These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_877#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence [GGTCTTTGCCTTGCTGTGGTGAGAGAGATCGATGGCGCTGAGAATNAGCATCGCGGCGATGTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACGCGGGCGGNGGNGGCGGCGTCGTGCCCGGCGACGCGCGGNACGCGGGGGCNACGCTNCAGGTTTCGCANGCTTTCGGGCCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCNTNGGCGGGGTTCCTNGCGGANCAAGCGGCGCGCAANGGTCG] [+] EMBL OSS11450A [GGTCTTTGCCTTGCTGTGGTGAGAGAGATCGATGGCGCTGAGAATNAGCATCGCGGCGATGTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACGCGGGCGGNGGNGGCGGCGTCGTGCCCGGCGACGCGCGGNACGCGGGGGCNACGCTNCAGGTTTCGCANGCTTTCGGGCCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCNTNGGCGGGGTTCCTNGCGGANCAAGCGGCGCGCAANGGTCG] consensusID : consensus_877#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [TGGTGAGAGAGATCGATGGCGCTGAGAATGAGCATCGCGGCGATGTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACGGTGCGGCGGCGGCGGCGTCGTGCCCGGCGACGNCNGGANCGCGGGGGCGACGCTGCAGGTGTCGCACGCGTTCGGGCCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCGTGGGCGGGGTTCCTGGCGGANCA] [+] EMBL C74566 [TGGTGAGAGAGATCGATGGCGCTGAGAATGAGCATCGCGGCGATGTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACGGTGCGGCGGCGGCGGCGTCGTGCCCGGCGACGNCNGGANCGCGGGGGCGACGCTGCAGGTGTCGCACGCGTTCGGGCCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCGTGGGCGGGGTTCCTGGCGGANCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_877#0 GGTCTTTGCCTTGCTGTGGTGAGAGAGATCGATGGCGCTGAGAATNAGCATCGCGGCGAT 60 consensus_877#1 ----------------TGGTGAGAGAGATCGATGGCGCTGAGAATGAGCATCGCGGCGAT 44 ***************************** ************** consensus_877#0 GTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACGCGGGCGGNGGNGGCGGC 120 consensus_877#1 GTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACG-GTGCGGCGGCGGCGGC 103 ******************************************* * **** ** ****** consensus_877#0 GTCGTGCCCGGCGACGCGCGGNACGCGGGGGCNACGCTNCAGGTTTCGCANGCTTTCGGG 180 consensus_877#1 GTCGTGCCCGGCGACGNCNGGANCGCGGGGGCGACGCTGCAGGTGTCGCACGCGTTCGGG 163 **************** ** ********* ***** ***** ***** ** ****** consensus_877#0 CCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCNTNGGCGGGGTTCCTNGCGGANC 240 consensus_877#1 CCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCGTGGGCGGGGTTCCTGGCGGANC 223 ************************************* * ************ ******* consensus_877#0 AAGCGGCGCGCAANGGTCG 259 consensus_877#1 A------------------ 224 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||