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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8750#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1602 fasta sequence
[ACAAAAACCCCAGAATTTTTCCGATGATTCCTTCGGATTCGCGTTTCGGGGCTGACGAAACCCAATCCACCACCCAAAAAAGTAGCGAGTCTCCGATCGAATTCGCCACCCAGTATCTCAATTTCGTTCGTGCGAGGCATCCGTGTTCGATTTGCGAAGGTGAATTTTGATCGGTTTGGTTTGGATTTTTGG-TTTTTTTTTTCTCCATCAGATGGATGGATTGGCGCCGGCGGCGA-TGTCGGAGGCGCTGCTGGTCTTCGCGAGCGGGAGATCCATCGGCGGCGCCGGTCCAGGACGACGACCTCATCTTCGCCGCGGCGAGAGCCG-GGAGTTCGCGTGGATCTACGACTACGAGGATGCGCCGATGAGTGCGCCGGTGTGGTGAGAGGGGTTTGGGCAGCTCCAATCTCGAGTCGAGGCGCCCGCTGATGGGGACGAGGAGGTCAATGGGGATCGAGCGTGGCCTCGCGGCTCGCGCCGTCCATCCCCAATGGGAAGAAGGGTGGTGGTATGAAGATTCTAGGGCGAGGAAGGACGATTCCGATCAGGGATATCGAGGAAGAGTAGGATGTAGAAGGCGAGGGAAGCCGAAACCTCTCTCAAGCTAGAAGGATGATTGGCTCTCCTCAGTGTTTCATAGATCATACATATAATACTTGTCGGCTCAGGGGGAAAACATAAGTTATCTGCACAGTTTGGATTGAATTTTGGAATGAAGATAACCAAGGTCTCTTGCCAGTTTGCTCCTGCAGTGTCCCGTACTCCAGTGTGGCCACTTGCCTGCCAGTGGCGATGAAGAGGAAACAGTGTTAAGGCATGCAGTGCAGCAACAAGCTCGGCCGGTTTAAGAGTGATGACAAGCACGCGGTCCCTGCTGCGGTTTGTGCCCAGAATGGGACTGTGAGCATGGCCGGGACAGATAGTTTTGTTGGATTGGATGCACACTGCCGGCCGGCCTGCACCATCGCCGTCCCGTGTGTCACGGGCACTCGTACGTCGCCGGCCGTCGCCGTCACTGGCCCACCCGTCAGCGGCACACGGTGGGGTTGTTCTTGTTACAGTGGGAAGCTGGAAGAGTGTTGGCAAGAGAACAGTGAGGCTGGTTGTTGCTGGCTATGATGTTAACCTGACCTATTGCTACTGCTCCTGCTGCACACTGTGGCTCTCCAGTGACTCTCCAGTGAGCCCATCTCAACCTATCCGGTTTGTGCATGCGGTGCCATGGCCATTCTGGAGCTGAGTCCCAGGTTAAAGTGGTGTACCCATCCAATGTTGCTGCTGCTGTTCTTGATGTGCCTGTCCTGAAACATCACAAGTGAAGTCCAGTCAAGTTCTGTTCAGTGTCCCCCTATCTTCACGAGACGAGCTGGCGTTGCATTGCGAGAAGAGAGATGACAAACGGTGTGGCTCAAACTGGGAGCTCATCCCAAGCAAAAGCTCCATCTCAACCGATGGAAGCAGGCAAAGCATTTTAGCTCCTACTACTTCATTGTATCACGGTGAGGATTTTGGTTTTGTTTTGCATGATACAAAAGATTGCTGTTCATCGTTGCAGCAGTTGGGGGTAAGGTAGTAACTCCCCCGTCCCATAATATAACATTT]
[+] EMBL AK106259 [ACAAAAACCCCAGAATTTTTCCGATGATTCCTTCGGATTCGCGTTTCGGGGCTGACGAAACCCAATCCACCACCCAAAAAAGTAGCGAGTCTCCGATCGAATTCGCCACCCAGTATCTCAATTTCGTTCGTGCGAGGCATCCGTGTTCGATTTGCGAAGGTGAATTTTGATCGGTTTGGTTTGGATTTTTGGTTTTTTTTTTTCTCCATCAGATGGATGGATTGGCGCCGGCGGCGA TGTCGGAGGCGCTGCTGGTCTTCGCGAGCGGGAGATCCATCGGCGGCGCCGGTCCAGGACGACGACCTCATCTTCGCCGCGGCGAGAGCCG GGAGTTCGCGTGGATCTACGACTACGAGGATGCGCCGATGAGTGCGCCGGTGTGGTGAGAGGGGTTTGGGCAGCTCCAATCTCGAGTCGAGGCGCCCGCTGATGGGGACGAGGAGGTCAATGGGGATCGAGCGTGGCCTCGCGGCTCGCGCCGTCCATCCCCAATGGGAAGAAGGGTGGTGGTATGAAGATTCTAGGGCGAGGAAGGACGATTCCGATCAGGGATATCGAGGAAGAGTAGGATGTAGAAGGCGAGGGAAGCCGAAACCTCTCTCAAGCTAGAAGGATGATTGGCTCTCCTCAGTGTTTCATAGATCATACATATAATACTTGTCGGCTCAGGGGGAAAACATAAGTTATCTGCACAGTTTGGATTGAATTTTGGAATGAAGATAACCAAGGTCTCTTGCCAGTTTGCTCCTGCAGTGTCCCGTACTCCAGTGTGGCCACTTGCCTGCCAGTGGCGATGAAGAGGAAACAGTGTTAAGGCATGCAGTGCAGCAACAAGCTCGGCCGGTTTAAGAGTGATGACAAGCACGCGGTCCCTGCTGCGGTTTGTGCCCAGAATGGGACTGTGAGCATGGCCGGGACAGATAGTTTTGTTGGATTGGATGCACACTGCCGGCCGGCCTGCACCATCGCCGTCCCGTGTGTCACGGGCACTCGTACGTCGCCGGCCGTCGCCGTCACTGGCCCACCCGTCAGCGGCACACGGTGGGGTTGTTCTTGTTACAGTGGGAAGCTGGAAGAGTGTTGGCAAGAGAACAGTGAGGCTGGTTGTTGCTGGCTATGATGTTAACCTGACCTATTGCTACTGCTCCTGCTGCACACTGTGGCTCTCCAGTGACTCTCCAGTGAGCCCATCTCAACCTATCCGGTTTGTGCATGCGGTGCCATGGCCATTCTGGAGCTGAGTCCCAGGTTAAAGTGGTGTACCCATCCAATGTTGCTGCTGCTGTTCTTGATGTGCCTGTCCTGAAACATCACAAGTGAAGTCCAGTCAAGTTCTGTTCAGTGTCCCCCTATCTTCACGAGACGAGCTGGCGTTGCATTGCGAGAAGAGAGATGACAAACGGTGTGGCTCAAACTGGGAGCTCATCCCAAGCAAAAGCTCCATCTCAACCGATGGAAGCAGGCAAAGCATTTTAGCTCCTACTACTTCATTGTATCACGGTGAGGATTTTGGTTTTGTTTTGCATGATACAAAAGATTGCTGTTCATCGTTGCAGCAGTTGGGGGTAAGGTAGTAACTCCCCCGTCCCATAATATAACATTT]
[+] EMBL C71677 [ GAATTTTNCCAATGATTCCTTCGGATTCGCGTTTCGGGGCTGACGAAACCCAATCCACCACCCAAAAAAGTAGCGAGTCTCCGATCGANTTCGCCACCCAGTATCTCAATTTCNTTCGTGCGAGGCATCCGTNTTCGATTTGCGAAGGTGAATTTTNATCGGTTTGGTTTGGATTTTTGG TTTTTTTTTTCTCCATCAGATGGATGGATTGGNGCCGGCGG GATTGTCGGAGGCGCTGCTGGTCTTCGCNAGCGGNAGATCCATCGGCGGCGCCGGTCCAGGACGACGACCTCATCTTCGNCGCGGCGAGAGCCGNGAAGTTCGCNTGGTTCTACGACT ]
[+] EMBL CF337444 [ CCGATGATTCCTTCGGATTCGCGTTTCGGGGCTGACGAAACCCAATCCACCACCCAAAAAAGTAGCGAGTCTCCGATCGAATTCGCCACCCAGTATCTCAATTTCGTTCGTGCGAGGCATCCG GTTCGATTTGCGAAGGTGAATTTTGATCGG TTGGTTT GATTTTTGG TTTTTTTTTTCTCCATCAGATGGATGGATTGGCGCCGGCGGCGA TGTCGGAGGCGCTGCTGGTCTTCGCGAGCGGGAGATCCATCGGCGGCGCCGGTCCAGGACGACGACCTCATCTTCGCCGCGGCGAGAGCCG GGAGTTCGCGTGGATCTACGACTACGAGGATGCGCCGATGAt ]
consensusID : consensus_8750#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1119 fasta sequence
[ACAAAAACCCCAGAATTTTTCCGATGATTCCTTCGTATTCGCGTTTCGGGGCTGACGAAACCCAATCCACCACCCAAAAAAGTAGCGAGTCTCCGATCGAATTCGCCACCCAGTATCTCAATTTCGTTCGTGCGAGGCATCCGTGTTCGATTTGCGAAGGTGAATTTTGATCGGTTTGGTTTGGATTTTTGGTTTTTTTTTTCTCCATCAGATGGATGGATTGGCGCCGGCGGCGATGTCGGAGGCGCTGCTGGTCTTCGCGAGCGGGAGATCCATCGGCGGCGCCGGTCCAGGACGACGACCTCATCTTCGCCGCGGCGAGAGCCGGGAGTTCGCGTGGATCTACGACTACGAGGATGCGCCGATGAGTGCGCCGGTGTGGTGAGAGGGGTTTGGGCAGCTCCAATCTCGAGTCGAGGCGCCCGCTGATGGGGACGAGGAGGTCAATGGGGATCGAGCGTGGCCTCGCGGCTCGCGCCGTCCATCCCCAATGGGAAGAAGGGTGGTGGTATGAAGATTCTAGGGCGAGGAAGGACGATTCCGATCAGGGGGCGCTACCTGTGTAATGTTAAAATGGTGGCTTGGAGGGGCAGGACAATGCTCAGGGATTTCTCCAAGGTGAGGGTGCAGGAGACTGAAGAAAAACAGGGTTTGGGAATTGGTTATTGGGTTGATGCACTGCAACAGAAGCTGCATTTCTCGATTCCGCTGGTGAGGGAAGGGGATGGGTCGATAGAGGTTGTTGCAGACAACAATGGATGGAGCTTCATGGGTGAGGATGTGGTTGCGCGATCAGGGATATCGAGGAAGAGTAGGATGTAGAAGGCGAGGGAAGCCGAAACCTCTCTCAAGCTAGAAGGATGATTGGCTCTCCTCAGTGTTTCATAGGTAACATTTTACAGTTCGTTCCATGTAAACCTTATACCTTAAATAGGGCTAATAGTTTACAATCAATTTAGTAGGTTTAATGATGATCTTTACACACTTCTGTATAAGCAACAAAAGTATTAGATTATAGCATACCATGTTCCTTGTGTACTTATTATTGATTTAACTTCAGAGCCTATGAATTTAACTTGTAAGCAAGATAAGTCACTTTTCCAATCTGTACACTTGTTG]
[+] EMBL AK106659 [ACAAAAACCCCAGAATTTTTCCGATGATTCCTTCGTATTCGCGTTTCGGGGCTGACGAAACCCAATCCACCACCCAAAAAAGTAGCGAGTCTCCGATCGAATTCGCCACCCAGTATCTCAATTTCGTTCGTGCGAGGCATCCGTGTTCGATTTGCGAAGGTGAATTTTGATCGGTTTGGTTTGGATTTTTGGTTTTTTTTTTCTCCATCAGATGGATGGATTGGCGCCGGCGGCGATGTCGGAGGCGCTGCTGGTCTTCGCGAGCGGGAGATCCATCGGCGGCGCCGGTCCAGGACGACGACCTCATCTTCGCCGCGGCGAGAGCCGGGAGTTCGCGTGGATCTACGACTACGAGGATGCGCCGATGAGTGCGCCGGTGTGGTGAGAGGGGTTTGGGCAGCTCCAATCTCGAGTCGAGGCGCCCGCTGATGGGGACGAGGAGGTCAATGGGGATCGAGCGTGGCCTCGCGGCTCGCGCCGTCCATCCCCAATGGGAAGAAGGGTGGTGGTATGAAGATTCTAGGGCGAGGAAGGACGATTCCGATCAGGGGGCGCTACCTGTGTAATGTTAAAATGGTGGCTTGGAGGGGCAGGACAATGCTCAGGGATTTCTCCAAGGTGAGGGTGCAGGAGACTGAAGAAAAACAGGGTTTGGGAATTGGTTATTGGGTTGATGCACTGCAACAGAAGCTGCATTTCTCGATTCCGCTGGTGAGGGAAGGGGATGGGTCGATAGAGGTTGTTGCAGACAACAATGGATGGAGCTTCATGGGTGAGGATGTGGTTGCGCGATCAGGGATATCGAGGAAGAGTAGGATGTAGAAGGCGAGGGAAGCCGAAACCTCTCTCAAGCTAGAAGGATGATTGGCTCTCCTCAGTGTTTCATAGGTAACATTTTACAGTTCGTTCCATGTAAACCTTATACCTTAAATAGGGCTAATAGTTTACAATCAATTTAGTAGGTTTAATGATGATCTTTACACACTTCTGTATAAGCAACAAAAGTATTAGATTATAGCATACCATGTTCCTTGTGTACTTATTATTGATTTAACTTCAGAGCCTATGAATTTAACTTGTAAGCAAGATAAGTCACTTTTCCAATCTGTACACTTGTTG]
[-] EMBL CF317983 [ GGATGCGCCGATGAGTGCGCCGGTGTGGTGAGAGGGGTTTGGGCAGCTCCAATCTCGAGTCGAGGCGCCCGCTGATGGGGACGAGGAGGTCAATGGGGATCGAGCGTGGCCTCGCGGCTCGCGCCGTCCATCCCCAATGGGAAGAAGGGTGGTGGTATGAAGATTCTAGGGCGAGGAAGGACGATTCCGATCAGGGGGCGCTACCTGTGTAATGTTAAAATGGTGGCTTGGAGGGGCAGGACAATGCTCAGGGATTTCTCCAAGGTGAGGGTGCAGGAGACTGAAGAAAAACAGGGTTTGGGAATTGGTTATCGGGTTGATGCACTGCAACAGAAGCTGCATTTCTCGATTCCGCTGGTGAGGGAAGGGGATGGGTCGATAGAGGTTGTTGCAGACAACAATGGATGGAGCTTCATGGGTGAGGATGTGGTTGCGCGATCAGGGATATCGAGGAAGAGTAGGATGTAGAAGGCGAGGGAAGCCGAAACCTCTCTCAAGCTAGAAGGATGATTGGCTCTCCTCAGTGTTTCATAGGTAACATTTTACAGTTCGTTCCATGTAAACCTTATACCTTAAATAGGGCTAATAGTTTACAATCAAaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8750#0 ACAAAAACCCCAGAATTTTTCCGATGATTCCTTCGGATTCGCGTTTCGGGGCTGACGAAA 60
consensus_8750#1 ACAAAAACCCCAGAATTTTTCCGATGATTCCTTCGTATTCGCGTTTCGGGGCTGACGAAA 60
*********************************** ************************
consensus_8750#0 CCCAATCCACCACCCAAAAAAGTAGCGAGTCTCCGATCGAATTCGCCACCCAGTATCTCA 120
consensus_8750#1 CCCAATCCACCACCCAAAAAAGTAGCGAGTCTCCGATCGAATTCGCCACCCAGTATCTCA 120
************************************************************
consensus_8750#0 ATTTCGTTCGTGCGAGGCATCCGTGTTCGATTTGCGAAGGTGAATTTTGATCGGTTTGGT 180
consensus_8750#1 ATTTCGTTCGTGCGAGGCATCCGTGTTCGATTTGCGAAGGTGAATTTTGATCGGTTTGGT 180
************************************************************
consensus_8750#0 TTGGATTTTTGGTTTTTTTTTTCTCCATCAGATGGATGGATTGGCGCCGGCGGCGATGTC 240
consensus_8750#1 TTGGATTTTTGGTTTTTTTTTTCTCCATCAGATGGATGGATTGGCGCCGGCGGCGATGTC 240
************************************************************
consensus_8750#0 GGAGGCGCTGCTGGTCTTCGCGAGCGGGAGATCCATCGGCGGCGCCGGTCCAGGACGACG 300
consensus_8750#1 GGAGGCGCTGCTGGTCTTCGCGAGCGGGAGATCCATCGGCGGCGCCGGTCCAGGACGACG 300
************************************************************
consensus_8750#0 ACCTCATCTTCGCCGCGGCGAGAGCCGGGAGTTCGCGTGGATCTACGACTACGAGGATGC 360
consensus_8750#1 ACCTCATCTTCGCCGCGGCGAGAGCCGGGAGTTCGCGTGGATCTACGACTACGAGGATGC 360
************************************************************
consensus_8750#0 GCCGATGAGTGCGCCGGTGTGGTGAGAGGGGTTTGGGCAGCTCCAATCTCGAGTCGAGGC 420
consensus_8750#1 GCCGATGAGTGCGCCGGTGTGGTGAGAGGGGTTTGGGCAGCTCCAATCTCGAGTCGAGGC 420
************************************************************
consensus_8750#0 GCCCGCTGATGGGGACGAGGAGGTCAATGGGGATCGAGCGTGGCCTCGCGGCTCGCGCCG 480
consensus_8750#1 GCCCGCTGATGGGGACGAGGAGGTCAATGGGGATCGAGCGTGGCCTCGCGGCTCGCGCCG 480
************************************************************
consensus_8750#0 TCCATCCCCAATGGGAAGAAGGGTGGTGGTATGAAGATTCTAGGGCGAGGAAGGACGATT 540
consensus_8750#1 TCCATCCCCAATGGGAAGAAGGGTGGTGGTATGAAGATTCTAGGGCGAGGAAGGACGATT 540
************************************************************
consensus_8750#0 CCGATCAGGGATATCGAGGAAGAGTAGGATGTAGAAGGCGAGGGAAGCCGAAACCTCTCT 600
consensus_8750#1 CCGATCAGGG------------------------------------GGCGCTACCTGTGT 564
********** * ** **** * *
consensus_8750#0 CAAGCTAGAAGGATGATTGGCTCTCCTCAGTGTTTCATAGATCATACATATAATACTTGT 660
consensus_8750#1 AATGTTAAAATGGTG----------------GCTTGGAGGGGCA---GGACAAT------ 599
* * ** ** * ** * ** * ** * ***
consensus_8750#0 CGGCTCAGGGGGAAAACATAAGTTATCTGCACAGTTTGGATTGAATTTTGGAATGAAGAT 720
consensus_8750#1 --GCTCAGGGA------------TTTCTCCAAGGTGAGGGTGCAGG---AGACTGAAGAA 642
******** * *** ** ** ** * * ** ******
consensus_8750#0 AACCAAGGTCTCTTGCCAGTTTGCTCCTGCAGTGTCCCGTACTCCAGTGTGGCCACTTGC 780
consensus_8750#1 AAACAGGGTTTGGGAATTGGTTATTGGGTTGATGCACTGCAACAGAAGCTGCATTTCTCG 702
** ** *** * * ** * ** * * * * ** *
consensus_8750#0 CTGCCAGTGGCGATGAAGAGGAAACAGT-GTTAAGGCATGCAGTGCAGCAACAAGCTCGG 839
consensus_8750#1 ATTCCGCTGGTGAGGGAAGGGGATGGGTCGATAGAGGTTGTTGCAGA-CAACAATGGATG 761
* ** *** ** * * ** * ** * ** * ** * * ****** *
consensus_8750#0 CCGGTTTAAGAGTGATGACAAGCACGCGGTCCCTGCTGCGGTTTGTGCCCAGAATGGGAC 899
consensus_8750#1 GAGCTTCATGGGTGAGGATGTGGTTGCG---CGATCAGGGATATCGAGGAAGAGTAGGAT 818
* ** * * **** ** * *** * * * * * * *** * ***
consensus_8750#0 TGTGAGCATGGCCGGGACAGATAGTTTTGTTGGATTGGATGCACACTGCCGGCCGGCCTG 959
consensus_8750#1 GTAGAAGGCGAGGGAAGCCGAAACCTCTCTCAAGCTAGAAGGAT------GATTGGCTC- 871
** * * * ** * * * * * ** * * * ***
consensus_8750#0 CACCATCGCCGTCCCGTGTGTCACGGGCACTCGTACGTCGCCGGCCGTCGCCGTCACTGG 1019
consensus_8750#1 --TCCTCAGTGTTTCATAGGTAACATTTTACAGTTCGTTCCATGTAAACCTTATACCTTA 929
* ** ** * * ** ** ** *** * * * * **
consensus_8750#0 CCCACCCGTCAGCGGCACACGGTGGGGTTGTTCTTGTTACAGTGGGAAGCTGGAAGAGTG 1079
consensus_8750#1 AATAGG-GCTAATAGTTTACAATCAATTTAGTA--GGTTTAATGATGATCTTTACACACT 986
* * * * ** * ** * * * * ** * ** *
consensus_8750#0 TTGGCAAGAG-AACAGTGAGGCTGG-TTGTTGCTGGCTATGATGTTAACCTGACCTATTG 1137
consensus_8750#1 TCTGTATAAGCAACAAAAGTATTAGATTATAGCATACCATGTTCCTTGTGT-ACTTATTA 1045
* * * ** **** * * ** * ** * *** * * * ** ****
consensus_8750#0 CTACTGCTCCTGCTGCACACTGTGGCTCTCCAGTGACTCTCCAGTGAGCCCATCTCAACC 1197
consensus_8750#1 TTGATTTAACTTCAGAGC-CTATGAATTT-----AACTTGTAAGCAAGATAAGTC--ACT 1097
* * ** * * * ** ** * * *** ** ** * **
consensus_8750#0 TATCCGGTTTGTGCATGCGGTGCCATGGCCATTCTGGAGCTGAGTCCCAGGTTAAAGTGG 1257
consensus_8750#1 TTTCCAATCTGTACACTTGTTG-------------------------------------- 1119
* *** * *** ** * **
consensus_8750#0 TGTACCCATCCAATGTTGCTGCTGCTGTTCTTGATGTGCCTGTCCTGAAACATCACAAGT 1317
consensus_8750#1 ------------------------------------------------------------
consensus_8750#0 GAAGTCCAGTCAAGTTCTGTTCAGTGTCCCCCTATCTTCACGAGACGAGCTGGCGTTGCA 1377
consensus_8750#1 ------------------------------------------------------------
consensus_8750#0 TTGCGAGAAGAGAGATGACAAACGGTGTGGCTCAAACTGGGAGCTCATCCCAAGCAAAAG 1437
consensus_8750#1 ------------------------------------------------------------
consensus_8750#0 CTCCATCTCAACCGATGGAAGCAGGCAAAGCATTTTAGCTCCTACTACTTCATTGTATCA 1497
consensus_8750#1 ------------------------------------------------------------
consensus_8750#0 CGGTGAGGATTTTGGTTTTGTTTTGCATGATACAAAAGATTGCTGTTCATCGTTGCAGCA 1557
consensus_8750#1 ------------------------------------------------------------
consensus_8750#0 GTTGGGGGTAAGGTAGTAACTCCCCCGTCCCATAATATAACATTT 1602
consensus_8750#1 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||