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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8778#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1175 fasta sequence
[ACTGCACGAAAAAAAAAGTTTCGCTCCCCTCTCGCGGCGTATTTCCCTTCTCTCTCTCTCTCTTCCCCGTCGCGTGGCCGGCGGGAGGCGCGGCGAAGCGC-GCGGCGCCGGTGTCCAGGATTTTATGCATGGCAGAAAACATGAAATTTGCTGAAGGGTCGTACGTGGCCAACGAATTGGATATGCTCTCTCTGGCTTCATCAGTATATACTGCTCCATTATTTCAAACAGAATTTGATTCAGTTTATGTGCCTGAATATGGGGACGTGGGTAACAGTCAGGATGGCCTATTTCCTGGTTTATTCATTTCAGATGGCTTTGTTTTCCCTCCAAGCGAGCATGAGAATTTGCCAATAGAATCTGATCTTGATGGATCGAACAACAATAACAATGGTCAAGAAAGCAGCTGTGCTGGGAATATCTATGAGGGTTGTAATGAACCAGCCAAAGAAGTTGATGGCAGAAGTCTGTCTGTTAGTGGTGACCTG-CACTCTGCCAACGAAACTACTATCCCGAATTTAGAGCCACCTGAAATACGTGCTGAACAAGAGAAAGATAATGCAACCATCAAGTGTGATCTTCCATGTGAAGGATGGTTGAAAAGGAAATCAAATTGTCTTTCTCACCGTATGAAAGGAGTGACGACAGTCTGCACTATTGTGGCAGCTGGTGCTTTGATGGGCTTTGTTATAATAGGTCAGAGGTGGCAGCAGGACAAATTGCACCTTCATCATTTTNAGTTCAATATCGGCACTGAGGGCGTCAACAGAATCGTTGGAATATTCAGCCGTTGTAAGGATGCGCTTCCCAGTAGTCAGCAGCTCAAGTCTCTGCTTCCGACTCGCGTGCTCCCTCAAGAGCCAGTGAGTGCGTGAGTGGGACTCGCGTGGCAAATTTTGATGGCAGGCATCGCTATAATTGAGTTTTTGTTTTCTGATATGGTTGGAGGTAGCAGATTATTTTTTGTACTAGCGCA-ACCGTTTGATCTTTGTCCTTGTGTAAATTTGTGGGGGTATTGATCTTGCTCGTGGAA-CCAAAACATCATTATTTGTACTCTGTACTCCGTACGTACTAATTGTAAAAATACAGGAGAACAACACACGCGAACATCTAAAAAAAACTGCTTTTTTGCCGCTGATAATTGCTACTCTCTCTTTTTCACGTTAAAAAAAAAA]
[+] EMBL AK062384 [ACTGCACGAAAAAAAAAGTTTCGCTCCCCTCTCGCGGCGTATTTCCCTTCTCTCTCTCTCTCTTCCCCGTCGCGTGGCCGGCGGGAGGCGCGGCGAAGCGC GCGGCGCCGGTGTCCAGGATTTTATGCATGGCAGAAAACATGAAATTTGCTGAAGGGTCGTACGTGGCCAACGAATTGGATATGCTCTCTCTGGCTTCATCAGTATATACTGCTCCATTATTTCAAACAGAATTTGATTCAGTTTATGTGCCTGAATATGGGGACGTGGGTAACAGTCAGGATGGCCTATTTCCTGGTTTATTCATTTCAGATGGCTTTGTTTTCCCTCCAAGCGAGCATGAGAATTTGCCAATAGAATCTGATCTTGATGGATCGAACAACAATAACAATGGTCAAGAAAGCAGCTGTGCTGGGAATATCTATGAGGGTTGTAATGAACCAGCCAAAGAAGTTGATGGCAGAAGTCTGTCTGTTAGTGGTGACCTG CACTCTGCCAACGAAACTACTATCCCGAATTTAGAGCCACCTGAAATACGTGCTGAACAAGAGAAAGATAATGCAACCATCAAGTGTGATCTTCCATGTGAAGGATGGTTGAAAAGGAAATCAAATTGTCTTTCTCACCGTATGAAAGGAGTGACGACAGTCTGCACTATTGTGGCAGCTGGTGCTTTGATGGGCTTTGTTATAATAGGTCAGAGGTGGCAGCAGGACAAATTGCACCTTCATCATTTTCAGTTCAATATCGGCACTGAGGGCGTCAACAGAATCGTTGGAATATTCAGCCGTTGTAAGGATGCGCTTCCCAGTAGTCAGCAGCTCAAGTCTCTGCTTCCGACTCGCGTGCTCCCTCAAGAGCCAGTGAGTGCGTGAGTGGGACTCGCGTGGCAAATTTTGATGGCAGGCATCGCTATAATTGAGTTTTTGTTTTCTGATATGGTTGGAGGTAGCAGATTATTTTTTGTACTAGCGCA ACCGTTTGATCTTTGTCCTTGTGTAAATTTGTGGGGGTATTGATCTTGCTCGTGGAA CCAAAACATCATTATTTGTACTCTGTACTCCGTACGTACTAATTGTAAAAAT ]
[+] EMBL AU101162 [ GAGGCGCGGCGAA CGCNGAGNCGCCGGTNTCCAGGATTTTATNCATNGCAGAAAACATGAAATTTGCTGAAGGGTCGTACGTNGCCAACGAATTGGATATNCTCTCTCTGGCTTCATCAGTATATACTGCTCCATTATTTCAAACAGAATTTGATTCAGTTTATGTNCCTGAATATGGGGACGTGGGTAACAGTCAGGATNGCCTATTTCCTGGTTTATTCATTTCAGATGGCTTTGTTTTCCCTCCAAGCGAGCATGAGAATTTGCCAATAGAATCTGATCTTGATGGATCGAACAACAATAACAATGGTCAAGAAAGCAGCTGTGCTGGGAATATCTATGAGGGTTGTAATGAACCAGCCAAAGAAGTTGATGGCA ]
[+] EMBL AU101163 [ TGACCTGNAACTCTGCCAACGAAACTACTATCCCGANTTTAGAACCACCTGAAATACGTGCTGAACAAGAGAACGATAATGCAACCATCAAGTGTGATCTTCCATGTGAAGGATGGTTGAAAAGG AATCAAATTGTCTNTCTCACCGTATGAAAGGAGTGACNACAGTCTGCACTATTGTGGCAGCTGGTGCTTTGATGGGCTTTGTTATNATAGGTCAGAGGTGGCAGCAGGACAAATTGCACCTTCATCATTTTNAGTTCAATATCGGCACTGAGGGCGTCAACAGAATCGTTGGAATATTCAGCCGTTGTAAGGATGCGCTTCCCAGTAGTCAGCAGCTCAAGTCTCTGCTTCCGACTCGCGTGCTCCCTCAAGAGCCAGTGAGTGCGTGAGTGGGACTCGCGTGGCAAATTTTGATGGCAGGCATCGCTATAATTGAGTTTTTGTTTTCTGATATGGTTGGAGGTAGCAGATTATTTTTTGTACTAGCGCA ACCGTTTGATCTTTGTCCTTGTGTAAATTTGTGGGGGTATTGATCTTGCTCGTGGAA CCAAAACATCATTATTTGTACTCTGTACTCCGTACGTACTAATTGTAAAAATACAGGAGAACAACACACGCGAACATCTAAAAAAAA ]
[+] EMBL BI810406 [ caAGTTC ATATCGGCACTGAGGGCGGGAACAGAATCGTTGGAATATTCAGCCGTTGCAAGGATGCGCTTCCCAGCAGTCAGCAGCTCAAGTCTCTGCTTCCGACTCGCGTGCTCCCTCAAGAGCCATTGAGTGCGTGAGTGGGACTCGCGTGGCCAATTTTGATGGCAGGGATCGCTATAATTGAGTTTTTGTTTTCTGATATGGTTGGAGGTAGCAGATTCTTTTTTGTACTAGCGCACACCGTTTGATCTTTGTCCTTGTGTAAATTTGTGGGGGTATTGATCTTGCTCGTGCAACCCAAAACATCATTATTTGTACTCTGTACTCCGTACGTAGTAATTGTAAAAATACAGGAGAAC ACACACGCGAACATCTATCTGTACCTGCTTTTTTGCCGCTGATAATTGCTACTCTCTCTTTTTCACGTTAAAAAAAAAA]
consensusID : consensus_8778#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence
[CCCTCTCGCGGCGTATTTCCCTTCTCTCTCTCTCTCTTCCCCGTCGCGTGGCCGGCGGGAGGCGCGGCGAAGCGCGCGGCGCCGGTGTCCAGGATTTTATGCATGGCAGAAAACATGAAATTTGCTGAAGGGTCGTACGTGGCCAACGAATTGGATATGCTCTCTCTGGCTTCATCAATGGCTTTGTTTTCCCTCCAAGCGAGCATGAGAATTTGCCAATAGAATCTGATCTTGATGGATCGAACAACAATAACAATGGTCAAGAAAGCAGCTGTGCTGGGAATATCTATGAGGGTTGTAATGAACCAGCCAAAGAAGTTGATGGCAGAAGTCTGTCTGTTAGTGGTGACCTGCACTCTGCCAACGAAACTACTATCCCGAATTTAGAGCCACCTGAAATACGTGCTGAACAAGAGAAAGATAATGCAACCATCAAGTGTGATCTTCCATGTGAAGGATGGTTGAAAAGGAAATCAAATTGTCTTTCTCACCGTATGAAAGGAGTGACGACAGTCTGCACTATTGTGGCAGCTGGTGC]
[+] EMBL CF334455 [CCCTCTCGCGGCGTATTTCCCTTCTCTCTCTCTCTCTTCCCCGTCGCGTGGCCGGCGGGAGGCGCGGCGAAGCGCGCGGCGCCGGTGTCCAGGATTTTATGCATGGCAGAAAACATGAAATTTGCTGAAGGGTCGTACGTGGCCAACGAATTGGATATGCTCTCTCTGGCTTCATCAATGGCTTTGTTTTCCCTCCAAGCGAGCATGAGAATTTGCCAATAGAATCTGATCTTGATGGATCGAACAACAATAACAATGGTCAAGAAAGCAGCTGTGCTGGGAATATCTATGAGGGTTGTAATGAACCAGCCAAAGAAGTTGATGGCAGAAGTCTGTCTGTTAGTGGTGACCTGCACTCTGCCAACGAAACTACTATCCCGAATTTAGAGCCACCTGAAATACGTGCTGAACAAGAGAAAGATAATGCAACCATCAAGTGTGATCTTCCATGTGAAGGATGGTTGAAAAGGAAATCAAATTGTCTTTCTCACCGTATGAAAGGAGTGACGACAGTCTGCACTATTGTGGCAGCTGGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8778#0 ACTGCACGAAAAAAAAAGTTTCGCTCCCCTCTCGCGGCGTATTTCCCTTCTCTCTCTCTC 60
consensus_8778#1 --------------------------CCCTCTCGCGGCGTATTTCCCTTCTCTCTCTCTC 34
**********************************
consensus_8778#0 TCTTCCCCGTCGCGTGGCCGGCGGGAGGCGCGGCGAAGCGCGCGGCGCCGGTGTCCAGGA 120
consensus_8778#1 TCTTCCCCGTCGCGTGGCCGGCGGGAGGCGCGGCGAAGCGCGCGGCGCCGGTGTCCAGGA 94
************************************************************
consensus_8778#0 TTTTATGCATGGCAGAAAACATGAAATTTGCTGAAGGGTCGTACGTGGCCAACGAATTGG 180
consensus_8778#1 TTTTATGCATGGCAGAAAACATGAAATTTGCTGAAGGGTCGTACGTGGCCAACGAATTGG 154
************************************************************
consensus_8778#0 ATATGCTCTCTCTGGCTTCATCAGTATATACTGCTCCATTATTTCAAACAGAATTTGATT 240
consensus_8778#1 ATATGCTCTCTCTGGCTTCATCA------------------------------------- 177
***********************
consensus_8778#0 CAGTTTATGTGCCTGAATATGGGGACGTGGGTAACAGTCAGGATGGCCTATTTCCTGGTT 300
consensus_8778#1 ------------------------------------------------------------
consensus_8778#0 TATTCATTTCAGATGGCTTTGTTTTCCCTCCAAGCGAGCATGAGAATTTGCCAATAGAAT 360
consensus_8778#1 ------------ATGGCTTTGTTTTCCCTCCAAGCGAGCATGAGAATTTGCCAATAGAAT 225
************************************************
consensus_8778#0 CTGATCTTGATGGATCGAACAACAATAACAATGGTCAAGAAAGCAGCTGTGCTGGGAATA 420
consensus_8778#1 CTGATCTTGATGGATCGAACAACAATAACAATGGTCAAGAAAGCAGCTGTGCTGGGAATA 285
************************************************************
consensus_8778#0 TCTATGAGGGTTGTAATGAACCAGCCAAAGAAGTTGATGGCAGAAGTCTGTCTGTTAGTG 480
consensus_8778#1 TCTATGAGGGTTGTAATGAACCAGCCAAAGAAGTTGATGGCAGAAGTCTGTCTGTTAGTG 345
************************************************************
consensus_8778#0 GTGACCTGCACTCTGCCAACGAAACTACTATCCCGAATTTAGAGCCACCTGAAATACGTG 540
consensus_8778#1 GTGACCTGCACTCTGCCAACGAAACTACTATCCCGAATTTAGAGCCACCTGAAATACGTG 405
************************************************************
consensus_8778#0 CTGAACAAGAGAAAGATAATGCAACCATCAAGTGTGATCTTCCATGTGAAGGATGGTTGA 600
consensus_8778#1 CTGAACAAGAGAAAGATAATGCAACCATCAAGTGTGATCTTCCATGTGAAGGATGGTTGA 465
************************************************************
consensus_8778#0 AAAGGAAATCAAATTGTCTTTCTCACCGTATGAAAGGAGTGACGACAGTCTGCACTATTG 660
consensus_8778#1 AAAGGAAATCAAATTGTCTTTCTCACCGTATGAAAGGAGTGACGACAGTCTGCACTATTG 525
************************************************************
consensus_8778#0 TGGCAGCTGGTGCTTTGATGGGCTTTGTTATAATAGGTCAGAGGTGGCAGCAGGACAAAT 720
consensus_8778#1 TGGCAGCTGGTGC----------------------------------------------- 538
*************
consensus_8778#0 TGCACCTTCATCATTTTNAGTTCAATATCGGCACTGAGGGCGTCAACAGAATCGTTGGAA 780
consensus_8778#1 ------------------------------------------------------------
consensus_8778#0 TATTCAGCCGTTGTAAGGATGCGCTTCCCAGTAGTCAGCAGCTCAAGTCTCTGCTTCCGA 840
consensus_8778#1 ------------------------------------------------------------
consensus_8778#0 CTCGCGTGCTCCCTCAAGAGCCAGTGAGTGCGTGAGTGGGACTCGCGTGGCAAATTTTGA 900
consensus_8778#1 ------------------------------------------------------------
consensus_8778#0 TGGCAGGCATCGCTATAATTGAGTTTTTGTTTTCTGATATGGTTGGAGGTAGCAGATTAT 960
consensus_8778#1 ------------------------------------------------------------
consensus_8778#0 TTTTTGTACTAGCGCAACCGTTTGATCTTTGTCCTTGTGTAAATTTGTGGGGGTATTGAT 1020
consensus_8778#1 ------------------------------------------------------------
consensus_8778#0 CTTGCTCGTGGAACCAAAACATCATTATTTGTACTCTGTACTCCGTACGTACTAATTGTA 1080
consensus_8778#1 ------------------------------------------------------------
consensus_8778#0 AAAATACAGGAGAACAACACACGCGAACATCTAAAAAAAACTGCTTTTTTGCCGCTGATA 1140
consensus_8778#1 ------------------------------------------------------------
consensus_8778#0 ATTGCTACTCTCTCTTTTTCACGTTAAAAAAAAAA 1175
consensus_8778#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||