Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 877 cluster # 877       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_877#0 length = 259 sequences # 1  
consensus_877#1 length = 224 sequences # 1  

consensusID : consensus_877#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence
                              [GGTCTTTGCCTTGCTGTGGTGAGAGAGATCGATGGCGCTGAGAATNAGCATCGCGGCGATGTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACGCGGGCGGNGGNGGCGGCGTCGTGCCCGGCGACGCGCGGNACGCGGGGGCNACGCTNCAGGTTTCGCANGCTTTCGGGCCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCNTNGGCGGGGTTCCTNGCGGANCAAGCGGCGCGCAANGGTCG]

[+] EMBL OSS11450A            [GGTCTTTGCCTTGCTGTGGTGAGAGAGATCGATGGCGCTGAGAATNAGCATCGCGGCGATGTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACGCGGGCGGNGGNGGCGGCGTCGTGCCCGGCGACGCGCGGNACGCGGGGGCNACGCTNCAGGTTTCGCANGCTTTCGGGCCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCNTNGGCGGGGTTCCTNGCGGANCAAGCGGCGCGCAANGGTCG]


>consensus_877#0 GGTCTTTGCCTTGCTGTGGTGAGAGAGATCGATGGCGCTGAGAATNAGCATCGCGGCGAT GTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACGCGGGCGGNGGNGGCGGC GTCGTGCCCGGCGACGCGCGGNACGCGGGGGCNACGCTNCAGGTTTCGCANGCTTTCGGG CCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCNTNGGCGGGGTTCCTNGCGGANC AAGCGGCGCGCAANGGTCG



consensusID : consensus_877#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence
                              [TGGTGAGAGAGATCGATGGCGCTGAGAATGAGCATCGCGGCGATGTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACGGTGCGGCGGCGGCGGCGTCGTGCCCGGCGACGNCNGGANCGCGGGGGCGACGCTGCAGGTGTCGCACGCGTTCGGGCCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCGTGGGCGGGGTTCCTGGCGGANCA]

[+] EMBL C74566               [TGGTGAGAGAGATCGATGGCGCTGAGAATGAGCATCGCGGCGATGTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACGGTGCGGCGGCGGCGGCGTCGTGCCCGGCGACGNCNGGANCGCGGGGGCGACGCTGCAGGTGTCGCACGCGTTCGGGCCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCGTGGGCGGGGTTCCTGGCGGANCA]


>consensus_877#1 TGGTGAGAGAGATCGATGGCGCTGAGAATGAGCATCGCGGCGATGTCGGTGTTGGCGGTG GCGGCGGTGCTCGTTGTGGCCGGCACGGTGCGGCGGCGGCGGCGTCGTGCCCGGCGACGN CNGGANCGCGGGGGCGACGCTGCAGGTGTCGCACGCGTTCGGGCCGTGCTCGCCGCTGGG GGCGGAGTCGGCGGCGCGTCGTGGGCGGGGTTCCTGGCGGANCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_877#0      GGTCTTTGCCTTGCTGTGGTGAGAGAGATCGATGGCGCTGAGAATNAGCATCGCGGCGAT 60
consensus_877#1      ----------------TGGTGAGAGAGATCGATGGCGCTGAGAATGAGCATCGCGGCGAT 44
                                     ***************************** **************

consensus_877#0      GTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACGCGGGCGGNGGNGGCGGC 120
consensus_877#1      GTCGGTGTTGGCGGTGGCGGCGGTGCTCGTTGTGGCCGGCACG-GTGCGGCGGCGGCGGC 103
                     ******************************************* * **** ** ******

consensus_877#0      GTCGTGCCCGGCGACGCGCGGNACGCGGGGGCNACGCTNCAGGTTTCGCANGCTTTCGGG 180
consensus_877#1      GTCGTGCCCGGCGACGNCNGGANCGCGGGGGCGACGCTGCAGGTGTCGCACGCGTTCGGG 163
                     ****************   **  ********* ***** ***** ***** ** ******

consensus_877#0      CCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCNTNGGCGGGGTTCCTNGCGGANC 240
consensus_877#1      CCGTGCTCGCCGCTGGGGGCGGAGTCGGCGGCGCGTCGTGGGCGGGGTTCCTGGCGGANC 223
                     ************************************* * ************ *******

consensus_877#0      AAGCGGCGCGCAANGGTCG 259
consensus_877#1      A------------------ 224
                     *                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)