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Oryza sativa
cluster # 8756 cluster # 8756       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8756#0 length = 941 sequences # 4  
consensus_8756#1 length = 883 sequences # 1  

consensusID : consensus_8756#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 941
fasta sequence
                              [CAAGTGGTGCAGGCTTTTAAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATTGGTGGGAATGATCTTCCACCTTTGACGTATCCTCCTGCAGTATTTGAAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGTTCTAGTAGTGATTCAGAATCATCCTCCAGTGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAATGTTCCTCCATCAACAAGTGGGGCCAAGGACAACACGCAATCTGCGGTTAGGTTGGATCAGGAAAACGATNCACTGAGCTCGACCAATCTACCACAACAAAGTAGTGATCCTGTACCTATTTCTGCCG-AGATGAGGGGGAG-ATGTGGCTGAG-AACAGGTNCCCCCNGCAAAGCAATACCGAGCTGCTGTTTTGTTAAACCGCTTTGCTGATACAATTTTTAAGGCTCGTGAGAAAACTCTTGATCAGGTCGCGAAAAAGGATCCTGAGAAACTTCAACACGACATGGAGGAGCTTGAAAGGTTACGNAGAGAAGAGAGAGCTCGGATACAAGCTNGAGGCAAAAGCAGCTTGAAGATTGCTTCGCAAGAGAGCTTGAGGGC]

[+] EMBL CB640579             [CAAGTGGTGCAGGCTTTTAAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATTGGTGGGAATGATCTTCCACCTTTGACGTATCCTCCTGCAGTATTTGAAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGTTCTAGTAGTGATTCAGAATCATCCTCCAGTGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAATGT                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB640585             [CAAGTGGTGCAGGCTTTTAAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATTGGTGGGAATGATCTTCCACCTTTGACGTATCCTCCTGCAGTATTTGAAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGTTCTAGTAGTGATTCAGAATCATCCTCCAGTGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAAT                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU056111             [                                           TACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATTGGTGGGAATGATCTTCCACCTTTGACGTATCCTCCTGCAGTATTTGAAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGTTCTAGTAGTGATTCAGAATCATCCTCCAGTGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAATGTTCCTCCATCAACAAGTGGGGCCAAGGACAACACGCAATCTGCGGTTAGGTTGGATCAGGAAAACGATNCACTGAGCTCGACCAATCTACCACAACAAAGTAGTGATCCTGTACCTATTTCTGCCG AGATGAGGGGGAG ATGTGGCTGAG AACAGGTNCCCCCNGCAAAGCAATACCGAGC                                                                                                                                                                                                      ]
[+] EMBL D43577               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGAAAACGATCCACTGAGCTCGACCAATCTACCACAACAAAGTAGTGATCCTGTACCTATTTCTGCCGAAGATGAGGGGGAGAATGTGTCTGAGAAACAGGTCCCCCCTGCAAAGCAATACCGAGCTGCTGTTTTGTTAAACCGCTTTGCTGATACAATTTTTAAGGCTCGTGAGAAAACTCTTGATCAGGTCGCGAAAAAGGATCCTGAGAAACTTCAACACGACATGGAGGAGCTTGAAAGGTTACGNAGAGAAGAGAGAGCTCGGATACAAGCTNGAGGCAAAAGCAGCTTGAAGATTGCTTCGCAAGAGAGCTTGAGGGC]


>consensus_8756#0 CAAGTGGTGCAGGCTTTTAAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAG ATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTG ATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGAT GAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAG AAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCAT CGTGAGGTTGAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAA GGTAATGAGCTCGTTGAAGAAGATGTTGATATTGGTGGGAATGATCTTCCACCTTTGACG TATCCTCCTGCAGTATTTGAAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCT AGCAGTTCTAGTAGTGATTCAGAATCATCCTCCAGTGATTCAGATTCAAGTAGCTCTTCT GGAAGCGATCTGGATGTCAATGTTCCTCCATCAACAAGTGGGGCCAAGGACAACACGCAA TCTGCGGTTAGGTTGGATCAGGAAAACGATNCACTGAGCTCGACCAATCTACCACAACAA AGTAGTGATCCTGTACCTATTTCTGCCGAGATGAGGGGGAGATGTGGCTGAGAACAGGTN CCCCCNGCAAAGCAATACCGAGCTGCTGTTTTGTTAAACCGCTTTGCTGATACAATTTTT AAGGCTCGTGAGAAAACTCTTGATCAGGTCGCGAAAAAGGATCCTGAGAAACTTCAACAC GACATGGAGGAGCTTGAAAGGTTACGNAGAGAAGAGAGAGCTCGGATACAAGCTNGAGGC AAAAGCAGCTTGAAGATTGCTTCGCAAGAGAGCTTGAGGGC



consensusID : consensus_8756#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 883
fasta sequence
                              [AGAAAGATATGTTTAAAAAAGAGGATGCTTCAACTAAGCCAGCTTTGCAACCAAAGAAGAGAAAAGCTTCTCCCTTGGTTCAGGGTTCTCTTGAAATACCTGTAGTAGAAGCTGATAAGGTCATTGATGATGCTCAAGTGGTACAGCCTTCTAAGGTGATTGATGATGCCCAAGTGGTGCAGGCTTTTGAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGGTGGGTGCTGTTGTATTATAGTTATCTTTTTCATCGGTTAATTAGCTGATTACTGTTTTCCAATCTGTTTGGCAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATCGGTGGGAATGATCTTNCACCTTTGACGTATCCTCCTGCAGTATTTGGAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGNTCTAGTAGTGATTCAGAATCATCCTNCAGNGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAATGGTNCTNCATCAACAAGGGGGGNCAAGGCCACACCNCAATCTGCAGNTAGGNTGGATCAGGNAAACGGGATGGGGCT]

[+] EMBL CA763986             [AGAAAGATATGTTTAAAAAAGAGGATGCTTCAACTAAGCCAGCTTTGCAACCAAAGAAGAGAAAAGCTTCTCCCTTGGTTCAGGGTTCTCTTGAAATACCTGTAGTAGAAGCTGATAAGGTCATTGATGATGCTCAAGTGGTACAGCCTTCTAAGGTGATTGATGATGCCCAAGTGGTGCAGGCTTTTGAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGGACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAGGTGGGTGCTGTTGTATTATAGTTATCTTTTTCATCGGTTAATTAGCTGATTACTGTTTTCCAATCTGTTTGGCAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATCGGTGGGAATGATCTTNCACCTTTGACGTATCCTCCTGCAGTATTTGGAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCACTTCTAGCAGNTCTAGTAGTGATTCAGAATCATCCTNCAGNGATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTCAATGGTNCTNCATCAACAAGGGGGGNCAAGGCCACACCNCAATCTGCAGNTAGGNTGGATCAGGNAAACGGGATGGGGCT]


>consensus_8756#1 AGAAAGATATGTTTAAAAAAGAGGATGCTTCAACTAAGCCAGCTTTGCAACCAAAGAAGA GAAAAGCTTCTCCCTTGGTTCAGGGTTCTCTTGAAATACCTGTAGTAGAAGCTGATAAGG TCATTGATGATGCTCAAGTGGTACAGCCTTCTAAGGTGATTGATGATGCCCAAGTGGTGC AGGCTTTTGAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGG ACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATC ATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGT TAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTG ATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTG AGGTGGGTGCTGTTGTATTATAGTTATCTTTTTCATCGGTTAATTAGCTGATTACTGTTT TCCAATCTGTTTGGCAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATG AAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATCGGTGGGAATGATCTTNCACCTT TGACGTATCCTCCTGCAGTATTTGGAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCA CTTCTAGCAGNTCTAGTAGTGATTCAGAATCATCCTNCAGNGATTCAGATTCAAGTAGCT CTTCTGGAAGCGATCTGGATGTCAATGGTNCTNCATCAACAAGGGGGGNCAAGGCCACAC CNCAATCTGCAGNTAGGNTGGATCAGGNAAACGGGATGGGGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8756#0      ------------------------------------------------------------
consensus_8756#1      AGAAAGATATGTTTAAAAAAGAGGATGCTTCAACTAAGCCAGCTTTGCAACCAAAGAAGA 60
                                                                                  

consensus_8756#0      ------------------------------------------------------------
consensus_8756#1      GAAAAGCTTCTCCCTTGGTTCAGGGTTCTCTTGAAATACCTGTAGTAGAAGCTGATAAGG 120
                                                                                  

consensus_8756#0      --------------------------------------------------CAAGTGGTGC 10
consensus_8756#1      TCATTGATGATGCTCAAGTGGTACAGCCTTCTAAGGTGATTGATGATGCCCAAGTGGTGC 180
                                                                        **********

consensus_8756#0      AGGCTTTTAAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGG 70
consensus_8756#1      AGGCTTTTGAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGATTATGACGG 240
                      ******** ***************************************************

consensus_8756#0      ACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATC 130
consensus_8756#1      ACAGACAAAAGTATGAGCTAAGCGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATC 300
                      ************************************************************

consensus_8756#0      ATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGT 190
consensus_8756#1      ATGTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGT 360
                      ************************************************************

consensus_8756#0      TAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTG 250
consensus_8756#1      TAGAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTG 420
                      ************************************************************

consensus_8756#0      ATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTG 310
consensus_8756#1      ATGACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTG 480
                      ************************************************************

consensus_8756#0      AG---------------------------------------------------------- 312
consensus_8756#1      AGGTGGGTGCTGTTGTATTATAGTTATCTTTTTCATCGGTTAATTAGCTGATTACTGTTT 540
                      **                                                          

consensus_8756#0      -----------------TTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATG 355
consensus_8756#1      TCCAATCTGTTTGGCAGTTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATG 600
                                       *******************************************

consensus_8756#0      AAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATTGGTGGGAATGATCTTCCACCTT 415
consensus_8756#1      AAGAAGGTAATGAGCTCGTTGAAGAAGATGTTGATATCGGTGGGAATGATCTTNCACCTT 660
                      ************************************* *************** ******

consensus_8756#0      TGACGTATCCTCCTGCAGTATTTGAAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCA 475
consensus_8756#1      TGACGTATCCTCCTGCAGTATTTGGAAGTGAAACTGCAGAAAGAAGCAGCAAGCATAGCA 720
                      ************************ ***********************************

consensus_8756#0      CTTCTAGCAGTTCTAGTAGTGATTCAGAATCATCCTCCAGTGATTCAGATTCAAGTAGCT 535
consensus_8756#1      CTTCTAGCAGNTCTAGTAGTGATTCAGAATCATCCTNCAGNGATTCAGATTCAAGTAGCT 780
                      ********** ************************* *** *******************

consensus_8756#0      CTTCTGGAAGCGATCTGGATGTCAATGTTCCTCCATCAACAAGTGGGGCCAAGGACAACA 595
consensus_8756#1      CTTCTGGAAGCGATCTGGATGTCAATGGTNCTNCATCAACAAGGGGGGNCAAGGCCACAC 840
                      *************************** * ** ********** **** ***** **   

consensus_8756#0      CGCAATCTGCGGTTAGGTTGGATCAGGAAAACGATNCACTGAGCTCGACCAATCTACCAC 655
consensus_8756#1      CNCAATCTGCAGNTAGGNTGGATCAGGNAAACG--GGATGGGGCT--------------- 883
                      * ******** * **** ********* *****    *  * ***               

consensus_8756#0      AACAAAGTAGTGATCCTGTACCTATTTCTGCCGAGATGAGGGGGAGATGTGGCTGAGAAC 715
consensus_8756#1      ------------------------------------------------------------
                                                                                  

consensus_8756#0      AGGTNCCCCCNGCAAAGCAATACCGAGCTGCTGTTTTGTTAAACCGCTTTGCTGATACAA 775
consensus_8756#1      ------------------------------------------------------------
                                                                                  

consensus_8756#0      TTTTTAAGGCTCGTGAGAAAACTCTTGATCAGGTCGCGAAAAAGGATCCTGAGAAACTTC 835
consensus_8756#1      ------------------------------------------------------------
                                                                                  

consensus_8756#0      AACACGACATGGAGGAGCTTGAAAGGTTACGNAGAGAAGAGAGAGCTCGGATACAAGCTN 895
consensus_8756#1      ------------------------------------------------------------
                                                                                  

consensus_8756#0      GAGGCAAAAGCAGCTTGAAGATTGCTTCGCAAGAGAGCTTGAGGGC 941
consensus_8756#1      ----------------------------------------------
                                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)