCTGAAACTGTGGCCGTGCAATGATTGTGCGGTTATGCTGACCCAAAGCTGACAACATCT
GCTGCCCTGGTGACGCATTTGCCTGTACCGTGCGGTGGGTGATGCTGGGTGATTGGAATT
GTACAGTATAGTAGTACAGGAGAGAAAAATAAAGTCATGCATCATCGTGTGTGACAAGTT
GAAACATCGGGGTGATACAAATCTGAATAAAAATGTCATGCAAATTTAAACCAAAAA

consensusID : consensus_874#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [CGTCAGGATGATCGCGCAGACAGGTCGTCAGCGTGCCAGGCCATTAGCCAGTGTTTCAGGCGAGTTGTGCAGCAGCGTACAGCTACAACAGGTTTGCTGGCGTTCTGACTTCGATCAGGCTGCAAGCTGCAAGCCCAAGGCTGATGTTGGGCCCTGAAACTGTGCCGTCAATGATGCGGGTGATGCTGACCCAAGCTACAACACTGCTGCCCTGGTGAGCATTGCCTGACCCGTCGGGTGGTATGCTGGTGATTGGAATTGTGAGCAGTGATAGTAGTACAGGAGAGAAAAATAAAGTCATGCATCATCGTGTGTGACAAGTTGAAACATCGGGGTGATACAATCTGAATAAAAATGTCATGCAAATTTAAACATAAAAAAAAAA]

[+] EMBL BI802144             [CGTCAGGATGATCGCGCAGACAGGTCGTCAGCGTGCCAGGCCATTAGCCAGTGTTTCAGGCGAGTTGTGCAGCAGCGTACAGCTACAACAGGTTTGCTGGCGTTCTGACTTCGATCAGGCTGCAAGCTGCAAGCCCAAGGCTGATGTTGGGCCCTGAAACTGTGCCGTCAATGATGCGGGTGATGCTGACCCAAGCTACAACACTGCTGCCCTGGTGAGCATTGCCTGACCCGTCGGGTGGTATGCTGGTGATTGGAATTGTGAGCAGTGATAGTAGTACAGGAGAGAAAAATAAAGTCATGCATCATCGTGTGTGACAAGTTGAAACATCGGGGTGATACAATCTGAATAAAAATGTCATGCAAATTTAAACATAAAAAAAAAA]




>consensus_874#1
CGTCAGGATGATCGCGCAGACAGGTCGTCAGCGTGCCAGGCCATTAGCCAGTGTTTCAGG
CGAGTTGTGCAGCAGCGTACAGCTACAACAGGTTTGCTGGCGTTCTGACTTCGATCAGGC
TGCAAGCTGCAAGCCCAAGGCTGATGTTGGGCCCTGAAACTGTGCCGTCAATGATGCGGG
TGATGCTGACCCAAGCTACAACACTGCTGCCCTGGTGAGCATTGCCTGACCCGTCGGGTG
GTATGCTGGTGATTGGAATTGTGAGCAGTGATAGTAGTACAGGAGAGAAAAATAAAGTCA
TGCATCATCGTGTGTGACAAGTTGAAACATCGGGGTGATACAATCTGAATAAAAATGTCA
TGCAAATTTAAACATAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_874#0      GGTATTGATGCGCG-GCATACTAGTGCTGCACTGGGTCCAGGGCACAACTTGAGCAAGTG 59
consensus_874#1      CGTCAGGATGATCGCGCAGACAGGT-CGTCAGCGTG-CCAGGCCA-----TTAGCCAGTG 53
                      **   ****  ** *** **  ** *  **  * * ***** **     * *** ****

consensus_874#0      GTTGCAGGGCAGATTTTGTGCAACGCTAGCTGACAAGGCTGACAAACAAGTTGTTGCTGG 119
consensus_874#1      -TTTCAGGCGAG---TTGTGCAGC---AGCGTACA--GCTA--CAACAGGTT--TGCTGG 100
                      ** ****  **   ******* *   ***  ***  ***    **** ***  ******

consensus_874#0      CGTGCTGACCTTGTGGATGCAGGCTGCAAGCTGGCAAAGCACCAAGCTGATGGTTTGGGC 179
consensus_874#1      CGTTCTGACTTCG---AT-CAGGCTGCAAGCTG--CAAGCCCAAGGCTGATG--TTGGGC 152
                     *** ***** * *   ** **************   **** * * *******  ******

consensus_874#0      CCCTGAAACTGTGGCCGTGCAATGATTGTGCGGTTATGCTGACCCAAAGCTGACAACATC 239
consensus_874#1      CC-TGAAACTGTG-CCGT-CAATGAT-GCG-GGTGATGCTGACCCAA-GCT-ACAACA-C 204
                     ** ********** **** ******* * * *** ************ *** ****** *

consensus_874#0      TGCTGCCCTGGTGACGCATTTGCCTGTACCGTGCGGTGGGTGATGCTGGGTGATTGGAAT 299
consensus_874#1      TGCTGCCCTGGTGA-GCATT-GCCTGACCCGTCGGGTGGT--ATGCTGG-TGATTGGAAT 259
                     ************** ***** *****  ****  *****   ******* **********

consensus_874#0      TGTA--CAGT-ATAGTAGTACAGGAGAGAAAAATAAAGTCATGCATCATCGTGTGTGACA 356
consensus_874#1      TGTGAGCAGTGATAGTAGTACAGGAGAGAAAAATAAAGTCATGCATCATCGTGTGTGACA 319
                     ***   **** *************************************************

consensus_874#0      AGTTGAAACATCGGGGTGATACAAATCTGAATAAAAATGTCATGCAAATTTAAACCAAAA 416
consensus_874#1      AGTTGAAACATCGGGGTGATACAA-TCTGAATAAAAATGTCATGCAAATTTAAACATAAA 378
                     ************************ ******************************  ***

consensus_874#0      A------ 417
consensus_874#1      AAAAAAA 385
                     *