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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8765#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1213 fasta sequence
[CCGTTTCGTTTCGTCTCCCCGCCGCGTTCTTAAATCCCAAGCCCAAGCCGCCCTCGCACTTCCTCTTCCCCCACCTCGCCGAGCTCCACGCCGCCGCCGCGGCGCCCCGTCTCCCACGCCGCTTCGCCCCGTCGTCTGCGGGGGAGCCGCTTGGAGTCAAGAGCAGCGACCGGTTCAAGTCTCGGGGGACGACTCGACTCCTCCACGCGGGTCGCGGACTCAGCGGTGCCGTACTCTGCCACCCGTGTGTGCCTGATATATGTGAGTTCGTGCCTTTTCCCTTGGGTGGCGGCAGCAGCAGCTGAGTCTCGTGGAGGAGGAGGTAGCGTCGTCGGTCGGCACGCGTATGGCCATGGACCTCGTCCGCCGGGAAGCGGACCGGGGCGCCGCGCCGGAGTTCGTGGCGGTCGACATCGGGGGCGAGGCGGAGACGGCCGGGGCAGAAGCGGAGCCCAAGAAGATGGAGTCCTCCTTCGCTGGGAAGGGCCTCGAGCGGGAGAGGAGCGGAGACGCCAATCCTTCTACCACAGGTGTGTTGGCCGTGTATGAGAAGCAGGTGGTGCCTGTGCACGTTGATGGTAGCCCAAAGGAGCAGTTCCACCCTTCAACACCAACAGCTGGTGGGGCAAAGCGCCGACGAACAGGCAGACGGGTCCCAGGGTGGCGTGACCCGAGGAAGATCCTTTTTGCCTTCGCAGCACTGTCTAGTGTGGGCACGTTGATCTTGCTCTACTTCACACTCTCAATGGGGAGGATGACAGGAGGTCAGGCTGATGG-CCAGTGATGCCATCTGACCGCACAGTTTATCACTTTTCATAGTGTTTCTGATGTTTGTAAAGAT-CAAGAAATGGACGGTTGGTTTCTATACTAGC-AGTGTTACATCACTGCTTAATTATATCACCATGATTTAGATGTTTGTACAAAAATATGTAGGCCGTATGTTAGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATACTTGAAGTGTAAATAAACACATGAACAGCAATTGGATGGACGACGGCGGTGGAACAAAAT-GGCAGGGAAAATTGGATAAAAGCATTGTCGCTGCAACAACGAAGTTACCTATTGTAGCTTTNGGGATTTTGACTGTNCAAATGAGGGTTTACACATGNAGGGGTAAATATTCTTTTGCGGNCCATTGACCCGCTCCTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK061223 [CCGTTTCGTTTCGTCTCCCCGCCGCGTTCTTAAATCCCAAGCCCAAGCCGCCCTCGCACTTCCTCTTCCCCCACCTCGCCGAGCTCCACGCCGCCGCCGCGGCGCCCCGTCTCCCACGCCGCTTCGCCCCGTCGTCTGCGGGGGAGCCGCTTGGAGTCAAGAGCAGCGACCGGTTCAAGTCTCGGGGGACGACTCGACTCCTCCACGCGGGTCGCGGACTCAGCGGTGCCGTACTCTGCCACCCGTGTGTGCCTGATATATGTGAGTTCGTGCCTTTTCCCTTGGGTGGCGGCAGCAGCAGCTGAGTCTCGTGGAGGAGGAGGTAGCGTCGTCGGTCGGCACGCGTATGGCCATGGACCTCGTCCGCCGGGAAGCGGACCGGGGCGCCGCGCCGGAGTTCGTGGCGGTCGACATCGGGGGCGAGGCGGAGACGGCCGGGGCAGAAGCGGAGCCCAAGAAGATGGAGTCCTCCTTCGCTGGGAAGGGCCTCGAGCGGGAGAGGAGCGGAGACGCCAATCCTTCTACCACAGGTGTGTTGGCCGTGTATGAGAAGCAGGTGGTGCCTGTGCACGTTGATGGTAGCCCAAAGGAGCAGTTCCACCCTTCAACACCAACAGCTGGTGGGGCAAAGCGCCGACGAACAGGCAGACGGGTCCCAGGGTGGCGTGACCCGAGGAAGATCCTTTTTGCCTTCGCAGCACTGTCTAGTGTGGGCACGTTGATCTTGCTCTACTTCACACTCTCAATGGGGAGGATGACAGGAGGTCAGGCTGATGG CCAGTGATGCCATCTGACCGCACAGTTTATCACTTTTCATAGTGTTTCTGATGTTTGTAAAGAT CAAGAAATGGACGGTTGGTTTCTATACTAGC AGTGTTACATCACTGCTTAATTATATCACCATGATTTAGATGTTTGTACAAAAATATGTAGGCCGTATGTTAGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATACTTGAAGTGTAAATAAACACATGAACAGCAATTGGATGGACGACG ]
[+] EMBL OSS12776A [ CTAGTGTGGGCACGTTGATCTTGCTCTACTTCACACTCTCAATGGGGAGGATGACAGGAGGTCAGGCTGATGG CCAGTGATGCCATCTGACCGCACAGTTTATCACTTTTCATAGTGTTTCTGATGTTTGTAAAGAT CAAGAAATGGACGGTTGGTTTCTATACTAGC AGTGTTACATCACTGCTTAATTATATCACCATGATTTAGATGTTTGTACAAAAATATGTAGGCCGTATGTTAGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATACTTGAAGTGTAAATAAACACATGAACAGCAATTGGATGGACGACGGCGGTGGGACAAAAT GGCAGGGAAAATTGGNTAAAAGCATTGTCGCTGCAACAACGNAGTTACCTATTGTAGCTTTNGGGATTTTGACTGTNCAAATGAGGGTTTACACATGNAGGGGTAAATATTCTTTTGCGGNCCATTGACCC ]
[+] EMBL OSS13231A [ CTAGTGTGGGCACGTTGATCTTGCTCTACTTCACACTCTCAATGGGGAGGATGACAGGAGGTCAGGCTGATGG CCAGTGATGCCATCTGACCGCACAGTTTATCACTTTTCATAGTGTTTCTGATGTTTGTAAAGAT CAAGAAATGGACGGTTGGTTTCTATACTAGC AGTGTTACATCACTGCTTAATTATATCACCATGATTTAGATGTTTGTACAAAAATATGTAGGCCGTATGTTAGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATACTTGAAGTGTAAATAAACACATGAACAGCAATTGGATGGACGACGGCGGTGGANCAAAATGGGCAGGGAAAATTGGATAAAAGCATTGTCGCTGCACCAACGAGGTTACCTATTGTAGCTTTGGGG ]
[+] EMBL AU088695 [ CTGATGGCCCAGTGATGCCTTCTGACCGCACAGTTTATCACTTTTCATAGTGTTTCTGATGTTTNTAAAGNTCCAAGAAATGGACGGTTGGTTTCTATACTAGCNAGTGTTACATCACTGCTTAATTATATCACCATGATTTAGATGTTTGTACAAAAATATGTAGGCCGTATGTTAGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATACTTGAAGTGTAAATAAACACATGAACAGCAATTGGATGGACGACGGCGNTGGAACAAAAT GGCAGGGAAAATTGGATAAAAGCATTGTCNCTGCAACAACGAAGTTACCTATTGTAGCTTT GGGATTTTGACTGTACAAATGAGGTTTTACACATGAAGAGATAAATATTCTTTTGCGGACCATTGAACCGCTCCTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8765#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[ANCCNNCCATGGGNTTTTCCCCAAGTNTCCNACGTTTGTAAAAANGACCGGNCCCAATNANNCCCNNNTNAAATNCAGTATTNNACCTANTNAGNGCNAAATTTGGGGTACNGGNNCCCCCCCCTCGNAGNTTCGTCCCCANNTCNTNCCGNNGCANTNTCCNAGTGTGGGCAACCGTNGATCTTGCTCTACTTCAACACTTCTCAATGGGGGAAGGATNACAGGNGGTCAGGCTGATGGGCCAGTGNTGCCCTTCTGACCTCTCAGTTTATCACCTTTATCATAGTGTTTCTTGATGTTTGTAAANNTCAAGAAATGNGACGNTTGGTTTACTATTACTNGCCAGTGTTAACATCACTGCTTAATTAATATCACCATGAATTTANTATGTTTGTAACAAAAATATGTAGGCCGTNTGTTNGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATNCTTGAAGTGTAAATATACACATGAACAGCAATTGGATGGACGACGGCGGTGGAACAAAATGGCAGGGAAAATTGAANAAAAAAATTNCCNCTNCCACAACGAAGTTACCTATTGTAGCTTTGGGATTTTGACTGTANAAATGAGGTTTTACACATGAAGAGATAAATATTCTTTTGCGGACCATTGAACCGCTCCTCCTAAAAAAAAAAAAAAAAAAAAAAAAGNAAAAAAA]
[+] EMBL AU032671 [ANCCNNCCATGGGNTTTTCCCCAAGTNTCCNACGTTTGTAAAAANGACCGGNCCCAATNANNCCCNNNTNAAATNCAGTATTNNACCTANTNAGNGCNAAATTTGGGGTACNGGNNCCCCCCCCTCGNAGNTTCGTCCCCANNTCNTNCCGNNGCANTNTCCNAGTGTGGGCAACCGTNGATCTTGCTCTACTTCAACACTTCTCAATGGGGGAAGGATNACAGGNGGTCAGGCTGATGGGCCAGTGNTGCCCTTCTGACCTCTCAGTTTATCACCTTTATCATAGTGTTTCTTGATGTTTGTAAANNTCAAGAAATGNGACGNTTGGTTTACTATTACTNGCCAGTGTTAACATCACTGCTTAATTAATATCACCATGAATTTANTATGTTTGTAACAAAAATATGTAGGCCGTNTGTTNGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATNCTTGAAGTGTAAATATACACATGAACAGCAATTGGATGGACGACGGCGGTGGAACAAAATGGCAGGGAAAATTGAANAAAAAAATTNCCNCTNCCACAACGAAGTTACCTATTGTAGCTTTGGGATTTTGACTGTANAAATGAGGTTTTACACATGAAGAGATAAATATTCTTTTGCGGACCATTGAACCGCTCCTCCTAAAAAAAAAAAAAAAAAAAAAAAAGNAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8765#0 CCGTTTCGTTTCGTCTCCCCGCCGCGTTCTTAAATCCCAAGCCCAAGCCGCCCTCGCACT 60
consensus_8765#1 ------------------------------------------------------------
consensus_8765#0 TCCTCTTCCCCCACCTCGCCGAGCTCCACGCCGCCGCCGCGGCGCCCCGTCTCCCACGCC 120
consensus_8765#1 ------------------------------------------------------------
consensus_8765#0 GCTTCGCCCCGTCGTCTGCGGGGGAGCCGCTTGGAGTCAAGAGCAGCGACCGGTTCAAGT 180
consensus_8765#1 ------------------------------------------------------------
consensus_8765#0 CTCGGGGGACGACTCGACTCCTCCACGCGGGTCGCGGACTCAGCGGTGCCGTACTCTGCC 240
consensus_8765#1 ------------------------------------------------------------
consensus_8765#0 ACCCGTGTGTGCCTGATATATGTGAGTTCGTGCCTTTTCCCTTGGGTGGCGGCAGCAGCA 300
consensus_8765#1 ------------------------------------------------------------
consensus_8765#0 GCTGAGTCTCGTGGAGGAGGAGGTAGCGTCGTCGGTCGGCACGCGTATGGCCATGGACCT 360
consensus_8765#1 ------------------------------------------------------------
consensus_8765#0 CGTCCGCCGGGAAGCGGACCGGGGCGCCGCGCCGGAGTTCGTGGCGGTCGACATCGGGGG 420
consensus_8765#1 ------------------------------------------------------------
consensus_8765#0 CGAGGCGGAGACGGCCGGGGCAGAAGCGGAGCCCAAGAAGATGGAGTCCTCCTTCGCTGG 480
consensus_8765#1 ------------------------------------------------------------
consensus_8765#0 GAAGGGCCTCGAGCGGGAGAGGAGCGGAGACGCCAATCCTTCTACCACAGGTGTGTTGGC 540
consensus_8765#1 ---------------------------------------------------------ANC 3
*
consensus_8765#0 CGTGTATGAGAAGCAGGTGGTGCCTGTGCACGTTGATGGTAGCCCAAAGGAGCAGTTCCA 600
consensus_8765#1 CNNCCATGGGN------TTTTCCCCAAGTNT-CCNACGTTTGTAAAAANGACCGGNCCCA 56
* *** * * * ** * * * * * *** ** * * ***
consensus_8765#0 CCCTTCAACACCAACAGCTGGTGGGGCAAAGCGCCGACGAACAGGCAGAC--GGGTCCCA 658
consensus_8765#1 AT----NANNCCCNNNTNAAATNCAGTATTNNACCTANTNAGNGCNAAATTTGGGGTACN 112
* ** * * * ** * * * * * *** *
consensus_8765#0 GGGTGGCGTGACCCGAGGAA--GATCCTTTTTGCCTTCGCAGCACTGTC-TAGTGTGGGC 715
consensus_8765#1 GGNNCCCCCCCCTCGNAGNTTCGTCCCCANNTCNTNCCGNNGCANTNTCCNAGTGTGGGC 172
** * * ** * * ** * ** *** * ** *********
consensus_8765#0 A--CGTTGATCTTGCTCTACTTCA-CACT-CTCAATGGGG--AGGATGACAGGAGGTCAG 769
consensus_8765#1 AACCGTNGATCTTGCTCTACTTCAACACTTCTCAATGGGGGAAGGATNACAGGNGGTCAG 232
* *** ***************** **** ********** ***** ***** ******
consensus_8765#0 GCTGATGG-CCAGTGATGCCAT-CTGACCGCACAGTTTATCACTTTT--CATAGTGTTTC 825
consensus_8765#1 GCTGATGGGCCAGTGNTGCCCTTCTGACCTCTCAGTTTATCACCTTTATCATAGTGTTTC 292
******** ****** **** * ****** * *********** *** ***********
consensus_8765#0 T-GATGTTTGTAAAGATCAAGAAATGG-ACGGTTGGTTT-CTAT-ACTAGC-AGTGTTA- 879
consensus_8765#1 TTGATGTTTGTAAANNTCAAGAAATGNGACGNTTGGTTTACTATTACTNGCCAGTGTTAA 352
* ************ ********** *** ******* **** *** ** *******
consensus_8765#0 CATCACTGCTTAATTA-TATCACCATGA-TTTAG-ATGTTTGTA-CAAAAATATGTAGGC 935
consensus_8765#1 CATCACTGCTTAATTAATATCACCATGAATTTANTATGTTTGTAACAAAAATATGTAGGC 412
**************** *********** **** ********* ***************
consensus_8765#0 CGTATGTTAGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATACTTGAAGTGTAAATA 995
consensus_8765#1 CGTNTGTTNGAGAGTTTTTAAGTGGCATGAGGTGATTGGTGAATNCTTGAAGTGTAAATA 472
*** **** *********************************** ***************
consensus_8765#0 AACACATGAACAGCAATTGGATGGACGACGGCGGTGGAACAAAATGGCAGGGAAAATTGG 1055
consensus_8765#1 TACACATGAACAGCAATTGGATGGACGACGGCGGTGGAACAAAATGGCAGGGAAAATTGA 532
**********************************************************
consensus_8765#0 ATAAAAGCATTGTCGCTGCAACAACGAAGTTACCTATTGTAGCTTTNGGGATTTTGACTG 1115
consensus_8765#1 ANAAAAAAATTNCCNCTNCCACAACGAAGTTACCTATTGTAGCTTTGGG-ATTTTGACTG 591
* **** *** * ** * ************************** ** **********
consensus_8765#0 TNCAAATGAGGGTTTACACATGNAGGGGTAAATATTCTTTTGCGGNCCATTGACCCGCTC 1175
consensus_8765#1 TANAAATGAGGTTTTACACATGAAGAGATAAATATTCTTTTGCGGACCATTGAACCGCTC 651
* ******** ********** ** * ***************** ******* ******
consensus_8765#0 CTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1213
consensus_8765#1 CTCCTAAAAAAAAAAAAAAAAAAAAAAAAGNAAAAAAA 689
***************************** *******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||