These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8761#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1003 fasta sequence [ACCGCCGGCGCCGACGGCGGCATCCAGATCGCGTTCAGCACGAGCGCCCCGGCGTCGAAGCGGGCGAAGCCGTCGCTGAGCAGCAGCTCGTCGAGCATCAGCTTCGACGGCAGGGGCCCCGGCGGCAACTGCGGCGGCGGCGGCGGCGACGACCCACTGTACGAGCCCGACACGGAGGCGCTGGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCCGTGACCCTCGGCGCCGAGGACGCCGGCGAGCGCCCCCGCCGCCGCAACGTGCGCATCTCCTCCGACCCGCAGACGGTGGCGGCGCGGCAGCGGCGGGAGCGCATCAGCGAGCGCCTGCGCGTCCTGCAGAAGCTCGTCCCCGGCGGCGCCAAGATGGACACGGCCTCCATGCTCGACGAGGCCGCCAACTACCTCCGCTTCCTCAAGTCCCAGATCAGGGAGCTGCAAACCCTAGACCGCCGGAACTACCCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCACCAACCTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTCCCGGAAACCCTAGGATGC---GGAGGAGGAGGAGTCGAGCAGCTGATCTAATCAATTTAGCTAGATAGATTGGAGACGACGACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCATGCAAAGCAACTGTTG-CAATGTGTTGTCCAATGTGAGACCATCATATGATAGATTCATCATTGTTAGGCATGGTGATTAACTAGCTACGATCATATCGATGGAATCATCATGCATGTCATGGACCCTATTAGCTAGC-TTTTTTTTTTCTCTTCTCTTTTTTCTTCTTCTTCTCCTTGTCGTCATAATTTAGTTCTGATCAGTTTGATGATCATGTATGCATTGCATGTCCAGCCTACGTGCTTTATTTCCGAGCTAGAGATCGATTATATATCATCTATCAACAAAAAAAAAAG] [+] EMBL CB662791 [ACCGCCGGCGCCGACGGCGGCATCCAGATCGCGTTCAGCACGAGCGCCCCGGCGTCGAAGCGGGCGAAGCCGTCGCTGAGCAGCAGCTCGTCGAGCATCAGCTTCGACGGCAGGGGCCCCGGCGGCAACTGCGGCGGCGGCGGCGGCGACGACCCACTGTACGAGCCCGACACGGAGGCGCTGGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCCGTGACCCTCGGCGCCGAGGACGCCGGCGAGCGCCCCCGCCGCCGCAACGTGCGCATCTCCTCCGACCCGCAGACGGTGGCGGCGCGGCAGCGGCGGGAGCGCATCAGCGAGCGCCTGCGCGTCCTGCAGAAGCTCGTCCCCGGCGGCGCCAAGATGGACACGGCCTCCATGCTCGACGAGGCCGCCAACTACCTCCGCTTCCTCAAGTCCCAGATCAGGGAGCTGCAAACCCTAGACCGCCGGAACTACCCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCACCAACCTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTCCCGGAAACCCTAGGATGC GGAGGAGGAGGAGTCGAGCAGCTGATCTAATCAATTTAGCTAGATAGATTGGAGACGACGACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCATGCAAAGCAACTGTTG CAATGTGTTGTCCAATGTGAGACCATCATATGATAGATTCATCATTGTTAGGCATGGTGATTTACTAGCTACGATCATATCGATGGAATCATC ] [-] EMBL CB662792 [ TGACCCTCGGCGCCGAGGACGCCGGCGAGCGCCCCCGCCGCCGCAACGTGCGCATCTCCTCCGACCCGCAGACGGTGGCGGCGCGGCAGCGGCGGGAGCGCATCAGCGAGCGCCTGCGCGTCCTGCAGAAGCTCGTCCCCGGCGGCGCCAAGATGGACACGGCCTCCATGCTCGACGAGGCCGCCAACTACCTCCGCTTCCTCAAGTCCCAGATCAGGGAGCTGCAAACCCTAGACCGCCGGAACTACCCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCACCAACCTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTCCCGGAAACCCTAGGATGC GGAGGAGGAGGAGTCGAGCAGCTGATCTAATCAATTTAGCTAGATAGATTGGAGACGACGACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCATGCAAAGCAACTGTTG CAATGTGTTGTCCAATGTGAGACCATCATATGATAGATTCATCATTGTTAGGCATGGTGATTAACTAGCTACGATCATATCGATGGAATCATCATGCATGCCATGGACCCTATTAGCTAGCTTTTTTTTTTTCTCTTCTCCTTTTTCTTCTTCTTCTCCTTGTCGTCATAATTTAGTTCTGATCAGTTTGATGATCATGTATGCATTGCATGTCCAGCCTACGTGCTTTATTTCCGAGCTAGAGATCGATTATATATCATCTATCAACAAAAAAAAAAG] [-] EMBL CB629361 [ TGACCCTCGGCGCCGAGGACGCCGGCGAGCGCCCCCGCCGCCGCAACGTGCGCATCTCCTCCGACCCGCAGACGGTGGCGGCGCGGCAGCGGCGGGAGCGCATCAGCGAGCGCCTGCGCGTCCTGCAGAAGCTCGTGCCCGGCGGCGCCAAGATGGACACGGCCTCCATGCTCGACGAGGCCGCCAACTACCTCCGCTTCCTCAAGTCCCAGATCAGGGAGCTGCAAACCCTAGACCGCCGGAACTACCCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCACCAACCTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTCCCGGAAACCCTAGGATGCGGAGGAGGAGGAGGAGTCGAGCAGCTGATCTAATCAATTTAGCTAGATAGATTGGAGA A GACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCATGCAAAGCAACTGTTG CAATGTGTTGTCCAATGTGAGACCATCATATGATAGATTCATCATTGTTAGGCATGGTGATTAACTAGCTACGATCATATCGATGGAATCATCATGCATGTCATGGACCCTATTAGCTAG TTTTTTTTTTCTCTTCTCTTTTTTCTTCTTCTTCTCCTTGTCGTCATAATTTAGTTCTGATCAGTTTGATGATCATGT ] [+] EMBL BQ908261 [ gTGC AACCCTAGACCGCCGGAACTACCCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCACCAACCTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTCCCGGAAACCCTAGGATGCGGAGGAGGAGGAGGAGTCGAGCAGCTGATCTAATCCATTTAGCTAGATAGATTGGA GACGACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCATGCCAAGC ACTGTTGCCAATGTGTTGTCCCATGTGAGACCATCATATGATAGATTCATCATTGTTAGGCATGGTGATTAACTAGCTACGATCATATCGATGGAATCATCATGCATGTCATGGACCCTATTAGCTAGC TTTTTTTTTTCTCTTCTCTTTTTTCTTCTTCTTCTCCTTGTCGTCATAATTTAGTTCTGATCAGTTTGATGATCATGTATGC TTGCATGTCCAGCCTACGTGCTTTATTTTCGAGCTAaaaaaa ] consensusID : consensus_8761#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [AGATGAGCCTCCTGCGTTGCCAAGATGGTCTGAGTGCTCTTCACGGCGACGCGTCCCCGACGTCGGCGGCGGCGGCGTTCCTTGACTCGGTGGATGTGTTGCCAGTGCCGGCCATCGCCGGCGCGACGCACGACGACGGCGGGCTCCTCGATAGGTTCGCGTTCCCGAACGTTGCCGAGACGACGACCGTGCAAGCCGCCGCGTCGAACACCGCCTTCTCCGGATACAGCAGCAACACCACCGGCGGCGGCAACATCTCCTCCGGCGAGTCGAACACCTACACGGAGGTGGCGTCGACGCCGTGCGCCGTGTCGACGACGACGACGACGACGGCTCTGCCCCCGTCGAAGCGGAAGCTACCAGAGAAGTACCCCGTCGTAGGCACATCAGTCAACGACGAAGACCACGACGACGTCGGAGACAGCCGCAGAGCGCCGGAGCACCAAGAGAGCGGCCGGGGGCAGCAGCAGCATCACGTTCGGCGGCGGCCGCCACGGCGCCGGTGCGGCGGCGGCGCTGCTCGGCCTCGGCCGCGGGTACGAGCCGGACACGGAGGCGATAGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCGGTCACCCTCGGCGGCGCCGCCTCCGCCTCCGACCCGTCATCGGCGGCGCCGCCGCCGCCCCAGCGCCGCAGCGTATGTCCCT] [-] EMBL CB966889 [AGATGAGCCTCCTGCGTTGCCAAGATGGTCTGAGTGCTCTTCACGGCGACGCGTCCCCGACGTCGGCGGCGGCGGCGTTCCTTGACTCGGTGGATGTGTTGCCAGTGCCGGCCATCGCCGGCGCGACGCACGACGACGGCGGGCTCCTCGATAGGTTCGCGTTCCCGAACGTTGCCGAGACGACGACCGTGCAAGCCGCCGCGTCGAACACCGCCTTCTCCGGATACAGCAGCAACACCACCGGCGGCGGCAACATCTCCTCCGGCGAGTCGAACACCTACACGGAGGTGGCGTCGACGCCGTGCGCCGTGTCGACGACGACGACGACGACGGCTCTGCCCCCGTCGAAGCGGAAGCTACCAGAGAAGTACCCCGTCGTAGGCACATCAGTCAACGACGAAGACCACGACGACGTCGGAGACAGCCGCAGAGCGCCGGAGCACCAAGAGAGCGGCCGGGGGCAGCAGCAGCATCACGTTCGGCGGCGGCCGCCACGGCGCCGGTGCGGCGGCGGCGCTGCTCGGCCTCGGCCGCGGGTACGAGCCGGACACGGAGGCGATAGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCGGTCACCCTCGGCGGCGCCGCCTCCGCCTCCGACCCGTCATCGGCGGCGCCGCCGCCGCCCCAGCGCCGCAGCGTATGTCCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8761#0 ACCGCCGGCGCCGACGGCGGCATCCAGATCGCGTTCAGCACGAGCGCCCCGGCGTCGAAG 60 consensus_8761#1 ---AGATGAGCCTCCTGCGTTGCCAAGATGG---TCTGAGTGCTCTTCACGGCGACGCGT 54 * *** * *** * **** * ** * * * * ***** ** consensus_8761#0 CGGGCGAAGCCGTCGCTGAGCAGCAGCTCGTCGAGCATCAGCTTCGACGGCAGGGGCCCC 120 consensus_8761#1 CCC-CGACGTCGGCGGCG-GCGGCGTTCCTTGACTCGGTGGATGTGTTGCCAGTG---CC 109 * *** * ** ** * ** ** * * * * * * * *** * ** consensus_8761#0 GGCGGCAACTGCGGCGGCGGCGGCGGCGACGACCCACTGTACGAGCCCGACACGGAGGCG 180 consensus_8761#1 GGCCATCGCCGGCGCGACGC--ACGACGACGGCGGGCTC------CTCGATAGGTTCGCG 161 *** * * *** ** ** ***** * ** * *** * * *** consensus_8761#0 CTGGCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATGCGCCCCGTGACCCTCGGC 240 consensus_8761#1 TTCCCGAACGTTGCCGAGACGA-CGACCGTGCAA-GCCGCCGCGTCGAAC-ACCGCCTTC 218 * ** * ** **** ** * **** ** * ** *** * *** * * consensus_8761#0 GCCGAGGACGCCGGCGAGCGCCCCCGCCGCCGCAACGTGCGCATCTCCTCCGACCCGCAG 300 consensus_8761#1 TCCGGATACAGCAGCAACACCACCGGCGGCGGCAA------CATCTCCTCCGGCGAGTCG 272 *** ** * ** * * ** ** ** **** *********** * * * consensus_8761#0 ACGGTGGCGGCGCGGCAGCGGCGGGAGCGCATCAGCGAGCGCCTGCGCGTCCTGCAGAAG 360 consensus_8761#1 A--ACACCTACACGGAGGTGGCG--------TCGACG-----CCGTGCGCCGTGTCGA-- 315 * * * *** * **** ** ** * * *** * ** ** consensus_8761#0 CTCGTCCCCGGCGGCGCCAAGATGGACACGGCCTCCATGCTCGACGAGGCCGCCAACTAC 420 consensus_8761#1 --------CGACGACGACGACGACGGCTCTGCCCCCGTCGAAGCGGAAGCTACCAGAGAA 367 ** ** ** * * * * * *** ** * * ** ** *** * consensus_8761#0 CTCCGCTTCCTCAAGTCCCAGATCAGGGAGCTGCAAACCCTA-GAC--CGCCGGAACTAC 477 consensus_8761#1 GTACCCCGTCGTAGG---CACATCAGTCAACGACGAAGACCACGACGACGTCGGAGACAG 424 * * * * * * ** ***** * * * ** * * *** ** **** * consensus_8761#0 CCGAACGCCGCCATGTCCATCAACACCGCCGCCGCCACCACCATGGCGACATCCAGTTCA 537 consensus_8761#1 CCGCAGAGCGCCG-GAGCACCAAGAGAGCGGCCGGGGGCAGCA--GCAGCATCACGTTCG 481 *** * **** * ** *** * ** **** ** ** ** **** **** consensus_8761#0 CCAAC--CTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTC--CCGGAAACCCT 593 consensus_8761#1 GCGGCGGCCGCCACGGCGCCGGTGCGGCGGCGGCGCTGCTCGGCCTCGGCCGCGGGTACG 541 * * * * ** * * ** ** * * *** * ** *** * consensus_8761#0 AG---GATGCGGAGGAGGAGGAGTCGAGCAGCTGATCTAATCAATTTAGCTAGATAGATT 650 consensus_8761#1 AGCCGGACACGGAGGCGATAGCG-CAGGTGAAGGAGATGATCTACCGCGCGGCGGCGATG 600 ** ** ****** * * * * * ** * *** * ** *** consensus_8761#0 GGAGACGACGACGACGACGACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCAT 710 consensus_8761#1 CGCCCGGTCACCCTCGGCGGCGCCGCCTCCGCCTCCGACCCGTCAT-CGGCGGCGCCGCC 659 * * * * ** ** ** ** * * ** * * ****** consensus_8761#0 GCAAAGCAACTGTTGCAATGTGTTGTCCAATGTGAGACCATCATATGATAGATTCATCAT 770 consensus_8761#1 GCCGCCCCAGCGCCGCAGCGTATGTCCCT------------------------------- 688 ** * * * *** ** * ** consensus_8761#0 TGTTAGGCATGGTGATTAACTAGCTACGATCATATCGATGGAATCATCATGCATGTCATG 830 consensus_8761#1 ------------------------------------------------------------ consensus_8761#0 GACCCTATTAGCTAGCTTTTTTTTTTCTCTTCTCTTTTTTCTTCTTCTTCTCCTTGTCGT 890 consensus_8761#1 ------------------------------------------------------------ consensus_8761#0 CATAATTTAGTTCTGATCAGTTTGATGATCATGTATGCATTGCATGTCCAGCCTACGTGC 950 consensus_8761#1 ------------------------------------------------------------ consensus_8761#0 TTTATTTCCGAGCTAGAGATCGATTATATATCATCTATCAACAAAAAAAAAAG 1003 consensus_8761#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||