cluster # 8780

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Oryza sativa
cluster # 8780 cluster # 8780 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8780#0 length = 759 sequences # 1

consensus_8780#1 length = 524 sequences # 3
consensus_8780#2 length = 406 sequences # 1

consensusID : consensus_8780#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 759
fasta sequence

                              [ATACAACAACAGCAGAAACGATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCTAGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGGCCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACCTCTTGGTGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCATGCGAAGTACCCACGAACATCAGCACCATCCTTGATTGCTTGTGCAACTGACGCGAGGTATCCTTTGAAGTAACCAACCCTCGTCGTATCATTCAAGACTTGGTCAAGCGTTGCCGATTGATCATCTTCCTCATCCATGCCATTCTCAGTTACATATATCACAGGATTTCCATATCTCTTTGCTGCATAATTAAGTAATTTCCGGAGGCCCCAAGGAACTATGAAAAGCCACTCAGATGCGGCCCTTTCACCAATTTTTTCACCGGTGTTCCATTTTTCTGCAAAAAGTAAACAAATGTTACAAATAGTTTGATCATAAGGTTTCGCAAAAATGGAAGATATCATTTCATTTTGAATAACATAAAGGAGATCGCAGTAACACAAGCCAAACTGCAATAATGCTAGTATTGCCACGCGGACCAACAAATTTGCAGTGTTTTACTCCAAGAAAACAGTCTATTCTCTCCACTTGTTGTACTCGGTAAAAATAAATATCTTCTGGATCCTGATGATGAGCAATGAATCTTGAAGTA]

[+] EMBL CB630143             [ATACAACAACAGCAGAAACGATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCTAGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGGCCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACCTCTTGGTGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCATGCGAAGTACCCACGAACATCAGCACCATCCTTGATTGCTTGTGCAACTGACGCGAGGTATCCTTTGAAGTAACCAACCCTCGTCGTATCATTCAAGACTTGGTCAAGCGTTGCCGATTGATCATCTTCCTCATCCATGCCATTCTCAGTTACATATATCACAGGATTTCCATATCTCTTTGCTGCATAATTAAGTAATTTCCGGAGGCCCCAAGGAACTATGAAAAGCCACTCAGATGCGGCCCTTTCACCAATTTTTTCACCGGTGTTCCATTTTTCTGCAAAAAGTAAACAAATGTTACAAATAGTTTGATCATAAGGTTTCGCAAAAATGGAAGATATCATTTCATTTTGAATAACATAAAGGAGATCGCAGTAACACAAGCCAAACTGCAATAATGCTAGTATTGCCACGCGGACCAACAAATTTGCAGTGTTTTACTCCAAGAAAACAGTCTATTCTCTCCACTTGTTGTACTCGGTAAAAATAAATATCTTCTGGATCCTGATGATGAGCAATGAATCTTGAAGTA]




>consensus_8780#0
ATACAACAACAGCAGAAACGATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCT
AGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGG
CCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACC
TCTTGGTGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCATGCGAAGTACCCAC
GAACATCAGCACCATCCTTGATTGCTTGTGCAACTGACGCGAGGTATCCTTTGAAGTAAC
CAACCCTCGTCGTATCATTCAAGACTTGGTCAAGCGTTGCCGATTGATCATCTTCCTCAT
CCATGCCATTCTCAGTTACATATATCACAGGATTTCCATATCTCTTTGCTGCATAATTAA
GTAATTTCCGGAGGCCCCAAGGAACTATGAAAAGCCACTCAGATGCGGCCCTTTCACCAA
TTTTTTCACCGGTGTTCCATTTTTCTGCAAAAAGTAAACAAATGTTACAAATAGTTTGAT
CATAAGGTTTCGCAAAAATGGAAGATATCATTTCATTTTGAATAACATAAAGGAGATCGC
AGTAACACAAGCCAAACTGCAATAATGCTAGTATTGCCACGCGGACCAACAAATTTGCAG
TGTTTTACTCCAAGAAAACAGTCTATTCTCTCCACTTGTTGTACTCGGTAAAAATAAATA
TCTTCTGGATCCTGATGATGAGCAATGAATCTTGAAGTA

consensusID : consensus_8780#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 524
fasta sequence

                              [ATACAACAACAGCAGAAAC-GATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCTAGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGGCCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACCTCTTGGTGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCATGCGAAGTACCCACGAACATCAGCACCATCCTTGATTGCTTGTGCAACTGACGCGAGGTATCCTTTGAAGTAACCAACCCTCGTCGTATCATTCAAGACTTGGTCAAGCGTTGCCGATTGATCATCTTCCTCATCCATGCCATTCTCAGTTACATATATCACAGGATTTCCATATCTCTTTGCTGCATAATTAAGTAATTTCCGGAGGCCCCAAGGAACTATGAAAAGCCACTCAAATGCGGCCCTTTCACCAATTTTTTCACCCGGTGTTCCATTTTTCTATTCTCTCCACTTGTTG]

[+] EMBL CA762923             [ATACAACAACAGCAGAAAC GATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCTAGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGGCCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACCTCTTGGTGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCATGCGAAGTACCCACGAACATCAGCACCATCCTTGATTGCTTGTGCAACTGACGCGAGGTATCCTTTGAAGTAACCAACCCTCGTCGTATCATTCAAGACTTGGTCAAGCGTTGCCGATTGATCATCTTCCTCATCCATGCCATTCTCAGTTACATATATCACAGGATTTCCATATCTCTTTGCTGCATAATTAAGTAATTTCCGGAGGCCCCAAGGAACTATGAAAAGCCACTCAAATGCGGCCCTTTCACCAATTTTTTCACCCGGTGTTCCATTTTTCTATTCTCTCCACTTGTTG]
[-] EMBL C98908               [ TACAACAACAGCAGAAAC GATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCTAGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGGCCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACC CTTGGNGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCAAGCGAAGTANCCACGAACATCAGGACCATCCTGGATGGCTGGTGCAA                                                                                                                                                                                                                                                           ]
[-] EMBL C98907               [             AGAANCGGATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCNTAGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGGCCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACCTCTTGGTGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCATGCGAAGTACCCACGAACATCAGCACCATCCTTGATTGCTTGTGCAACTGACGCGAGGTATCCTTTGAAGTAACCAACCCTCGTCGTATCATTCAAGACTTGGTCAAGCGTTGCCGATTGATCATCTTCCTCATCCATGCCATTCTCAGTTACATATATCAC                                                                                                                                        ]




>consensus_8780#1
ATACAACAACAGCAGAAACGATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCT
AGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGG
CCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACC
TCTTGGTGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCATGCGAAGTACCCAC
GAACATCAGCACCATCCTTGATTGCTTGTGCAACTGACGCGAGGTATCCTTTGAAGTAAC
CAACCCTCGTCGTATCATTCAAGACTTGGTCAAGCGTTGCCGATTGATCATCTTCCTCAT
CCATGCCATTCTCAGTTACATATATCACAGGATTTCCATATCTCTTTGCTGCATAATTAA
GTAATTTCCGGAGGCCCCAAGGAACTATGAAAAGCCACTCAAATGCGGCCCTTTCACCAA
TTTTTTCACCCGGTGTTCCATTTTTCTATTCTCTCCACTTGTTG

consensusID : consensus_8780#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence

                              [TTTTTGAGATTATAAGCGTGAGGGCTGTAAACATGAGTGTTTGGCATTGATTCAGATTTTATTGGTATGGGCAAACCTCTGAATTTGATCAATGACAAACTAAATAGCACATCTGAGATGTATATCAATATAAGATACACTATTATGATGATGAATAGANACACTACANGNATCAATATAAGNTTNTACAACAGCAGANACGATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCTAGTTCATGTCAGCTTTGTTCTCAGNGTCATCGNCCTTTAAGAAGCGCGAGAACCANCGGGCCGAAGCCTTGGGATGNCGGGAAAGCCCATTTTNGTAATCAACATTAAACAATTGCCAAACCTCTTGGTGTTATCCCCATAGNCCCCACTACGAAAGGTTGTCC]

[-] EMBL AU089825             [TTTTTGAGATTATAAGCGTGAGGGCTGTAAACATGAGTGTTTGGCATTGATTCAGATTTTATTGGTATGGGCAAACCTCTGAATTTGATCAATGACAAACTAAATAGCACATCTGAGATGTATATCAATATAAGATACACTATTATGATGATGAATAGANACACTACANGNATCAATATAAGNTTNTACAACAGCAGANACGATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCTAGTTCATGTCAGCTTTGTTCTCAGNGTCATCGNCCTTTAAGAAGCGCGAGAACCANCGGGCCGAAGCCTTGGGATGNCGGGAAAGCCCATTTTNGTAATCAACATTAAACAATTGCCAAACCTCTTGGTGTTATCCCCATAGNCCCCACTACGAAAGGTTGTCC]




>consensus_8780#2
TTTTTGAGATTATAAGCGTGAGGGCTGTAAACATGAGTGTTTGGCATTGATTCAGATTTT
ATTGGTATGGGCAAACCTCTGAATTTGATCAATGACAAACTAAATAGCACATCTGAGATG
TATATCAATATAAGATACACTATTATGATGATGAATAGANACACTACANGNATCAATATA
AGNTTNTACAACAGCAGANACGATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGC
CTAGTTCATGTCAGCTTTGTTCTCAGNGTCATCGNCCTTTAAGAAGCGCGAGAACCANCG
GGCCGAAGCCTTGGGATGNCGGGAAAGCCCATTTTNGTAATCAACATTAAACAATTGCCA
AACCTCTTGGTGTTATCCCCATAGNCCCCACTACGAAAGGTTGTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8780#0      ATACAACAACAGCAGAAACGATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCT 60
consensus_8780#1      ATACAACAACAGCAGAAACGATTACTGTGTAATGTTCCTTTACTTTCTTCAGGATGGCCT 60
consensus_8780#2      ------------------------------------------------------------
                                                                                  

consensus_8780#0      AGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGG 120
consensus_8780#1      AGTTCATGTCAGCTTTGTTCTCAGCGTCATCGCCCTTTAAGAAGCGCGAGAACCACCGGG 120
consensus_8780#2      ----------------------------------------------------TTTTTGAG 8
                                                                               * *

consensus_8780#0      CCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACC 180
consensus_8780#1      CCGATGCTTTGGGATGCCGGGAAAGCCCATTTTTGTAATCAACATAAACAATGCCAAACC 180
consensus_8780#2      ATTATAAGCGTGAGGGCTGTAAACATGAGTGTTTGGCATTGATTCAGATTTTATTGG--- 65
                         **      *   ** *  **      * ****  **  *   * *   *        

consensus_8780#0      TCTTGGTGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCATGCGAAGTACCCAC 240
consensus_8780#1      TCTTGGTGTATCCCATAGCCCACTCGAAGTTGTCCAGGAACGACCATGCGAAGTACCCAC 240
consensus_8780#2      TATGGGCAAACCTCTGAATTTGATCAATGACAAACTAAATAGCACATCTGAGATGTATAT 125
                      * * **   * * *  *      ** * *     *   *  *  ***  **  *    * 

consensus_8780#0      GAACATCAGCACCATCCTTGATTGCTTGTGCAACTGACGCGAGGTATCCTTTGAAGTAAC 300
consensus_8780#1      GAACATCAGCACCATCCTTGATTGCTTGTGCAACTGACGCGAGGTATCCTTTGAAGTAAC 300
consensus_8780#2      CAATATAAGATACACTATTA--TGATGATG-AATAGANACACTACANGNATCAATATAA- 181
                       ** ** **   **   **   ** *  ** **  **  *     *    *  *  *** 

consensus_8780#0      CAACCCTCGTCGTATCATTCAAGACTTGGTCAAGCGTTGCCGATTGATCATCTTCCTCAT 360
consensus_8780#1      CAACCCTCGTCGTATCATTCAAGACTTGGTCAAGCGTTGCCGATTGATCATCTTCCTCAT 360
consensus_8780#2      --GNTTNTACAACAGCAGANACGATT--ACTGTGTAATGTTCCTTTACTTTCTTCAGGAT 237
                                   * **   * ** *       *   **    ** *   *****   **

consensus_8780#0      --CCATGCCATTCTCAGTTACATATATCACAGGATTTCCATATCTCTTTGCTGCATAATT 418
consensus_8780#1      --CCATGCCATTCTCAGTTACATATATCACAGGATTTCCATATCTCTTTGCTGCATAATT 418
consensus_8780#2      GGCCTAGTTCATGTCAGCTTTGT---TCTCAGNGTCATCGN-CCTTTAAGAAGCGCGAG- 292
                        **  *    * **** *   *   ** ***  *   *    ** *  *  **   *  

consensus_8780#0      AAGTAATTTCCGGAGGCCCCAAGGAACTATGAAAAGCCACTCAGATGCGGCCCTTTCACC 478
consensus_8780#1      AAGTAATTTCCGGAGGCCCCAAGGAACTATGAAAAGCCACTCAAATGCGGCCCTTTCACC 478
consensus_8780#2      AACCANCGGGCCGAAGCCTTGGGATGNCGGGAAAGCCCATTTTNGTAATCAACATTAAAC 352
                      **  *     * ** ***    *       ****  *** *    *      * ** * *

consensus_8780#0      AATTTTTTCACC-GGTGTT-CCATTTTTCTGCAAAAAGTAAACAAATGTTACAAATAGTT 536
consensus_8780#1      AATTTTTTCACCCGGTGTT-CCATTTTTCTATTC----TCTCCACTTGTTG--------- 524
consensus_8780#2      AATTGCCAAACCTCTTGGTGTTATCCCCATAGNCCCCACTACGAAAGGTTGTCC------ 406
                      ****     ***   ** *   **     *             *   ***          

consensus_8780#0      TGATCATAAGGTTTCGCAAAAATGGAAGATATCATTTCATTTTGAATAACATAAAGGAGA 596
consensus_8780#1      ------------------------------------------------------------
consensus_8780#2      ------------------------------------------------------------
                                                                                  

consensus_8780#0      TCGCAGTAACACAAGCCAAACTGCAATAATGCTAGTATTGCCACGCGGACCAACAAATTT 656
consensus_8780#1      ------------------------------------------------------------
consensus_8780#2      ------------------------------------------------------------
                                                                                  

consensus_8780#0      GCAGTGTTTTACTCCAAGAAAACAGTCTATTCTCTCCACTTGTTGTACTCGGTAAAAATA 716
consensus_8780#1      ------------------------------------------------------------
consensus_8780#2      ------------------------------------------------------------
                                                                                  

consensus_8780#0      AATATCTTCTGGATCCTGATGATGAGCAATGAATCTTGAAGTA 759
consensus_8780#1      -------------------------------------------
consensus_8780#2      -------------------------------------------