These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8768#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 837 fasta sequence [CGCAGCGACGAGCCGAGCCGCCGCGACGCCGCCGGCGAGCGCCTGCTCCGCCGCCGCCCGCCGCCGCAGATGGGGGACGAGCGCGTGAAGGCGGAGGCGCTGCAGATCCTGGGGCTGTTCCAGGCGCTCCCGCGCCTCGTCGTCTTCGACCTCGACTACACCCTCTGGCCCTTCTACTGCGAGTGCCGCTCCAAGAGGGAGTCGCCGAGCCTCTACCGGCACGCCAAGGGCATCATGTTCGCCCTCAGGGAGAAGGGGATCGACATGGCGATTGCGTCCCGCTCCCCCACCCCGGACATAGCCAAGGTGTTCATTGACAAGCTGGAGATCAAGTCCATGTTCGTTGCCCAGGAAATATTCTCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCTTACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATCGATATCAAAAATGGGAGTGACGAGCGTGCTGGTGGAGAACGGGGTGAATCTTGACATGTTTAAGTTGGGTCTGAGTAACTTTGCCACAAATGTTGCTGCCTCGAGCACAAGTAAAGATGAATAGCCTCATTGAACGACTAGAACCAACAGACAAGAAAAACATATAAATTTAAGTTAAGCATGCATTTCTTGTAATTTATATTGCCCTTGCTCATGTACGAGATGGAGTATTTGAGTACAGGATAACTTCTGAGAGCAAGTCTTTGCTTCATTTATGTGGATGTTACGATTCGATCGAATCAGATGAATTTGATTCGATCGGTGAATTGAGTCATACTGAATTAACTTAAAAGTATATTCAATTTTNGCC] [+] EMBL CF305157 [CGCAGCGACGAGCCGAGCCGCCGCGACGCCGCCGGCGAGCGCCTGCTCCGCCGCCGCCCGCCGCCGCAGATGGGGGACGAGCGCGTGAAGGCGGAGGCGCTGCAGATCCTGGGGCTGTTCCAGGCGCTCCCGCGCCTCGTCGTCTTCGACCTCGACTACACCCTCTGGCCCTTCTACTGCGAGTGCCGCTCCAAGAGGGAGTCGCCGAGCCTCTACCGGCACGCCAAGGGCATCATGTTCGCCCTCAGGGAGAAGGGGATCGACATGGCGATTGCGTCCCGCTCCCCCACCCCGGACATAGCCAAGGTGTTCATTGACAAGCTGGAGATCAAGTCCATGTTCGTTGCCCAGGAAATATTCTCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCTTACAA ] [+] EMBL AK063722 [ AGCGACGAGCCGAGCCGCCGCGACGCCGCCGGCGAGCGCCTGCTCCGCCGCCGCCCGCCGCCGCAGATGGGGGACGAGCGCGTGAAGGCGGAGGCGCTGCAGATCCTGGGGCTGTTCCAGGCGCTCCCGCGCCTCGTCGTCTTCGACCTCGACTACACCCTCTGGCCCTTCTACTGCGAGTGCCGCTCCAAGAGGGAGTCGCCGAGCCTCTACCGGCACGCCAAGGGCATCATGTTCGCCCTCAGGGAGAAGGGGATCGACATGGCGATTGCGTCCCGCTCCCCCACCCCGGACATAGCCAAGGTGTTCATTGACAAGCTGGAGATCAAGTCCATGTTCGTTGCCCAGGAAATATTCTCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCTTACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATCGATATCAAAAATGGGAGTGACGAGCGTGCTGGTGGAGAACGGGGTGAATCTTGACATGTTTAAGTTGGGTCTGAGTAACTTTGCCACAAATGTTGCTGCCTCGAGCACAAGTAAAGATGAATAGCCTCATTGAACGACTAGAACCAACAGACAAGAAAAACATATAAATTTAAGTTAAGCATGCATTTCTTGTAATTTATATTGCCCTTGCTCATGTACGAGATGGAGTATTTGAGTACAGGATAACTTCTGAGAGCAAGTCTTTGCTTCATTTATGTGGATGTTACGATTCGATCGAATCAGATGAATTTGATTCGATCGGTGAATTGAGTCATACTGAATTAACTTAAATGTATATTCAAT ] [-] EMBL CA761989 [ AAGGGGATCGACATGGCGATTGCGTCCCGCTCCCCCACCCCGGACATAGCCAAGGTGTTCATTGACAAGCTGGAGATCAAGTCCATGTTCGTTGCCCAGGAAATATTCTCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCTTACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATCGATATCAAAAATGGGAGTGACGAGCGTGCTGGTGGAGAACGGGGTGAATCTTGACATGTTTAAGTTGGGTCTGAGTAACTTTGCCACAAATGTTGCTGCCTCGAGCACAAGTAAAGATGAATAGCCTCATTGAACGACTAGAACCAACAGACAAGAAAAACATATAAATTTAAGTTAAGCATGCATTTCTTGTAATTTATATTGCCCTTGCTCATGTACGAGATGGAGTATTTGAGTACAGGATAACTTCTGAGAGCAAGTCTTTGCTTCATTTATGTGGATGTTACGATTCGATCGAATCAGATGAATTTGATTCGATCGGTGAATTGAGTCATACCGAATTAACTTAAAAaaaaa ] [+] EMBL CA767272 [ GGCGATTGCGTCCCGCTCCCCCACCCCGGACATAGCCAAGGTGTTCATTGACAAGCTGGAGATCAAGTCCATGTTCGTTGCCCAGGAAATATTCTCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCTTACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATTGATATCAAAAATGGGAGTGACGAGCGTGCTGGTGGAGAACGGGGTGAATCTTGACATGTTTAAGTTGGGTCTGAGTAACTTTGCCACAAATGTTGCTGCCTCGAGCACAAGTAAAGATGAATAGCCTCATTGAACGACTAGAACCAACAGACAAGAAAAACATATAAATTTAAGTTAAGCATGCATTTCTTGTAATTTATATTGCCCTTGCTCATGTACGAGATGGAGTATTTGAGTACAGGATAACTTCTGAGAGCAAGTCTTTGCTTCATTTATGNGGATGTTACNATTCGATCGAATCAGATGAATTTGATTCGATCGGTGAANTGAGTCATACTGAATTANCTTAAANGTATATTCATGTTTNGCC] consensusID : consensus_8768#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [TTCTCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCTTACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATCGATACTCCAAAATGGGAGTGACGAGCGTGCTGGTGGAGAACCGGGGTGAATCTTGACATGTTTAAGTTGGGTCTGAGTAACTTTGCCCTACAAATGTTGCTGCCCTCGAGCACAAGTAAAGATGTAATAGCCTCTATTGAACGACTAGAACCACAGACCAAGAAAAACATATAAATTTAAGTTAAGCATGCATTTCTNNCGTAATTTAGTATTGCCCTTGCTCATGTACCGAGATGGAGTATTTGAGTACCAGGATAACTTCTGAGAGCAAGTCTTTGCTTCATTTATGTGGATGTTACGATTCGATCGAATCAGATGAATTTGGATTCGATCGGTGAATTGAGTCATACTGAATTAACTTAAATGTATATTCCAAAAAAAAA] [+] EMBL BQ908962 [TTCTCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCTTACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATCGATACTCCAAAATGGGAGTGACGAGCGTGCTGGTGGAGAACCGGGGTGAATCTTGACATGTTTAAGTTGGGTCTGAGTAACTTTGCCCTACAAATGTTGCTGCCCTCGAGCACAAGTAAAGATGTAATAGCCTCTATTGAACGACTAGAACCACAGACCAAGAAAAACATATAAATTTAAGTTAAGCATGCATTTCTNNCGTAATTTAGTATTGCCCTTGCTCATGTACCGAGATGGAGTATTTGAGTACCAGGATAACTTCTGAGAGCAAGTCTTTGCTTCATTTATGTGGATGTTACGATTCGATCGAATCAGATGAATTTGGATTCGATCGGTGAATTGAGTCATACTGAATTAACTTAAATGTATATTCCAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8768#0 CGCAGCGACGAGCCGAGCCGCCGCGACGCCGCCGGCGAGCGCCTGCTCCGCCGCCGCCCG 60 consensus_8768#1 ------------------------------------------------------------ consensus_8768#0 CCGCCGCAGATGGGGGACGAGCGCGTGAAGGCGGAGGCGCTGCAGATCCTGGGGCTGTTC 120 consensus_8768#1 ------------------------------------------------------------ consensus_8768#0 CAGGCGCTCCCGCGCCTCGTCGTCTTCGACCTCGACTACACCCTCTGGCCCTTCTACTGC 180 consensus_8768#1 ------------------------------------------------------------ consensus_8768#0 GAGTGCCGCTCCAAGAGGGAGTCGCCGAGCCTCTACCGGCACGCCAAGGGCATCATGTTC 240 consensus_8768#1 ------------------------------------------------------------ consensus_8768#0 GCCCTCAGGGAGAAGGGGATCGACATGGCGATTGCGTCCCGCTCCCCCACCCCGGACATA 300 consensus_8768#1 ------------------------------------------------------------ consensus_8768#0 GCCAAGGTGTTCATTGACAAGCTGGAGATCAAGTCCATGTTCGTTGCCCAGGAAATATTC 360 consensus_8768#1 ---------------------------------------------------------TTC 3 *** consensus_8768#0 TCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCT 420 consensus_8768#1 TCCAGCTGGACTCACAAGACAGAGCATTTCCAAAAGATTCAGAGGAAGACTGGGATTCCT 63 ************************************************************ consensus_8768#0 TACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATCGATA-TCAAAAAT 479 consensus_8768#1 TACAAATCCATGCTTTTCTTTGATGACGAGGACAGAAATATTGAATCGATACTCCAAAAT 123 *************************************************** ** ***** consensus_8768#0 GGGAGTGACGAGCGTGCTGGTGGAGAAC-GGGGTGAATCTTGACATGTTTAAGTTGGGTC 538 consensus_8768#1 GGGAGTGACGAGCGTGCTGGTGGAGAACCGGGGTGAATCTTGACATGTTTAAGTTGGGTC 183 **************************** ******************************* consensus_8768#0 TGAGTAACTTTGCC--ACAAATGTTGCTGCC-TCGAGCACAAGTAAAGATG-AATAGCCT 594 consensus_8768#1 TGAGTAACTTTGCCCTACAAATGTTGCTGCCCTCGAGCACAAGTAAAGATGTAATAGCCT 243 ************** *************** ******************* ******** consensus_8768#0 C-ATTGAACGACTAGAACCAACAGACAAGAAAAACATATAAATTTAAGTTAAGCATGCAT 653 consensus_8768#1 CTATTGAACGACTAGAACCACAGACCAAGAAAAACATATAAATTTAAGTTAAGCATGCAT 303 * ****************** *********************************** consensus_8768#0 TTCTTG--TAATTTA-TATTGCCCTTGCTCATGTAC-GAGATGGAGTATTTGAGTAC-AG 708 consensus_8768#1 TTCTNNCGTAATTTAGTATTGCCCTTGCTCATGTACCGAGATGGAGTATTTGAGTACCAG 363 **** ******* ******************** ******************** ** consensus_8768#0 GATAACTTCTGAGAGCAAGTCTTTGCTTCATTTATGTGGATGTTACGATTCGATCGAATC 768 consensus_8768#1 GATAACTTCTGAGAGCAAGTCTTTGCTTCATTTATGTGGATGTTACGATTCGATCGAATC 423 ************************************************************ consensus_8768#0 AGATGAATTTG-ATTCGATCGGTGAATTGAGTCATACTGAATTAACTTAAAAGTATATTC 827 consensus_8768#1 AGATGAATTTGGATTCGATCGGTGAATTGAGTCATACTGAATTAACTTAAATGTATATTC 483 *********** *************************************** ******** consensus_8768#0 AATTTTNGCC 837 consensus_8768#1 CAAAAAAAAA 493 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||