cluster # 8777

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Oryza sativa
cluster # 8777 cluster # 8777 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8777#0 length = 730 sequences # 4

consensus_8777#1 length = 391 sequences # 1

consensusID : consensus_8777#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 730
fasta sequence

                              [CTTCGTCTCCGCCTCTTCCTCTCCCTCAACTGCGCAAGCGCTTCTCCCTCCTTGCGCGGTAGCCGGCGCCAATCCCTACCCTCGTGGCGGCTGGCTCTGCTCCCTCTCCCTGCGCAGCAGCCGACGCCTCTCCAGCCCTCTCCCCTATGCAGCGAGTCCTCTCCTCTCTCATGAGGTGGAGGAGGAGGCGTGGGGTGGCGGGGGCAAGATCCAACGACCCCCAAGCTTGGGACCAGCACAGCGTTAAGGGAGATGGCGAGGACGGTGCGACGACGG-CAAGGACAGTGGCTCCACGAAGGAGGAGGTGCAGGGCGGCGGCGGCCAGATCCAAGTGAATTTTTTGCTGCCTCCCGCTTTCACTCACCCTTGCTTCTGTTACTCCATCTGTAAGCGATGTCTTTGCCTTAGCAGCCAGATTTGATGTCGTCCTTTGGAAATTTGTGGCCTTCTTTATGGGGATCTTTGGTGCTTGCCCGATTTGCTCTCCATGGGTGTTTTGGAGATGCTTGGGCTGATTCTGTCACCACTGGATTTGCCGCATCGTGACTCGTGAGCTGCTGCATCTTAAGGCGAAAGATTGGTTTCTTTAGGGAGTTGAGATTTGTTTGTGTGTATCTGCTTCCACCTTTATAATTTTTGTAGCGTCAATCTTCATCGTATTCAATTATGTGTCCTTGTGAAGCAAAACATTGAATGAAAAACTGATTTTCTGGGGTTGGTTTTGAAAAAA]

[+] EMBL AK059180             [CTTCGTCTCCGCCTCTTCCTCTCCCTCAACTGCGCAAGCGCTTCTCCCTCCTTGCGCGGTAGCCGGCGCCAATCCCTACCCTCGTGGCGGCTGGCTCTGCTCCCTCTCCCTGCGCAGCAGCCGACGCCTCTCCAGCCCTCTCCCCTATGCAGCGAGTCCTCTCCTCTCTCATGAGGTGGAGGAGGAGGCGTGGGGTGGCGGGGGCAAGATCCAACGACCCCCAAGCTTGGGACCAGCACAGCGTTAAGGGAGATGGCGAGGACGGTGCGACGACGG CAAGGACAGTGGCTCCACGAAGGAGGAGGTGCAGGGCGGCGGCGGCCAGATCCAAGTGAATTTTTTGCTGCCTCCCGCTTTCACTCACCCTTGCTTCTGTTACTCCATCTGTAAGCGATGTCTTTGCCTTAGCAGCCAGATTTGATGTCGTCCTTTGGAAATTTGTGGCCTTCTTTATGGGGATCTTTGGTGCTTGCCCGATTTGCTCTCCATGGGTGTTTTGGAGATGCTTGGGCTGATTCTGTCACCACTGGATTTGCCGCATCGTGACTCGTGAGCTGCTGCATCTTAAGGCGAAAGATTGGTTTCTTTAGGGAGTTGAGATTTGTTTGTGTGTATCTGCTTCCACCTTTATAATTTTTGTAGCGTCAATCTTCATCGTATTCAATTATGTGTCCTTGTGAAGCAAAACATTGAATGAAAAACTGATTTTCTGGG                ]
[+] EMBL CF334848             [                  CTCTCCCTCAACTGCGCAAGCGCTTCTCCCTCCTTGCGCGGTAGCCGGCGCCAATCCCTACCCTCGTGGCGGCTGGCTCTGCTCCCTCTCCCTGCGCAGCAGCCGACGCCTCTCCAGCCCTCTCCCCTATGCAGCGAGTCCTCTCCTCTCTCATGAGGTGGAGGAGGAGGCGTGGGGTGGCGGGGGCAAGATCCAACGACCCCCAAGCTTGGGACCAGCACAGCGTTAAGGGAGATGGCGAGGACGGTGCGACGACGG CAAGGACAGTGGCTCCACGAAGGAGGAGGTGCAGGGCGGCGGCGGCCAGATCCAAGTGAATTTTTTGCTGCCTCCCGCTTTCACTCACCCTTGCTTCTGTTACTCCATCTGTAAGCGATGTCTTTGCCTTAGCAGCCAGATTTGATGTCGTCCTTTGGAAATTTGTGGCCTTCTTTATGGGGATCTTTGGTGCTTGCCCGATTTGCTCT CATGGGTGTTTTGGAGATGCTTGGGCTGATTCTGTCACCACTGGATTTGCCGCATCGTGACTCGTGAGCTGCTGCATCTTAAGGCGAAAG                                                                                                                                                          ]
[+] EMBL AK099045             [                    CTCCCTCAACTGCGCAAGCGCTTCTCCCTCCTTGCGCGGTAGCCGGCGCCAATCCCTACCCTCGTGGCGGCTGGCTCTGCTCCCTCTCCCTGCGCAGCAGCCGACGCCTCTCCAGCCCTCTCCCCTATGCAGCGAGTCCTCTCCTCTCTCATGAGGTGGAGGAGGAGGCGTGGGGTGGCGGGGGCAAGATCCAACGACCCCCAAGCTTGGGACCAGCACAGCGTTAAGGGAGATGGCGAGGACGGTGCGACGACGG CAAGGACAGTGGCTCCACGAAGGAGGAGGTGCAGGGCGGCGGCGGCCAGATCCAAGTGAATTTTTTGCTGCCTCCCGCTTTCACTCACCCTTGCTTCTGTTACTCCATCTGTAAGCGATGTCTTTGCCTTAGCAGCCAGATTTGATGTCGTCCTTTGGAAATTTGTGGCCTTCTTTATGGGGATCTTTGGTGCTTGCCCGATTTGCTCTCCATGGGTGTTTTGGAGATGCTTGGGCTGATTCTGTCACCACTGGATTTGCCGCATCGTGACTCGTGAGCTGCTGCATCTTAAGGCGAAAGATTGGTTTCTTTAGGGAGTTGAGATTTGTTTGTGTGTATCTGCTTCCACCTTTATAATTTTTGTAGCGTCAATCTTCATCGTATTTAATTATGTGTCCTTGTGAAGCAAAACATTGAATGAAAAACTGATTTTCTGGG                ]
[-] EMBL CF334849             [                                                                                                                                                                                                                                             ACAGCGTTAAGGGAGATGGCGAGGACGGTGCGACGACGGCCAAGGACAGTGGCTCCACGAAGGAGGAGGTGCAGGGCGGCGGCGGCCAGATCCAAATGAATTTTTTGCTGCCTCCCGCTTTCACTCACCCTTGCTTCTGTTACTCCATCTGTAAGCGATGTCTTTGCCTTAGCAGCCAGATTTGATGTCGTCCTTTGGAAATTTGTGGCCTTCTTTATGGGGATCTTTGGTGCTTGCCCGATTTGCTCTCCATGGGTGTTTTGGAGATGCTTGGGCTGATTCTGTCACCACTGGATTTGCCGCATCGTGACTCGTGAGCTGCTGCATCTTAAGGCGAAAGATTGGTTTCTTTAGGGAGTTGAGATTTGTTTGTGTGTATCTGCTTCCACCTTTATAATTTTTGTAGCGTCAATCTTCATCGTATTCAATTATGTGTCCTTGTGAAGCAAAACATTGAATGAAAAACTGATTTTCTGGGGTTGGTTTTGAAAAAA]




>consensus_8777#0
CTTCGTCTCCGCCTCTTCCTCTCCCTCAACTGCGCAAGCGCTTCTCCCTCCTTGCGCGGT
AGCCGGCGCCAATCCCTACCCTCGTGGCGGCTGGCTCTGCTCCCTCTCCCTGCGCAGCAG
CCGACGCCTCTCCAGCCCTCTCCCCTATGCAGCGAGTCCTCTCCTCTCTCATGAGGTGGA
GGAGGAGGCGTGGGGTGGCGGGGGCAAGATCCAACGACCCCCAAGCTTGGGACCAGCACA
GCGTTAAGGGAGATGGCGAGGACGGTGCGACGACGGCAAGGACAGTGGCTCCACGAAGGA
GGAGGTGCAGGGCGGCGGCGGCCAGATCCAAGTGAATTTTTTGCTGCCTCCCGCTTTCAC
TCACCCTTGCTTCTGTTACTCCATCTGTAAGCGATGTCTTTGCCTTAGCAGCCAGATTTG
ATGTCGTCCTTTGGAAATTTGTGGCCTTCTTTATGGGGATCTTTGGTGCTTGCCCGATTT
GCTCTCCATGGGTGTTTTGGAGATGCTTGGGCTGATTCTGTCACCACTGGATTTGCCGCA
TCGTGACTCGTGAGCTGCTGCATCTTAAGGCGAAAGATTGGTTTCTTTAGGGAGTTGAGA
TTTGTTTGTGTGTATCTGCTTCCACCTTTATAATTTTTGTAGCGTCAATCTTCATCGTAT
TCAATTATGTGTCCTTGTGAAGCAAAACATTGAATGAAAAACTGATTTTCTGGGGTTGGT
TTTGAAAAAA

consensusID : consensus_8777#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [GTCCTCTCCTCTCTATGAGGTGGAGGAGGAGGCGTGGGGTGGCGGGGGCAAGATCCAACGACCCCCAAGCTTGGGACCAGCACAGCGTTAAGGGAGATGGCGAGGACGGTGCGACGACGGCAAGGACAGTGGCTCCACGAAGGAGGAGGTGCAGGGCGGCGGCGGCCAGATCCAAGTGAATTTTTTGCTGCCTCCCGCTTTCACTCACCCTTGCTTCTGTTACTCCATCTGTAAGCGATGTCTTTGCCTTAGCAGCCAGATTTGATGTCGTCCTTTGGAAATTTGTGGCCTTCTTTATGGGGATCTTTGGTGCTTGCCCGATTTGCTCTCCATGGGTGTTTTGGAGATGCTTGGGCTGATTCTGTCAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF298804             [GTCCTCTCCTCTCTATGAGGTGGAGGAGGAGGCGTGGGGTGGCGGGGGCAAGATCCAACGACCCCCAAGCTTGGGACCAGCACAGCGTTAAGGGAGATGGCGAGGACGGTGCGACGACGGCAAGGACAGTGGCTCCACGAAGGAGGAGGTGCAGGGCGGCGGCGGCCAGATCCAAGTGAATTTTTTGCTGCCTCCCGCTTTCACTCACCCTTGCTTCTGTTACTCCATCTGTAAGCGATGTCTTTGCCTTAGCAGCCAGATTTGATGTCGTCCTTTGGAAATTTGTGGCCTTCTTTATGGGGATCTTTGGTGCTTGCCCGATTTGCTCTCCATGGGTGTTTTGGAGATGCTTGGGCTGATTCTGTCAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8777#1
GTCCTCTCCTCTCTATGAGGTGGAGGAGGAGGCGTGGGGTGGCGGGGGCAAGATCCAACG
ACCCCCAAGCTTGGGACCAGCACAGCGTTAAGGGAGATGGCGAGGACGGTGCGACGACGG
CAAGGACAGTGGCTCCACGAAGGAGGAGGTGCAGGGCGGCGGCGGCCAGATCCAAGTGAA
TTTTTTGCTGCCTCCCGCTTTCACTCACCCTTGCTTCTGTTACTCCATCTGTAAGCGATG
TCTTTGCCTTAGCAGCCAGATTTGATGTCGTCCTTTGGAAATTTGTGGCCTTCTTTATGG
GGATCTTTGGTGCTTGCCCGATTTGCTCTCCATGGGTGTTTTGGAGATGCTTGGGCTGAT
TCTGTCAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8777#0      CTTCGTCTCCGCCTCTTCCTCTCCCTCAACTGCGCAAGCGCTTCTCCCTCCTTGCGCGGT 60
consensus_8777#1      ------------------------------------------------------------
                                                                                  

consensus_8777#0      AGCCGGCGCCAATCCCTACCCTCGTGGCGGCTGGCTCTGCTCCCTCTCCCTGCGCAGCAG 120
consensus_8777#1      ------------------------------------------------------------
                                                                                  

consensus_8777#0      CCGACGCCTCTCCAGCCCTCTCCCCTATGCAGCGAGTCCTCTCCTCTCTCATGAGGTGGA 180
consensus_8777#1      -----------------------------------GTCCTCTCCTCTCT-ATGAGGTGGA 24
                                                         ************** **********

consensus_8777#0      GGAGGAGGCGTGGGGTGGCGGGGGCAAGATCCAACGACCCCCAAGCTTGGGACCAGCACA 240
consensus_8777#1      GGAGGAGGCGTGGGGTGGCGGGGGCAAGATCCAACGACCCCCAAGCTTGGGACCAGCACA 84
                      ************************************************************

consensus_8777#0      GCGTTAAGGGAGATGGCGAGGACGGTGCGACGACGGCAAGGACAGTGGCTCCACGAAGGA 300
consensus_8777#1      GCGTTAAGGGAGATGGCGAGGACGGTGCGACGACGGCAAGGACAGTGGCTCCACGAAGGA 144
                      ************************************************************

consensus_8777#0      GGAGGTGCAGGGCGGCGGCGGCCAGATCCAAGTGAATTTTTTGCTGCCTCCCGCTTTCAC 360
consensus_8777#1      GGAGGTGCAGGGCGGCGGCGGCCAGATCCAAGTGAATTTTTTGCTGCCTCCCGCTTTCAC 204
                      ************************************************************

consensus_8777#0      TCACCCTTGCTTCTGTTACTCCATCTGTAAGCGATGTCTTTGCCTTAGCAGCCAGATTTG 420
consensus_8777#1      TCACCCTTGCTTCTGTTACTCCATCTGTAAGCGATGTCTTTGCCTTAGCAGCCAGATTTG 264
                      ************************************************************

consensus_8777#0      ATGTCGTCCTTTGGAAATTTGTGGCCTTCTTTATGGGGATCTTTGGTGCTTGCCCGATTT 480
consensus_8777#1      ATGTCGTCCTTTGGAAATTTGTGGCCTTCTTTATGGGGATCTTTGGTGCTTGCCCGATTT 324
                      ************************************************************

consensus_8777#0      GCTCTCCATGGGTGTTTTGGAGATGCTTGGGCTGATTCTGTCACCACTGGATTTGCCGCA 540
consensus_8777#1      GCTCTCCATGGGTGTTTTGGAGATGCTTGGGCTGATTCTGTCAAAAAAAAAAAAAAAAAA 384
                      *******************************************  *    *        *

consensus_8777#0      TCGTGACTCGTGAGCTGCTGCATCTTAAGGCGAAAGATTGGTTTCTTTAGGGAGTTGAGA 600
consensus_8777#1      AAAAAAA----------------------------------------------------- 391
                           *                                                      

consensus_8777#0      TTTGTTTGTGTGTATCTGCTTCCACCTTTATAATTTTTGTAGCGTCAATCTTCATCGTAT 660
consensus_8777#1      ------------------------------------------------------------
                                                                                  

consensus_8777#0      TCAATTATGTGTCCTTGTGAAGCAAAACATTGAATGAAAAACTGATTTTCTGGGGTTGGT 720
consensus_8777#1      ------------------------------------------------------------
                                                                                  

consensus_8777#0      TTTGAAAAAA 730
consensus_8777#1      ----------