These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8756#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 941 fasta sequence [CAAGTGGTGCAGGCTTTTAAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATTGGTGGGAATGATCTTCCACCTTTGACGTATCCTCCTGCAGTATTTGAAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGTTCTAGTAGTGATTCAGAATCATCCTCCAGTGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAATGTTCCTCCATCAACAAGTGGGGCCAAGGACAACACGCAATCTGCGGTTAGGTTGGATCAGGAAAACGATNCACTGAGCTCGACCAATCTACCACAACAAAGTAGTGATCCTGTACCTATTTCTGCCG-AGATGAGGGGGAG-ATGTGGCTGAG-AACAGGTNCCCCCNGCAAAGCAATACCGAGCTGCTGTTTTGTTAAACCGCTTTGCTGATACAATTTTTAAGGCTCGTGAGAAAACTCTTGATCAGGTCGCGAAAAAGGATCCTGAGAAACTTCAACACGACATGGAGGAGCTTGAAAGGTTACGNAGAGAAGAGAGAGCTCGGATACAAGCTNGAGGCAAAAGCAGCTTGAAGATTGCTTCGCAAGAGAGCTTGAGGGC] [+] EMBL CB640579 [CAAGTGGTGCAGGCTTTTAAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATTGGTGGGAATGATCTTCCACCTTTGACGTATCCTCCTGCAGTATTTGAAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGTTCTAGTAGTGATTCAGAATCATCCTCCAGTGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAATGT ] [+] EMBL CB640585 [CAAGTGGTGCAGGCTTTTAAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATTGGTGGGAATGATCTTCCACCTTTGACGTATCCTCCTGCAGTATTTGAAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGTTCTAGTAGTGATTCAGAATCATCCTCCAGTGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAAT ] [+] EMBL AU056111 [ TACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATTGGTGGGAATGATCTTCCACCTTTGACGTATCCTCCTGCAGTATTTGAAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGTTCTAGTAGTGATTCAGAATCATCCTCCAGTGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAATGTTCCTCCATCAACAAGTGGGGCCAAGGACAACACGCAATCTGCGGTTAGGTTGGATCAGGAAAACGATNCACTGAGCTCGACCAATCTACCACAACAAAGTAGTGATCCTGTACCTATTTCTGCCG AGATGAGGGGGAG ATGTGGCTGAG AACAGGTNCCCCCNGCAAAGCAATACCGAGC ] [+] EMBL D43577 [ GGAAAACGATCCACTGAGCTCGACCAATCTACCACAACAAAGTAGTGATCCTGTACCTATTTCTGCCGAAGATGAGGGGGAGAATGTGTCTGAGAAACAGGTCCCCCCTGCAAAGCAATACCGAGCTGCTGTTTTGTTAAACCGCTTTGCTGATACAATTTTTAAGGCTCGTGAGAAAACTCTTGATCAGGTCGCGAAAAAGGATCCTGAGAAACTTCAACACGACATGGAGGAGCTTGAAAGGTTACGNAGAGAAGAGAGAGCTCGGATACAAGCTNGAGGCAAAAGCAGCTTGAAGATTGCTTCGCAAGAGAGCTTGAGGGC] consensusID : consensus_8756#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 883 fasta sequence [AGAAAGATATGTTTAAAAAAGAGGATGCTTCAACTAAGCCAGCTTTGCAACCAAAGAAGAGAAAAGCTTCTCCCTTGGTTCAGGGTTCTCTTGAAATACCTGTAGTAGAAGCTGATAAGGTCATTGATGATGCTCAAGTGGTACAGCCTTCTAAGGTGATTGATGATGCCCAAGTGGTGCAGGCTTTTGAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGGTGGGTGCTGTTGTATTATAGTTATCTTTTTCATCGGTTAATTAGCTGATTACTGTTTTCCAATCTGTTTGGCAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATCGGTGGGAATGATCTTNCACCTTTGACGTATCCTCCTGCAGTATTTGGAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGNTCTAGTAGTGATTCAGAATCATCCTNCAGNGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAATGGTNCTNCATCAACAAGGGGGGNCAAGGCCACACCNCAATCTGCAGNTAGGNTGGATCAGGNAAACGGGATGGGGCT] [+] EMBL CA763986 [AGAAAGATATGTTTAAAAAAGAGGATGCTTCAACTAAGCCAGCTTTGCAACCAAAGAAGAGAAAAGCTTCTCCCTTGGTTCAGGGTTCTCTTGAAATACCTGTAGTAGAAGCTGATAAGGTCATTGATGATGCTCAAGTGGTACAGCCTTCTAAGGTGATTGATGATGCCCAAGTGGTGCAGGCTTTTGAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGGTGGGTGCTGTTGTATTATAGTTATCTTTTTCATCGGTTAATTAGCTGATTACTGTTTTCCAATCTGTTTGGCAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATCGGTGGGAATGATCTTNCACCTTTGACGTATCCTCCTGCAGTATTTGGAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGNTCTAGTAGTGATTCAGAATCATCCTNCAGNGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAATGGTNCTNCATCAACAAGGGGGGNCAAGGCCACACCNCAATCTGCAGNTAGGNTGGATCAGGNAAACGGGATGGGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8756#0 ------------------------------------------------------------ consensus_8756#1 AGAAAGATATGTTTAAAAAAGAGGATGCTTCAACTAAGCCAGCTTTGCAACCAAAGAAGA 60 consensus_8756#0 ------------------------------------------------------------ consensus_8756#1 GAAAAGCTTCTCCCTTGGTTCAGGGTTCTCTTGAAATACCTGTAGTAGAAGCTGATAAGG 120 consensus_8756#0 --------------------------------------------------CAAGTGGTGC 10 consensus_8756#1 TCATTGATGATGCTCAAGTGGTACAGCCTTCTAAGGTGATTGATGATGCCCAAGTGGTGC 180 ********** consensus_8756#0 AGGCTTTTAAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGG 70 consensus_8756#1 AGGCTTTTGAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGG 240 ******** *************************************************** consensus_8756#0 ACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATC 130 consensus_8756#1 ACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATC 300 ************************************************************ consensus_8756#0 ATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGT 190 consensus_8756#1 ATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGT 360 ************************************************************ consensus_8756#0 TAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTG 250 consensus_8756#1 TAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTG 420 ************************************************************ consensus_8756#0 ATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTG 310 consensus_8756#1 ATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTG 480 ************************************************************ consensus_8756#0 AG---------------------------------------------------------- 312 consensus_8756#1 AGGTGGGTGCTGTTGTATTATAGTTATCTTTTTCATCGGTTAATTAGCTGATTACTGTTT 540 ** consensus_8756#0 -----------------TTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATG 355 consensus_8756#1 TCCAATCTGTTTGGCAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATG 600 ******************************************* consensus_8756#0 AAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATTGGTGGGAATGATCTTCCACCTT 415 consensus_8756#1 AAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATCGGTGGGAATGATCTTNCACCTT 660 ************************************* *************** ****** consensus_8756#0 TGACGTATCCTCCTGCAGTATTTGAAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCA 475 consensus_8756#1 TGACGTATCCTCCTGCAGTATTTGGAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCA 720 ************************ *********************************** consensus_8756#0 CTTCTAGCAGTTCTAGTAGTGATTCAGAATCATCCTCCAGTGATTCAGATTCAAGTAGCT 535 consensus_8756#1 CTTCTAGCAGNTCTAGTAGTGATTCAGAATCATCCTNCAGNGATTCAGATTCAAGTAGCT 780 ********** ************************* *** ******************* consensus_8756#0 CTTCTGGAAGCGATCTGGATGTCAATGTTCCTCCATCAACAAGTGGGGCCAAGGACAACA 595 consensus_8756#1 CTTCTGGAAGCGATCTGGATGTCAATGGTNCTNCATCAACAAGGGGGGNCAAGGCCACAC 840 *************************** * ** ********** **** ***** ** consensus_8756#0 CGCAATCTGCGGTTAGGTTGGATCAGGAAAACGATNCACTGAGCTCGACCAATCTACCAC 655 consensus_8756#1 CNCAATCTGCAGNTAGGNTGGATCAGGNAAACG--GGATGGGGCT--------------- 883 * ******** * **** ********* ***** * * *** consensus_8756#0 AACAAAGTAGTGATCCTGTACCTATTTCTGCCGAGATGAGGGGGAGATGTGGCTGAGAAC 715 consensus_8756#1 ------------------------------------------------------------ consensus_8756#0 AGGTNCCCCCNGCAAAGCAATACCGAGCTGCTGTTTTGTTAAACCGCTTTGCTGATACAA 775 consensus_8756#1 ------------------------------------------------------------ consensus_8756#0 TTTTTAAGGCTCGTGAGAAAACTCTTGATCAGGTCGCGAAAAAGGATCCTGAGAAACTTC 835 consensus_8756#1 ------------------------------------------------------------ consensus_8756#0 AACACGACATGGAGGAGCTTGAAAGGTTACGNAGAGAAGAGAGAGCTCGGATACAAGCTN 895 consensus_8756#1 ------------------------------------------------------------ consensus_8756#0 GAGGCAAAAGCAGCTTGAAGATTGCTTCGCAAGAGAGCTTGAGGGC 941 consensus_8756#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||