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Oryza sativa
cluster # 8761 cluster # 8761       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8761#0 length = 1003 sequences # 4  
consensus_8761#1 length = 688 sequences # 1  

consensusID : consensus_8761#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1003
fasta sequence
                              [ACCGCCGGCGCCGACGGCGGCATCCAGATCGCGTTCAGCACGAGCGCCCCGGCGTCGAAGCGGGCGAAGCCGTCGCTGAGCAGCAGCTCGTCGAGCATCAGCTTCGACGGCAGGGGCCCCGGCGGCAACTGCGGCGGCGGCGGCGGCGACGACCCACTGTACGAGCCCGACACGGAGGCGCTGGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCCGTGACCCTCGGCGCCGAGGACGCCGGCGAGCGCCCCCGCCGCCGCAACGTGCGCATCTCCTCCGACCCGCAGACGGTGGCGGCGCGGCAGCGGCGGGAGCGCATCAGCGAGCGCCTGCGCGTCCTGCAGAAGCTCGTCCCCGGCGGCGCCAAGATGGACACGGCCTCCATGCTCGACGAGGCCGCCAACTACCTCCGCTTCCTCAAGTCCCAGATCAGGGAGCTGCAAACCCTAGACCGCCGGAACTACCCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCACCAACCTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTCCCGGAAACCCTAGGATGC---GGAGGAGGAGGAGTCGAGCAGCTGATCTAATCAATTTAGCTAGATAGATTGGAGACGACGACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCATGCAAAGCAACTGTTG-CAATGTGTTGTCCAATGTGAGACCATCATATGATAGATTCATCATTGTTAGGCATGGTGATTAACTAGCTACGATCATATCGATGGAATCATCATGCATGTCATGGACCCTATTAGCTAGC-TTTTTTTTTTCTCTTCTCTTTTTTCTTCTTCTTCTCCTTGTCGTCATAATTTAGTTCTGATCAGTTTGATGATCATGTATGCATTGCATGTCCAGCCTACGTGCTTTATTTCCGAGCTAGAGATCGATTATATATCATCTATCAACAAAAAAAAAAG]

[+] EMBL CB662791             [ACCGCCGGCGCCGACGGCGGCATCCAGATCGCGTTCAGCACGAGCGCCCCGGCGTCGAAGCGGGCGAAGCCGTCGCTGAGCAGCAGCTCGTCGAGCATCAGCTTCGACGGCAGGGGCCCCGGCGGCAACTGCGGCGGCGGCGGCGGCGACGACCCACTGTACGAGCCCGACACGGAGGCGCTGGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCCGTGACCCTCGGCGCCGAGGACGCCGGCGAGCGCCCCCGCCGCCGCAACGTGCGCATCTCCTCCGACCCGCAGACGGTGGCGGCGCGGCAGCGGCGGGAGCGCATCAGCGAGCGCCTGCGCGTCCTGCAGAAGCTCGTCCCCGGCGGCGCCAAGATGGACACGGCCTCCATGCTCGACGAGGCCGCCAACTACCTCCGCTTCCTCAAGTCCCAGATCAGGGAGCTGCAAACCCTAGACCGCCGGAACTACCCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCACCAACCTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTCCCGGAAACCCTAGGATGC   GGAGGAGGAGGAGTCGAGCAGCTGATCTAATCAATTTAGCTAGATAGATTGGAGACGACGACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCATGCAAAGCAACTGTTG CAATGTGTTGTCCAATGTGAGACCATCATATGATAGATTCATCATTGTTAGGCATGGTGATTTACTAGCTACGATCATATCGATGGAATCATC                                                                                                                                                                                          ]
[-] EMBL CB662792             [                                                                                                                                                                                                                                     TGACCCTCGGCGCCGAGGACGCCGGCGAGCGCCCCCGCCGCCGCAACGTGCGCATCTCCTCCGACCCGCAGACGGTGGCGGCGCGGCAGCGGCGGGAGCGCATCAGCGAGCGCCTGCGCGTCCTGCAGAAGCTCGTCCCCGGCGGCGCCAAGATGGACACGGCCTCCATGCTCGACGAGGCCGCCAACTACCTCCGCTTCCTCAAGTCCCAGATCAGGGAGCTGCAAACCCTAGACCGCCGGAACTACCCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCACCAACCTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTCCCGGAAACCCTAGGATGC   GGAGGAGGAGGAGTCGAGCAGCTGATCTAATCAATTTAGCTAGATAGATTGGAGACGACGACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCATGCAAAGCAACTGTTG CAATGTGTTGTCCAATGTGAGACCATCATATGATAGATTCATCATTGTTAGGCATGGTGATTAACTAGCTACGATCATATCGATGGAATCATCATGCATGCCATGGACCCTATTAGCTAGCTTTTTTTTTTTCTCTTCTCCTTTTTCTTCTTCTTCTCCTTGTCGTCATAATTTAGTTCTGATCAGTTTGATGATCATGTATGCATTGCATGTCCAGCCTACGTGCTTTATTTCCGAGCTAGAGATCGATTATATATCATCTATCAACAAAAAAAAAAG]
[-] EMBL CB629361             [                                                                                                                                                                                                                                     TGACCCTCGGCGCCGAGGACGCCGGCGAGCGCCCCCGCCGCCGCAACGTGCGCATCTCCTCCGACCCGCAGACGGTGGCGGCGCGGCAGCGGCGGGAGCGCATCAGCGAGCGCCTGCGCGTCCTGCAGAAGCTCGTGCCCGGCGGCGCCAAGATGGACACGGCCTCCATGCTCGACGAGGCCGCCAACTACCTCCGCTTCCTCAAGTCCCAGATCAGGGAGCTGCAAACCCTAGACCGCCGGAACTACCCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCACCAACCTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTCCCGGAAACCCTAGGATGCGGAGGAGGAGGAGGAGTCGAGCAGCTGATCTAATCAATTTAGCTAGATAGATTGGAGA  A GACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCATGCAAAGCAACTGTTG CAATGTGTTGTCCAATGTGAGACCATCATATGATAGATTCATCATTGTTAGGCATGGTGATTAACTAGCTACGATCATATCGATGGAATCATCATGCATGTCATGGACCCTATTAGCTAG  TTTTTTTTTTCTCTTCTCTTTTTTCTTCTTCTTCTCCTTGTCGTCATAATTTAGTTCTGATCAGTTTGATGATCATGT                                                                               ]
[+] EMBL BQ908261             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                  gTGC AACCCTAGACCGCCGGAACTACCCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCACCAACCTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTCCCGGAAACCCTAGGATGCGGAGGAGGAGGAGGAGTCGAGCAGCTGATCTAATCCATTTAGCTAGATAGATTGGA   GACGACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCATGCCAAGC ACTGTTGCCAATGTGTTGTCCCATGTGAGACCATCATATGATAGATTCATCATTGTTAGGCATGGTGATTAACTAGCTACGATCATATCGATGGAATCATCATGCATGTCATGGACCCTATTAGCTAGC TTTTTTTTTTCTCTTCTCTTTTTTCTTCTTCTTCTCCTTGTCGTCATAATTTAGTTCTGATCAGTTTGATGATCATGTATGC TTGCATGTCCAGCCTACGTGCTTTATTTTCGAGCTAaaaaaa                                ]


>consensus_8761#0 ACCGCCGGCGCCGACGGCGGCATCCAGATCGCGTTCAGCACGAGCGCCCCGGCGTCGAAG CGGGCGAAGCCGTCGCTGAGCAGCAGCTCGTCGAGCATCAGCTTCGACGGCAGGGGCCCC GGCGGCAACTGCGGCGGCGGCGGCGGCGACGACCCACTGTACGAGCCCGACACGGAGGCG CTGGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCCGTGACCCTCGGC GCCGAGGACGCCGGCGAGCGCCCCCGCCGCCGCAACGTGCGCATCTCCTCCGACCCGCAG ACGGTGGCGGCGCGGCAGCGGCGGGAGCGCATCAGCGAGCGCCTGCGCGTCCTGCAGAAG CTCGTCCCCGGCGGCGCCAAGATGGACACGGCCTCCATGCTCGACGAGGCCGCCAACTAC CTCCGCTTCCTCAAGTCCCAGATCAGGGAGCTGCAAACCCTAGACCGCCGGAACTACCCG AACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCACCA ACCTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTCCCGGAAACCCTAGGATGC GGAGGAGGAGGAGTCGAGCAGCTGATCTAATCAATTTAGCTAGATAGATTGGAGACGACG ACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCATGCAAAGCAAC TGTTGCAATGTGTTGTCCAATGTGAGACCATCATATGATAGATTCATCATTGTTAGGCAT GGTGATTAACTAGCTACGATCATATCGATGGAATCATCATGCATGTCATGGACCCTATTA GCTAGCTTTTTTTTTTCTCTTCTCTTTTTTCTTCTTCTTCTCCTTGTCGTCATAATTTAG TTCTGATCAGTTTGATGATCATGTATGCATTGCATGTCCAGCCTACGTGCTTTATTTCCG AGCTAGAGATCGATTATATATCATCTATCAACAAAAAAAAAAG



consensusID : consensus_8761#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence
                              [AGATGAGCCTCCTGCGTTGCCAAGATGGTCTGAGTGCTCTTCACGGCGACGCGTCCCCGACGTCGGCGGCGGCGGCGTTCCTTGACTCGGTGGATGTGTTGCCAGTGCCGGCCATCGCCGGCGCGACGCACGACGACGGCGGGCTCCTCGATAGGTTCGCGTTCCCGAACGTTGCCGAGACGACGACCGTGCAAGCCGCCGCGTCGAACACCGCCTTCTCCGGATACAGCAGCAACACCACCGGCGGCGGCAACATCTCCTCCGGCGAGTCGAACACCTACACGGAGGTGGCGTCGACGCCGTGCGCCGTGTCGACGACGACGACGACGACGGCTCTGCCCCCGTCGAAGCGGAAGCTACCAGAGAAGTACCCCGTCGTAGGCACATCAGTCAACGACGAAGACCACGACGACGTCGGAGACAGCCGCAGAGCGCCGGAGCACCAAGAGAGCGGCCGGGGGCAGCAGCAGCATCACGTTCGGCGGCGGCCGCCACGGCGCCGGTGCGGCGGCGGCGCTGCTCGGCCTCGGCCGCGGGTACGAGCCGGACACGGAGGCGATAGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCGGTCACCCTCGGCGGCGCCGCCTCCGCCTCCGACCCGTCATCGGCGGCGCCGCCGCCGCCCCAGCGCCGCAGCGTATGTCCCT]

[-] EMBL CB966889             [AGATGAGCCTCCTGCGTTGCCAAGATGGTCTGAGTGCTCTTCACGGCGACGCGTCCCCGACGTCGGCGGCGGCGGCGTTCCTTGACTCGGTGGATGTGTTGCCAGTGCCGGCCATCGCCGGCGCGACGCACGACGACGGCGGGCTCCTCGATAGGTTCGCGTTCCCGAACGTTGCCGAGACGACGACCGTGCAAGCCGCCGCGTCGAACACCGCCTTCTCCGGATACAGCAGCAACACCACCGGCGGCGGCAACATCTCCTCCGGCGAGTCGAACACCTACACGGAGGTGGCGTCGACGCCGTGCGCCGTGTCGACGACGACGACGACGACGGCTCTGCCCCCGTCGAAGCGGAAGCTACCAGAGAAGTACCCCGTCGTAGGCACATCAGTCAACGACGAAGACCACGACGACGTCGGAGACAGCCGCAGAGCGCCGGAGCACCAAGAGAGCGGCCGGGGGCAGCAGCAGCATCACGTTCGGCGGCGGCCGCCACGGCGCCGGTGCGGCGGCGGCGCTGCTCGGCCTCGGCCGCGGGTACGAGCCGGACACGGAGGCGATAGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCGGTCACCCTCGGCGGCGCCGCCTCCGCCTCCGACCCGTCATCGGCGGCGCCGCCGCCGCCCCAGCGCCGCAGCGTATGTCCCT]


>consensus_8761#1 AGATGAGCCTCCTGCGTTGCCAAGATGGTCTGAGTGCTCTTCACGGCGACGCGTCCCCGA CGTCGGCGGCGGCGGCGTTCCTTGACTCGGTGGATGTGTTGCCAGTGCCGGCCATCGCCG GCGCGACGCACGACGACGGCGGGCTCCTCGATAGGTTCGCGTTCCCGAACGTTGCCGAGA CGACGACCGTGCAAGCCGCCGCGTCGAACACCGCCTTCTCCGGATACAGCAGCAACACCA CCGGCGGCGGCAACATCTCCTCCGGCGAGTCGAACACCTACACGGAGGTGGCGTCGACGC CGTGCGCCGTGTCGACGACGACGACGACGACGGCTCTGCCCCCGTCGAAGCGGAAGCTAC CAGAGAAGTACCCCGTCGTAGGCACATCAGTCAACGACGAAGACCACGACGACGTCGGAG ACAGCCGCAGAGCGCCGGAGCACCAAGAGAGCGGCCGGGGGCAGCAGCAGCATCACGTTC GGCGGCGGCCGCCACGGCGCCGGTGCGGCGGCGGCGCTGCTCGGCCTCGGCCGCGGGTAC GAGCCGGACACGGAGGCGATAGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATG CGCCCGGTCACCCTCGGCGGCGCCGCCTCCGCCTCCGACCCGTCATCGGCGGCGCCGCCG CCGCCCCAGCGCCGCAGCGTATGTCCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8761#0      ACCGCCGGCGCCGACGGCGGCATCCAGATCGCGTTCAGCACGAGCGCCCCGGCGTCGAAG 60
consensus_8761#1      ---AGATGAGCCTCCTGCGTTGCCAAGATGG---TCTGAGTGCTCTTCACGGCGACGCGT 54
                             * ***  * ***    * **** *   ** *   *  *  * ***** **   

consensus_8761#0      CGGGCGAAGCCGTCGCTGAGCAGCAGCTCGTCGAGCATCAGCTTCGACGGCAGGGGCCCC 120
consensus_8761#1      CCC-CGACGTCGGCGGCG-GCGGCGTTCCTTGACTCGGTGGATGTGTTGCCAGTG---CC 109
                      *   *** * ** **  * ** **    * *    *    * *  *  * *** *   **

consensus_8761#0      GGCGGCAACTGCGGCGGCGGCGGCGGCGACGACCCACTGTACGAGCCCGACACGGAGGCG 180
consensus_8761#1      GGCCATCGCCGGCGCGACGC--ACGACGACGGCGGGCTC------CTCGATAGGTTCGCG 161
                      ***     * *  *** **    ** ***** *   **       * *** * *   ***

consensus_8761#0      CTGGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCCGTGACCCTCGGC 240
consensus_8761#1      TTCCCGAACGTTGCCGAGACGA-CGACCGTGCAA-GCCGCCGCGTCGAAC-ACCGCCTTC 218
                       *  ** * **    **** ** * **** **   * **  *** *     ***  *  *

consensus_8761#0      GCCGAGGACGCCGGCGAGCGCCCCCGCCGCCGCAACGTGCGCATCTCCTCCGACCCGCAG 300
consensus_8761#1      TCCGGATACAGCAGCAACACCACCGGCGGCGGCAA------CATCTCCTCCGGCGAGTCG 272
                       ***   **  * ** *   * ** ** ** ****      *********** *  *  *

consensus_8761#0      ACGGTGGCGGCGCGGCAGCGGCGGGAGCGCATCAGCGAGCGCCTGCGCGTCCTGCAGAAG 360
consensus_8761#1      A--ACACCTACACGGAGGTGGCG--------TCGACG-----CCGTGCGCCGTGTCGA-- 315
                      *      *  * ***  * ****        **  **     * * *** * **  **  

consensus_8761#0      CTCGTCCCCGGCGGCGCCAAGATGGACACGGCCTCCATGCTCGACGAGGCCGCCAACTAC 420
consensus_8761#1      --------CGACGACGACGACGACGGCTCTGCCCCCGTCGAAGCGGAAGCTACCAGAGAA 367
                              ** ** ** * *    * * * *** ** *    *  ** **  ***   * 

consensus_8761#0      CTCCGCTTCCTCAAGTCCCAGATCAGGGAGCTGCAAACCCTA-GAC--CGCCGGAACTAC 477
consensus_8761#1      GTACCCCGTCGTAGG---CACATCAGTCAACGACGAAGACCACGACGACGTCGGAGACAG 424
                       * * *   *  * *   ** *****  * *  * **  * * ***  ** ****   * 

consensus_8761#0      CCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCA 537
consensus_8761#1      CCGCAGAGCGCCG-GAGCACCAAGAGAGCGGCCGGGGGCAGCA--GCAGCATCACGTTCG 481
                      *** *   ****  *  ** *** *  ** ****    ** **  **  ****  **** 

consensus_8761#0      CCAAC--CTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTC--CCGGAAACCCT 593
consensus_8761#1      GCGGCGGCCGCCACGGCGCCGGTGCGGCGGCGGCGCTGCTCGGCCTCGGCCGCGGGTACG 541
                       *  *  *  * **  *  *   ** **   * *     *** * **  ***      * 

consensus_8761#0      AG---GATGCGGAGGAGGAGGAGTCGAGCAGCTGATCTAATCAATTTAGCTAGATAGATT 650
consensus_8761#1      AGCCGGACACGGAGGCGATAGCG-CAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATG 600
                      **   **  ****** *   * * *  *     **  * *** *    **      *** 

consensus_8761#0      GGAGACGACGACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCAT 710
consensus_8761#1      CGCCCGGTCACCCTCGGCGGCGCCGCCTCCGCCTCCGACCCGTCAT-CGGCGGCGCCGCC 659
                       *    * *  *  ** ** ** ** *   *   **     * *    ******      

consensus_8761#0      GCAAAGCAACTGTTGCAATGTGTTGTCCAATGTGAGACCATCATATGATAGATTCATCAT 770
consensus_8761#1      GCCGCCCCAGCGCCGCAGCGTATGTCCCT------------------------------- 688
                      **    * *  *  ***  ** *   **                                

consensus_8761#0      TGTTAGGCATGGTGATTAACTAGCTACGATCATATCGATGGAATCATCATGCATGTCATG 830
consensus_8761#1      ------------------------------------------------------------
                                                                                  

consensus_8761#0      GACCCTATTAGCTAGCTTTTTTTTTTCTCTTCTCTTTTTTCTTCTTCTTCTCCTTGTCGT 890
consensus_8761#1      ------------------------------------------------------------
                                                                                  

consensus_8761#0      CATAATTTAGTTCTGATCAGTTTGATGATCATGTATGCATTGCATGTCCAGCCTACGTGC 950
consensus_8761#1      ------------------------------------------------------------
                                                                                  

consensus_8761#0      TTTATTTCCGAGCTAGAGATCGATTATATATCATCTATCAACAAAAAAAAAAG 1003
consensus_8761#1      -----------------------------------------------------
                                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)