These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8746#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 880 fasta sequence [CGAGGAGGAGGAGGAAGGAATCATCAAGGCAACCGATCAAATCGTCGATCGATTTTCCATGGCGCGGCCGGGGCACGGAGGCGTTCCCGGACCTGGGGGCGCAGTGCGACAGGGAGGACTGCAACCAGCTCGACTTCCTCCCCTTCGACTGCGACGGCTGCGGCAAGACGTTCTGCGCGGAGCACCGGACGTACCGGGACCACGGCTGCGCGGCGCGCCGCGGACCAGGGCCGCACCGTCTTCTTCTGCAAGGCCTGCGGCGACGCCATCTAGCGGCGGGCCGGGGACGGGGGCGGGGACGACGCCGCCGTGCTGGAGGCGCACGCGCGGTCGCGGCGGTGCGACCCGGCGAGGAAGCGCAAGCCGCGGTGCCCCGTGCCGCGGTGCAAGGAGACGCTCACGTTCTCCAACACGAGCGGGTGCAAGGGGTGCGGCCAGAAGGTGTGCCTCAAGCACCGGTTCCCCGCCGACCACGCGTGCGCCGGCGCAGGCGCCGGCGCGGCGTCGAAGGCCGCCGGCGCCGCGGCCGCCGCGAGGAGCGCCGGGCAGTGCGGGCGCGACGCGCAG-AAGAAGGAGGGCGGCGGGTGGAAGCTGCCGCAATCGGTGAGGAACATGAAGATTTTCTGACTTGTCACGCCACGGTCGCCGGCGCACGCGGCGCGCCGCGGTTTCTTTCGTAGGAGGACAAGCAAAGAAAGTGCCAAAGAGCTTGCCGAGGAGGCATTTGATCTGTCCAATGATTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTTTTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAACAGGGGAAATGGTTTTAGTACCTTTTTCAAACAGGTATTCAAATTAAGAGCTATTAAA] [+] EMBL AK065210 [CGAGGAGGAGGAGGAAGGAATCATCAAGGCAACCGATCAAATCGTCGATCGATTTTCCATGGCGCGGCCGGGGCACGGAGGCGTTCCCGGACCTGGGGGCGCAGTGCGACAGGGAGGACTGCAACCAGCTCGACTTCCTCCCCTTCGACTGCGACGGCTGCGGCAAGACGTTCTGCGCGGAGCACCGGACGTACCGGGACCACGGCTGCGCGGCGCGCCGCGGACCAGGGCCGCACCGTCTTCTTCTGCAAGGCCTGCGGCGACGCCATCTAGCGGCGGGCCGGGGACGGGGGCGGGGACGACGCCGCCGTGCTGGAGGCGCACGCGCGGTCGCGGCGGTGCGACCCGGCGAGGAAGCGCAAGCCGCGGTGCCCCGTGCCGCGGTGCAAGGAGACGCTCACGTTCTCCAACACGAGCGGGTGCAAGGGGTGCGGCCAGAAGGTGTGCCTCAAGCACCGGTTCCCCGCCGACCACGCGTGCGCCGGCGCAGGCGCCGGCGCGGCGTCGAAGGCCGCCGGCGCCGCGGCCGCCGCGAGGAGCGCCGGGCAGTGCGGGCGCGACGCGCAG AAGAAGGAGGGCGGCGGGTGGAAGCTGCCGCAATCGGTGAGGAACATGAAGATTTTCTGACTTGTCACGCCACGGTCGCCGGCGCACGCGGCGCGCCGCGGTTTCTTTCGTAGGAGGACAAGCAAAGAAAGTGCCAAAGAGCTTGCCGAGGAGGCAT ] [+] EMBL AU161865 [ CGCCGGGCAGTGCGGGCGCGACGC CAGNAAGAAGGAGGGCGGCGGGTGGAAGCTGCCGCAATCGGTGAGGAACATGAAGATTTTCTGACTTGTCACGCCACGGTCGCCGGCGCACGCGGCGCGCCGCGGTTTCTTTCGTAGGAGGACAAGCAAAGAAAGTGCCAAAGAGCTTGCCGAGGAGGCATTTGATCTGTCCAATGATTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTTTTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAACAGGGGAAATGGTTTTAGTACCTTTTTCAAACAGGTATTCAAATTAAGAGCTATTAAA] [+] EMBL AU102058 [ CGCCGGGCAGTGCGGG GCGACGCGCAG AAGAAGGAGGGCGGCGGGTGGAA CTGCCGCAATCGGTGAGGAACATGAAGATTTTCTGACTTGTCACGCCACGGTCGCCGGCGCAC CGGCGCGCCGCGGTTTCTTTCGTAGGAGGACAAGCAAAGAAAGTGCCAAAGAGCTTGCCGAGGAGGCATTTGATCTGTCCAATGATTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTTTTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAACAGGGGAAATGGTTTTAGTACCTTTTTCAAACAGGTATTCAAATTAAGAGCTATTAAA] consensusID : consensus_8746#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 202 fasta sequence [AGAGGCGAGACAAGGGGCTTGCCGAGGAGGCATTTGATCTGTCCAATGATTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTTTTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAACAGGGGAAATGGTTTTAGTACCTTTTTCAAACATGTATTCAAATTAAGAGCTATTAAAAAAAAAAAAAAAA] [-] EMBL CA761793 [AGAGGCGAGACAAGGGGCTTGCCGAGGAGGCATTTGATCTGTCCAATGATTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTTTTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAACAGGGGAAATGGTTTTAGTACCTTTTTCAAACATGTATTCAAATTAAGAGCTATTAAAAAAAAAAAAAAAA] consensusID : consensus_8746#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 123 fasta sequence [TCTGTCCAATGATTTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTTTTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB096400 [TCTGTCCAATGATTTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTTTTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8746#0 CGAGGAGGAGGAGGAAGGAATCATCAAGGCAACCGATCAAATCGTCGATCGATTTTCCAT 60 consensus_8746#1 ------------------------------------------------------------ consensus_8746#2 ------------------------------------------------------------ consensus_8746#0 GGCGCGGCCGGGGCACGGAGGCGTTCCCGGACCTGGGGGCGCAGTGCGACAGGGAGGACT 120 consensus_8746#1 ------------------------------------------------------------ consensus_8746#2 ------------------------------------------------------------ consensus_8746#0 GCAACCAGCTCGACTTCCTCCCCTTCGACTGCGACGGCTGCGGCAAGACGTTCTGCGCGG 180 consensus_8746#1 ------------------------------------------------------------ consensus_8746#2 ------------------------------------------------------------ consensus_8746#0 AGCACCGGACGTACCGGGACCACGGCTGCGCGGCGCGCCGCGGACCAGGGCCGCACCGTC 240 consensus_8746#1 ------------------------------------------------------------ consensus_8746#2 ------------------------------------------------------------ consensus_8746#0 TTCTTCTGCAAGGCCTGCGGCGACGCCATCTAGCGGCGGGCCGGGGACGGGGGCGGGGAC 300 consensus_8746#1 ------------------------------------------------------------ consensus_8746#2 ------------------------------------------------------------ consensus_8746#0 GACGCCGCCGTGCTGGAGGCGCACGCGCGGTCGCGGCGGTGCGACCCGGCGAGGAAGCGC 360 consensus_8746#1 ------------------------------------------------------------ consensus_8746#2 ------------------------------------------------------------ consensus_8746#0 AAGCCGCGGTGCCCCGTGCCGCGGTGCAAGGAGACGCTCACGTTCTCCAACACGAGCGGG 420 consensus_8746#1 ------------------------------------------------------------ consensus_8746#2 ------------------------------------------------------------ consensus_8746#0 TGCAAGGGGTGCGGCCAGAAGGTGTGCCTCAAGCACCGGTTCCCCGCCGACCACGCGTGC 480 consensus_8746#1 ------------------------------------------------------------ consensus_8746#2 ------------------------------------------------------------ consensus_8746#0 GCCGGCGCAGGCGCCGGCGCGGCGTCGAAGGCCGCCGGCGCCGCGGCCGCCGCGAGGAGC 540 consensus_8746#1 ------------------------------------------------------------ consensus_8746#2 ------------------------------------------------------------ consensus_8746#0 GCCGGGCAGTGCGGGCGCGACGCGCAGAAGAAGGAGGGCGGCGGGTGGAAGCTGCCGCAA 600 consensus_8746#1 ------------------------------------------------------------ consensus_8746#2 ------------------------------------------------------------ consensus_8746#0 TCGGTGAGGAACATGAAGATTTTCTGACTTGTCACGCCACGGTCGCCGGCGCACGCGGCG 660 consensus_8746#1 ------------------------------------------------------------ consensus_8746#2 ------------------------------------------------------------ consensus_8746#0 CGCCGCGGTTTCTTTCGTAGGAGGACAAGCAAAGAAAGTGCCAAAGAGCTTGCCGAGGAG 720 consensus_8746#1 -------------------------------AGAGGCGAGACAAGGGGCTTGCCGAGGAG 29 consensus_8746#2 ------------------------------------------------------------ consensus_8746#0 GCATTTGATCTGTCCAATGATTTTTTTT-ATTTGATGTAATTATCAATTGGTGATGTCTT 779 consensus_8746#1 GCATTTGATCTGTCCAATGATTTTTTTT-ATTTGATGTAATTATCAATTGGTGATGTCTT 88 consensus_8746#2 --------TCTGTCCAATGATTTTTTTTTATTTGATGTAATTATCAATTGGTGATGTCTT 52 ******************** ******************************* consensus_8746#0 TTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAACAGGGGAAATGGTTTTA 839 consensus_8746#1 TTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAACAGGGGAAATGGTTTTA 148 consensus_8746#2 TTTCGAATGAATTCTGCTGATAAAAGCAAAGAGCTATTCTTAAAAAAAAAAAAAAAAAAA 112 ******************************************* * *** * consensus_8746#0 GTACCTTTTTCAAACAGGTATTCAAATTAAGAGCTATTAAA------------- 880 consensus_8746#1 GTACCTTTTTCAAACATGTATTCAAATTAAGAGCTATTAAAAAAAAAAAAAAAA 202 consensus_8746#2 AAAA-------AAAAAAA------------------------------------ 123 * *** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||