These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8773#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1436 fasta sequence [GACAGGGACGCTAACAAAGGGAAGACCAGTAGTTACTTCTATAGCTTCTTTAGCATATGAGGAGGCGGAGATTCTTCGTCTCGCCGCTGCAGTGGAGAAAACAGCATTGCATCCTATCGCAAATGCTATAATGGAGGAGGCCGAACTTCTCAAACTAGATATCCCAGCCACAAGTGGTCAACTTACAGAGCCTGGTTTTGGCTGTTTGGCAGAAGTAGATGGGTGCTTGGTTGCAGTAGGCACTTTGGACTGGGTCCACAATCGATTTGAGACCAAGGCATCGTCAACTGAACTGACAGATCTCGGAAATCATCTAGAGTTTGTGTCTTCCAGTGAGGCATCATCTAATCACTCAAAATCAATTTGCTTATGTTGGCCCGTGAAGGAGAAAGAATAATAGGTGCTATCGCTGTATCAGATGTTCTGCGTGATGATGCCCAAGCCACCCGGGACAGGCTTCAGCAGGAAGAAATCTTTGCATTTCTACTATCAGGAAACAGGAAAAAAGCAGTTGAAAGCATTGGGAGAACT-GTAGGGATCAGAAGTGAAAACATAAAGTCATCCTTAACTCCACATGAAAAGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATGGTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGAGTAGCTATGCGAACAAACTCAAAAGAGAGTGCTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTAGCCTGGGCTGTCGCATATAACATAGTAGCTATCCCTATTGCCGCCGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCTACAACTACATGGATCATTTCAGAGTACGGAAAAACAACGGGAAGATCTGAACTCCAGGCTGAATTAAATTTGCTCGCAGACCGCATCAAATTTGGTCCAGTTTGCATATCGCCGCATCCGTAGGATGGAATTGGCGAACTGCTTTGAGATCGCACACATGTACAGGATCATAGAGTGACCATCAACTCCGGCGCAAGCGTCCATACGTATAGATTTTAAGCAAGTTAGCCTTTTGTCAACTGTTCATATAGCATACAGCCTAAATCACCCAAGTGTTGTATTGCCACGGCCCCAAAACATTATCATGGGGGACTAAAAGTTATTAGAGCTTGATTTTTTTTCATTGAAAAGTTATTAGAGCAACGATGGTACAGTTTACATAGCTGCTATCCGACACGAGTGTACTCGATGTATTTGATAAAGAATAGTAACAGTCAGTTCATATTTAAGCGAAAAAAAACAAAAAAGGGA] [+] EMBL BI118698 [GACAGGGACGCTAACAAAGGGAAGACCAGTAGTTACTTCTATAGCTTCTTTAGCATATGAGGAGGCGGAGATTCTTCGTCTCGCCGCTGCAGTGGAGAAAACAGCATTGCATCCTATCGCAAATGCTATAATGGAGGAGGCCGAACTTCTCAAACTAGATATCCCAGCCACAAGTGGTCAACTTACAGAGCCTGGTTTTGGCTGTTTGGCAGAAGTAGATGGGTGCTTGGTTGCAGTAGGCACTTTGGACTGGGTCCACAATCGATTTGAGACCAAGGCATCGTCAACTGAACTGACAGATCTCGGAAATCATCTAGAGTTTGTGTCTTCCAGTGAGGCATCATCTAATCACTCAAAATCAATTTGCTTATGTTGGCCCGTGAAGGAGAAAGAATAATAGGTGCTATCGCTGTATCAGATGTTCTGCGTGATGATGCCCAAGCCACCCGGGACAGGCTTCAGCAGGAAGAAATCTTTGCATTTCTACTATCAGGAAACAGGAAAAAAACAGTTGAAAGCATTTGGAGAACTGGAAGGGATCAGAAATGGAAAC TTAAGTCATCCTTACTTCCACATGAAAAGGCAGGCATTATAATTGCATTGCAAGGAGAGGGACGTCGGG TGCAATGGTTGGGGACGGAATAAATGATGCACCATCTTTAGCAGCTG TGATGTGGGAGTAGCTATGCGAACAAACTCAAAAGAGAGTGCTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTAGCCTGGGCTGTCGCATATAACATAGTAGCTATCCCTATTGCCGCCGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCTACAACTACATGGATCATTTCAGAGTACGGAAAAACAACGGGAAGATCTGAACTCCAGGCTGAATTAAATTTGCTCGCAGACCGCATCAAATTTGGTCCAGTTTGCATATCGCCGCATCCGTAGGATGGAATTGGCGAACTGCTTTGAGATC ] [-] EMBL CB627958 [ AAGAAGCAGTTGAAAGCATTGGGAGAACT GTAGGGATCAGAAGTGAAAACATAAAGTCATCCTTAACTCCACATGAAAAGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATGGTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGAGTAGCTATGCGAACAAACTCAAAAGAGAGTGCTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTAGCCTGGGCTGTCGCATATAACATAGTAGCTATCCCTATTGCCGCCGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCTACAACTACATGGATCATTTCAGAGTACGGAAAAACAACGGGAAGATCTGAACTCCAGGCTGAATTAAATTTGCTCGCAGACCGCATCAAATTTGGTCCAGTTTGCATATCGCCGCATCCGTAGGATGGAATTGGCGAACTGCTTTGAGATCGCACACATGTACAGGATCATAGAGTGACCATCAACTCCGGCGCAAGCGTCCATACGTATAGATTTTAAGCAAGTTAGCCTTTTGTCAACTGTTCATATAGCATACAGCCTAAATCACCCAAGTGTTGTATTGCCACGGCCCCAAAACATTATCATGGGGGACTAAAAGTTATTAGAGCTTGATTTTTTTTCATTGAAAAGTTATTAGAGCAACGATGGTACAGTTTAC ] [-] EMBL CB659141 [ AAGCAGTTGAAAGCATTGGGAGAACT GTAGGGATCAGAAGTGAAAACATAAAGTCATCCTTAACTCCACATGAAAAGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATGGTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGAGTAGCTATGCGAACAAACTCAAAAGAGAGTGCTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTAGCCTGGGCTGTCGCATATAACATAGTAGCTATCCCTATTGCCGCCGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCTACAACTACATGGATCATTTCAGAGTACGGAAAAACAACGGGAAGATCTGAACTCCAGGCTGAATTAAATTTGCTCGCAGACCGCATCAAATTTGGTCCAGTTTGCATATCGCCGCATCCGTAGGATGGAATTGGCGAACTGCTTTGAGATCGCACACATGTACAGGATCATAGAGTGACCATCAACTCCGGCGCAAGCGTCCATACGTATAGATTTTAAGCAAGTTAGCCTTTTGTCAACTGTTCATATAGCATACAGCCTAAATCACCCAAGTGTTGTATTGCCACGGCCCCAAAACATTATCATGGGGGACTAAAAGTTATTAGAGCTTGATTTTTTTTCATTGAAAAGTTATTAGAGCAACGATGGTAC ] [-] EMBL CB677305 [ CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTTTCAGGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTAGCCTGGGCTGTCGCATATAACATAGTAGCTATCCCTATTGCCGCCGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTTTATCAGGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCTACAACTACATGGATCATTTCAGAGTACGGAAAAACAACGGGAAGATCTGAACTCCAGGCTGAATTAAATTTGCTCGCAGACCGCATCAAATTTGGTCCAGTTTGCATATCGCCGCATCCGTAGGATGGAATTGGCGAACTGCTTTGAGATCGCACACATGTACAGGATCATAGAGTGACCATCAACTCCGGCGCAAGCGTCCATACGTATAGATTTTAAGCAAGTTAGCCTTTTGTCAACTGTTCATATAGCATACAGCCTAAATCACCCAAGTGTTGTATTGCCACGGCCCCAAAACATTATCATGGGGGACTAAAAGTTATTAGAGCTTGATTTTTTTTCATTGAAAAGTTATTAGAGCAACGATGGTACAGTTTACATAGCTGCTATCCGACACGAGTGTACTCGATGTATTTGATAAAGAATAGTAACAGTCAGTTCATATTTAAGCGAAAAAAAACAAAAAAGGGA] consensusID : consensus_8773#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [TGGNGAACAAGTNAAACAGCTCTGGTGAAANTGCTGCCTCTGACCCNGCTTCACTTGTTCTATTAGGAAANANACTTTCTCACGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTACCTGGGCTGTCGCATATAACATAGTANCTATCCCTATTGCCCCCNGGGTGTTGCTGCCTCAATTTGATTTCNCCATGACACCATCTCTATCANAATTACGGAAAAACAACGGGAAGATCTGAACTCCANCTGAATTAAATTTGCTCNCAAACNCCNTCNAATTTTGTCCANTTTGCATATCCCCNCATCCCTNTNATGGAATTGGCTAACTGCTTTGAAATCCNCACATNTTCCNGGATCNTNNAATTNACCATCNACTCCNGCGCAANCNTTCATACNTN] [+] EMBL BE228587 [TGGNGAACAAGTNAAACAGCTCTGGTGAAANTGCTGCCTCTGACCCNGCTTCACTTGTTCTATTAGGAAANANACTTTCTCACGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTACCTGGGCTGTCGCATATAACATAGTANCTATCCCTATTGCCCCCNGGGTGTTGCTGCCTCAATTTGATTTCNCCATGACACCATCTCTATCANAATTACGGAAAAACAACGGGAAGATCTGAACTCCANCTGAATTAAATTTGCTCNCAAACNCCNTCNAATTTTGTCCANTTTGCATATCCCCNCATCCCTNTNATGGAATTGGCTAACTGCTTTGAAATCCNCACATNTTCCNGGATCNTNNAATTNACCATCNACTCCNGCGCAANCNTTCATACNTN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8773#0 GACAGGGACGCTAACAAAGGGAAGACCAGTAGTTACTTCTATAGCTTCTTTAGCATATGA 60 consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 GGAGGCGGAGATTCTTCGTCTCGCCGCTGCAGTGGAGAAAACAGCATTGCATCCTATCGC 120 consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 AAATGCTATAATGGAGGAGGCCGAACTTCTCAAACTAGATATCCCAGCCACAAGTGGTCA 180 consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 ACTTACAGAGCCTGGTTTTGGCTGTTTGGCAGAAGTAGATGGGTGCTTGGTTGCAGTAGG 240 consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 CACTTTGGACTGGGTCCACAATCGATTTGAGACCAAGGCATCGTCAACTGAACTGACAGA 300 consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 TCTCGGAAATCATCTAGAGTTTGTGTCTTCCAGTGAGGCATCATCTAATCACTCAAAATC 360 consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 AATTTGCTTATGTTGGCCCGTGAAGGAGAAAGAATAATAGGTGCTATCGCTGTATCAGAT 420 consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 GTTCTGCGTGATGATGCCCAAGCCACCCGGGACAGGCTTCAGCAGGAAGAAATCTTTGCA 480 consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 TTTCTACTATCAGGAAACAGGAAAAAAGCAGTTGAAAGCATTGGGAGAACTGTAGGGATC 540 consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 AGAAGTGAAAACATAAAGTCATCCTTAACTCCACATGAAAAGGCAGGCATTATAACTGCA 600 consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 TTGCAAGGAGAGGGACGTCGGGTTGCAATGGTTGGGGATGGAATAAATGATGCACCATCT 660 consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 TTAGCAGCTGCTGATGTGGGAGTAGCTATGCGAACAAACTCAAAAGAGAGTGCTGCCTCT 720 consensus_8773#1 -------------------TGGNGAACAAGTNAAACAGCTCTGGTGAAANTGCTGCCTCT 41 * * * ** * *** ** * ********** consensus_8773#0 GACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGGTAATGGATGCTTTATCA 780 consensus_8773#1 GACCCNGCTTCACTTGTTCTATTAGGAAANANACTTTCTCACGTAATGGATGCTTTATCA 101 *** * ****** **************** * ********* ****************** consensus_8773#0 CTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTAGCCTGGGCTGTCGCATATAAC 840 consensus_8773#1 CTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTA-CCTGGGCTGTCGCATATAAC 160 *************************************** ******************** consensus_8773#0 ATAGTAGCTATCCCTATTGCCGCCGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACA 900 consensus_8773#1 ATAGTANCTATCCCTATTGCCCCCNGGGTGTTGCTGCCTCAATTTGATTTCNCCATGACA 220 ****** ************** ** ************************** ******** consensus_8773#0 CCATCTCTATCAGGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTA 960 consensus_8773#1 CCATCTCTATCANA---------------------------------------------- 234 ************ consensus_8773#0 CTTCTACAACTACATGGATCATTTCAGAGTACGGAAAAACAACGGGAAGATCTGAACTCC 1020 consensus_8773#1 ---------------------------ATTACGGAAAAACAACGGGAAGATCTGAACTCC 267 * ******************************* consensus_8773#0 AGGCTGAATTAAATTTGCTCGCAGACCGCATCAAATTTGGTCCAGTTTGCATATCGCCGC 1080 consensus_8773#1 AN-CTGAATTAAATTTGCTCNCAAACNCCNTCNAATTTTGTCCANTTTGCATATCCCCNC 326 * ***************** ** ** * ** ***** ***** ********** ** * consensus_8773#0 ATCCGTAGGATGGAATTGGCGAACTGCTTTGAGATCGCACACATGTAC-AGGATCATAGA 1139 consensus_8773#1 ATCCCTNTNATGGAATTGGCTAACTGCTTTGAAATC-CNCACATNTTCCNGGATCNTNNA 385 **** * *********** *********** *** * ***** * * ***** * * consensus_8773#0 GT-GACCATCAACTCCGGCGCAAGCGTCCATACGTATAGATTTTAAGCAAGTTAGCCTTT 1198 consensus_8773#1 ATTNACCATCNACTCCNGCGCAANCNTTCATACNTN------------------------ 421 * ****** ***** ****** * * ***** * consensus_8773#0 TGTCAACTGTTCATATAGCATACAGCCTAAATCACCCAAGTGTTGTATTGCCACGGCCCC 1258 consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 AAAACATTATCATGGGGGACTAAAAGTTATTAGAGCTTGATTTTTTTTCATTGAAAAGTT 1318 consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 ATTAGAGCAACGATGGTACAGTTTACATAGCTGCTATCCGACACGAGTGTACTCGATGTA 1378 consensus_8773#1 ------------------------------------------------------------ consensus_8773#0 TTTGATAAAGAATAGTAACAGTCAGTTCATATTTAAGCGAAAAAAAACAAAAAAGGGA 1436 consensus_8773#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||