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     These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs : 
 consensusID : consensus_8755#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1570 fasta sequence 
                              [TTTTTTAATCACGTCGGGAATTCAGCCTTATAATCACGTCGGGAATTCGAGCACAAAACTAGTATGAACATATCAGATATTCAAGTTTGCTTGTTTGTAGCATAGGATATAGTTTGAGCAAAACAAAGAAAGAAGTGCAATGTTCAGCGGTTGAGTTTTCC-TTTGGCAACGAAACACAAGATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAGTCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGC-ACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCA-CCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAGCCGCGGGCAACCCCTCGTCTGCACGCGCCGGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGACCCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCACCGTCCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACTCCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGGCCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCAGGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCGTGCGTCGGCGACGATCTCCTCGACGTCGGAGGAGTAGATGGTCATCTCCCTGATGCTCTCCTGCACGCCGCCGAACTCCGCCGCGTGCTGCGCGGACAGCAGCGGCAGGGACCGCGTGCCGTCCTGCAGCTTGCGGAGGTGGAGCGACCGGGCGCGCACGCCAGGTGCCAGCCTCGCGAGCCTCGCCACGTCCCTGGTGCTGTCCAGCCACAGGCCCAGCGCCGTCAGCTGCGCGCCGCTGCTCTCAAGATCATCAATTACCGGCGCGATGTAGTCGTCCGCGATGGAGACGATGCTCGCGGTGAACAGTTCGAGCACCTGCAGCTTCCCGAGCCGTGAGATCAGCCCGGCCGGTATGGTGATCTGGATGTAGTAGTTGTCGCGCAGGTAGAGGTACTTGAGCTGGCTCAGGTTGCTCAGCTCCATCGGCAGCGACAGGATCCTGTTCTTGGAGAGGTTGAGGTACTCCAGGTTGACCAAGCAGCAGATCTCCATCGGGAACGCGTCGACGATGCCGGTCTCCTCCATGTCAAGGTAGGTCAGCCTTGTGAAGTGCTGGATCGCCTGGATCATCCTCTTCGGCAGGGCACGGTTGCACTGGAGCATCAGCGTCTCCGGCTGCGCGTCCGCGAGGGCGCCCCCCGTCTTCGCCGGCACGTCCTCGATGCCGTTGTGCATCAGGGACACCGGCCGC]
[-] EMBL BQ908063             [TTTTTTAATCACGTCGGGAATTCAGCCTTATAATCACGTCGGGAATTCGAGCACAAAACTAGTATGAACATATCAGATATTCAAGTTTGCTTGTTTGTAGCATAGGATATAGTTTGAGCAAAACAAAGAAAGAAGTGCAATGTTCAGCGGTTGAGTTTTCC TTTGGCAACGAAACACAAGATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAGTCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGC ACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCA CCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAGCCGCGGGCAACCCCTCGTCTGCACGCGCCGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB649722             [                                                                                                                                             GTTCAGCGGGTGAGTTTTCCTTTTGGCAACGAAACACAAGATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAGTCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGC ACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCA CCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAGCCGCGGGCAACCCCTCGTCTGCACGCGCCGGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGACCCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCACCGTCCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACTCCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGGCCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCAGGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCGTGCGTCGGCGACGATCTCCTCGACGTCGGAGGAGTAGATGGTCATCTCCCTGATGCTCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL C73060               [                                                                                                                                                                                                                                                     AAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGCAACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCACCCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAGCCGCGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB633306             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GACGCCGCACCGTGGGACCACGCCACGGTGCGGAGCTTCGTCAGGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCGTGCGTCGGCGACGATCTCCTCGACGTCGCAGGAGTAGATGGTCATCTCCCTGATGCTCTCCTGCACGCCGCCGAACTCCGCCGCGTGCTGCGCGGACAGCAGCGGCAGGGACCGCGTGCCGTCCTGCAGCTTGCGGAGGTGGAGCGACCGGGCGCGCACGCCAGGTGCCAGCCTCGCGAGCCTCGCCACGTCCCTGGTGCTGTCCAGCCACAGGCCCAGCGCCGTCAGCTGCGCGCCGCTGCTCTCAAGATCATCAATTACCGGCGCGATGTAGTCGTCCGCGATGGAGACGATGCTCGCGGTGAACAGTTCGAGCACCTGCAGCTTCCCGAGCCGTGAGATCAGCCCGGCCGGTATGGTGATCTGGATGTAGTAGTTGTCGCGCAGGTAGAGGTACTTGAGCTGGCTCAGGTTGCTCAGCTCCATCGGCAGCGACAGGATCCTGTTCTTGGAGAGGTTGAGGTACTCCAGGTTGACCAAGCAGCAGATCTCCATCGGGAACGCGTCGACGATGCCGGTCTCCTCCATGTCAAGGTAGGTCAGCCTTGTGAAGTGCTGGATCGCCTGGATCATCCTCTTCGGCAGGGCACGGTTGCACTGGAGCATCAGCGTCTCCGGCTGCGCGTCCGCGAGGGCGCCCCCCGTCTTCGCCGGCACGTCCTCGATGCCGTTGTGCATCAGGGACACCGGCCGC]
consensusID : consensus_8755#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 761 fasta sequence 
                              [TCTTTTTTTTTTTTTTAAGTGCAATGTTCAGCGGTTGAGTTCCCCTTTTGGCAACGAAACACAAGATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAGTCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGCACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCACCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAACCGCGGGCAACCCCTCGTCTGCACGCGCCGGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGACCCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCACCGTTCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACTCCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGGCCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCAGGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCG]
[+] EMBL CB633307             [TCTTTTTTTTTTTTTTAAGTGCAATGTTCAGCGGTTGAGTTCCCCTTTTGGCAACGAAACACAAGATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAGTCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAACCTCTGCATCGGAAAATCGGATGCACGCACGCGCGGCACGGCGCGGCGAGATTGCAGCGACGACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCGCCCACTGCAGCGCGCCCCACCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGCTCGCCGCCGGCCGCATCGGGATGCGCCTCAACCGCGGGCAACCCCTCGTCTGCACGCGCCGGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGACCCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCACCGTTCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACTCCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGGCCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCAGGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8755#0      TTTTTTAATCACGTCGGGAATTCAGCCTTATAATCACGTCGGGAATTCGAGCACAAAACT 60
consensus_8755#1      ------------------------------------------------------------
                                                                                  
consensus_8755#0      AGTATGAACATATCAGATATTCAAGTTTGCTTGTTTGTAGCATAGGATATAGTTTGAGCA 120
consensus_8755#1      --------------------------------------------------------TCTT 4
                                                                                  
consensus_8755#0      AAACAAAGAAAGAAGTGCAATGTTCAGCGGTTGAGTTTTCCTTT-GGCAACGAAACACAA 179
consensus_8755#1      TTTTTTTTTTTTAAGTGCAATGTTCAGCGGTTGAGTTCCCCTTTTGGCAACGAAACACAA 64
                                  *************************  ***** ***************
consensus_8755#0      GATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAG 239
consensus_8755#1      GATGTTCAAAAGAAACCGTCCCAAATTTAAAGGAAAATGAAAAATAATCCAAATTAACAG 124
                      ************************************************************
consensus_8755#0      TCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAAC 299
consensus_8755#1      TCACCAAATTTCCCCCGACGTTCCTTCCCTAACAGATCAGCACGTCTCCAAAACTTCAAC 184
                      ************************************************************
consensus_8755#0      CTCTGCATCGGAAAATCGGATGCACGCACGCGCGGCACGGCGCGGCGAGATTGCAGCGAC 359
consensus_8755#1      CTCTGCATCGGAAAATCGGATGCACGCACGCGCGGCACGGCGCGGCGAGATTGCAGCGAC 244
                      ************************************************************
consensus_8755#0      GACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCG 419
consensus_8755#1      GACGACGTTGTTTTGTTCAGATCAGCACGGGCGCGAAGTAGGACTTGACGTCGTCGCTCG 304
                      ************************************************************
consensus_8755#0      CCCACTGCAGCGCGCCCCACCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGC 479
consensus_8755#1      CCCACTGCAGCGCGCCCCACCAGTGCTTGTCGCACTCCACCCTCACCTTGCACTGCCCGC 364
                      ************************************************************
consensus_8755#0      TCGCCGCCGGCCGCATCGGGATGCGCCTCAGCCGCGGGCAACCCCTCGTCTGCACGCGCC 539
consensus_8755#1      TCGCCGCCGGCCGCATCGGGATGCGCCTCAACCGCGGGCAACCCCTCGTCTGCACGCGCC 424
                      ****************************** *****************************
consensus_8755#0      GGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGAC 599
consensus_8755#1      GGAGCTCCGGGAACGCGCACTCCCCGCCGTCGCCGCGGATGGCCTCCAGCTTGGGCAGAC 484
                      ************************************************************
consensus_8755#0      CCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCAC 659
consensus_8755#1      CCAGCAGCGCCAGCAGACGCAGCCGCGGGAACGTCACCAGCTCACCCGCCGCGCTGCCAC 544
                      ************************************************************
consensus_8755#0      CGTCCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACT 719
consensus_8755#1      CGTTCGCGGCGCCGCCCAGCAGCGTCGTCATGCCGTTGCACCCGCTGAGGTTGAGCGACT 604
                      *** ********************************************************
consensus_8755#0      CCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGG 779
consensus_8755#1      CCAGGTGCGGGAGGTGCTGCACCCACGTCAGGTGCGCCACGGCGTGGCACGCGCCGATGG 664
                      ************************************************************
consensus_8755#0      CCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCA 839
consensus_8755#1      CCACCTCCCGGAGGTTGGACGCCGCCCCGTGGGACCACGCCACGGTGCGGAGCTTCGTCA 724
                      ************************************************************
consensus_8755#0      GGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCGTGCGTCGGCGACGATCTCCTCGA 899
consensus_8755#1      GGAACCCGAACTTGATCACCTCCAGCCTCGGCGCGCG----------------------- 761
                      *************************************                       
consensus_8755#0      CGTCGGAGGAGTAGATGGTCATCTCCCTGATGCTCTCCTGCACGCCGCCGAACTCCGCCG 959
consensus_8755#1      ------------------------------------------------------------
                                                                                  
consensus_8755#0      CGTGCTGCGCGGACAGCAGCGGCAGGGACCGCGTGCCGTCCTGCAGCTTGCGGAGGTGGA 1019
consensus_8755#1      ------------------------------------------------------------
                                                                                  
consensus_8755#0      GCGACCGGGCGCGCACGCCAGGTGCCAGCCTCGCGAGCCTCGCCACGTCCCTGGTGCTGT 1079
consensus_8755#1      ------------------------------------------------------------
                                                                                  
consensus_8755#0      CCAGCCACAGGCCCAGCGCCGTCAGCTGCGCGCCGCTGCTCTCAAGATCATCAATTACCG 1139
consensus_8755#1      ------------------------------------------------------------
                                                                                  
consensus_8755#0      GCGCGATGTAGTCGTCCGCGATGGAGACGATGCTCGCGGTGAACAGTTCGAGCACCTGCA 1199
consensus_8755#1      ------------------------------------------------------------
                                                                                  
consensus_8755#0      GCTTCCCGAGCCGTGAGATCAGCCCGGCCGGTATGGTGATCTGGATGTAGTAGTTGTCGC 1259
consensus_8755#1      ------------------------------------------------------------
                                                                                  
consensus_8755#0      GCAGGTAGAGGTACTTGAGCTGGCTCAGGTTGCTCAGCTCCATCGGCAGCGACAGGATCC 1319
consensus_8755#1      ------------------------------------------------------------
                                                                                  
consensus_8755#0      TGTTCTTGGAGAGGTTGAGGTACTCCAGGTTGACCAAGCAGCAGATCTCCATCGGGAACG 1379
consensus_8755#1      ------------------------------------------------------------
                                                                                  
consensus_8755#0      CGTCGACGATGCCGGTCTCCTCCATGTCAAGGTAGGTCAGCCTTGTGAAGTGCTGGATCG 1439
consensus_8755#1      ------------------------------------------------------------
                                                                                  
consensus_8755#0      CCTGGATCATCCTCTTCGGCAGGGCACGGTTGCACTGGAGCATCAGCGTCTCCGGCTGCG 1499
consensus_8755#1      ------------------------------------------------------------
                                                                                  
consensus_8755#0      CGTCCGCGAGGGCGCCCCCCGTCTTCGCCGGCACGTCCTCGATGCCGTTGTGCATCAGGG 1559
consensus_8755#1      ------------------------------------------------------------
                                                                                  
consensus_8755#0      ACACCGGCCGC 1570
consensus_8755#1      -----------
                                 
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||