cluster # 8784

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8784 cluster # 8784 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8784#0 length = 542 sequences # 2

consensus_8784#1 length = 541 sequences # 1
consensus_8784#2 length = 454 sequences # 2

consensusID : consensus_8784#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 542
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTAAGGTAAAATTTAACTATTTCAATACGATTAAAAAACCACCATAAAAGTGAACAAATTTGAGGTGATAATTACCAGTTCTCACGGATTATAAAAAAACACCAGTCCACCTTGAATTCGTTCTTAACATGAAAAAGCCACCATTTGATGACAACAACAGGGTTGAAGGATATAGAAAGATTCATGCTTATTATATGATCCTCATTCAGCCATTCCGTTTAACATATGACAGGGGCATCTGAAAATATTTCCAACCAACGCCGGCCATACCATAAAATTGAACCATCACATGATATATATGCTACAAACCAGGGAGGTGAAGGGTGAATTCGTTTTGCGACAGCCCGAGGAGACGAACAAACCAAGGGCGATGGGAGAGAAAGAGCCACAGCCTATGGGAGTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTCCCTGGCGTACTGCTGCCCAGGTAAGGGAACCGACNCGAGGGGAGGGAGGGAGTGAGCTTACCGGNAGCACCGCTGCCCCCCTTGTCTCGT]

[+] EMBL CA761889             [TTTTTTTTTTTTTTTTTTTTTTAAGGTAAAATTTAACTATTTCAATACGATTAAAAAACCACCATAAAAGTGAACAAATTTGAGGTGATAATTACCAGTTCTCACGGATTATAAAAAAACACCAGTCCACCTTGAATTCGTTCTTAACATGAAAAAGCCACCATTTGATGACAACAACAGGGTTGAAGGATATAGAAAGATTCATGCTTATTATATGATCCTCATTCAGCCATTCCGTTTAACATATGACAGGGGCATCTGAAAATATTTCCAACCAACGCCGGCCATACCATAAAATTGAACCATCACATGATATATATGCTACAAACCAGGGAGGTGAAGGGTGAATTCGTTTTGCGACAGCCCGAGGAGACGAACAAACCAAGGGCGATGGGAGAGAAAGAGCCACAGCCTATGGGAGTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTCCCTGGCGTACTGCTGCCCAGGTAAGGGAACCGACNCGAGGGGAGGGAGGGAGTGAGCTTACCGGNAGCACCGCTGCCCCCCTTGTCTCGT]
[+] EMBL CA761943             [TTTTTTTTTTTTTTTTTTTTTTAAGGTAAAATTTAACTATTTCAATACGATTAAAAAACCACCATAAAAGTGAACAAATTTGAGGTGATAATTACCAGTTCTCACGGATTATAAAAAAACACCAGTCCACCTTGAATTCGTTCTTAACATGAAAAAGCCACCATTTGATGACAACAACAGGGTTGAAGGATATAGAAAGATTCATGCTTATTATATGATCCTCATTCAGCCATTCCGTTTAACATATGACAGGGGCATCTGAAAATATTTCCAACCAACGCCGGCCATACCATAAAATTGAACCATCACATGATATATATGCTACAAACCAGGGAGGTGAAGGGTGAATTCGTTTTGCGACAGCCCGAGGAGACGAACAAACCAAGGGCGATGGGAGAGAAAGAGCCACAGCCTATGGGAGTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTCCCTGGCGTACTGCTGCCCAGGTAAGGGAACCGACNCGAGGGGAGGGAGGGAGTGAGCTTACCGGNAGCACCGCTGCCCCCCTTGTCTCGT]




>consensus_8784#0
TTTTTTTTTTTTTTTTTTTTTTAAGGTAAAATTTAACTATTTCAATACGATTAAAAAACC
ACCATAAAAGTGAACAAATTTGAGGTGATAATTACCAGTTCTCACGGATTATAAAAAAAC
ACCAGTCCACCTTGAATTCGTTCTTAACATGAAAAAGCCACCATTTGATGACAACAACAG
GGTTGAAGGATATAGAAAGATTCATGCTTATTATATGATCCTCATTCAGCCATTCCGTTT
AACATATGACAGGGGCATCTGAAAATATTTCCAACCAACGCCGGCCATACCATAAAATTG
AACCATCACATGATATATATGCTACAAACCAGGGAGGTGAAGGGTGAATTCGTTTTGCGA
CAGCCCGAGGAGACGAACAAACCAAGGGCGATGGGAGAGAAAGAGCCACAGCCTATGGGA
GTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTCCCTGGCGTACTGCTGCCCAGGTAAGGGA
ACCGACNCGAGGGGAGGGAGGGAGTGAGCTTACCGGNAGCACCGCTGCCCCCCTTGTCTC
GT

consensusID : consensus_8784#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence

                              [TTTTTTTTTTTGTAAAAAAAAAAATACTGAACCAACCATCCATCTATTTCATTGTAATGACTTTTTGTTGGTGATATATACATATACATATAAAACTGCAAACTCAATCAGCCCACCATTGACTGTTGGTGACCTTCTAAAATCAAAGGTCATGGTCACATGAGACAAAGTGATTCAAAGATGATAGTGTGCAGGTATAAGTTAAAATTTAACTATTTCAATACGATTAAGAAACCACCATAAAAGTGAACAAATTTGAGGTGATAATTACCAGTTCTCACGGATTATAAAAAAACACCAGTCCACCTTGAATTCGTTCTTAACATGAAAAAACCACCATTTGATGACAACAACAGGGTTGAAGGATATAGAAAGATCCATGCTTATTATATGATCCTCATTCAGCCATTCCTTTTAACATATGACAGGGGCATCTGAAAATATTTCCAACCAACGCCGGCCATACCATAAAATTGAACCATCACATGATATATATGCTACAAACCTACAAGGCAATTACGGAAACGGTAACAAAACTGAA]

[+] EMBL CF334262             [TTTTTTTTTTTGTAAAAAAAAAAATACTGAACCAACCATCCATCTATTTCATTGTAATGACTTTTTGTTGGTGATATATACATATACATATAAAACTGCAAACTCAATCAGCCCACCATTGACTGTTGGTGACCTTCTAAAATCAAAGGTCATGGTCACATGAGACAAAGTGATTCAAAGATGATAGTGTGCAGGTATAAGTTAAAATTTAACTATTTCAATACGATTAAGAAACCACCATAAAAGTGAACAAATTTGAGGTGATAATTACCAGTTCTCACGGATTATAAAAAAACACCAGTCCACCTTGAATTCGTTCTTAACATGAAAAAACCACCATTTGATGACAACAACAGGGTTGAAGGATATAGAAAGATCCATGCTTATTATATGATCCTCATTCAGCCATTCCTTTTAACATATGACAGGGGCATCTGAAAATATTTCCAACCAACGCCGGCCATACCATAAAATTGAACCATCACATGATATATATGCTACAAACCTACAAGGCAATTACGGAAACGGTAACAAAACTGAA]




>consensus_8784#1
TTTTTTTTTTTGTAAAAAAAAAAATACTGAACCAACCATCCATCTATTTCATTGTAATGA
CTTTTTGTTGGTGATATATACATATACATATAAAACTGCAAACTCAATCAGCCCACCATT
GACTGTTGGTGACCTTCTAAAATCAAAGGTCATGGTCACATGAGACAAAGTGATTCAAAG
ATGATAGTGTGCAGGTATAAGTTAAAATTTAACTATTTCAATACGATTAAGAAACCACCA
TAAAAGTGAACAAATTTGAGGTGATAATTACCAGTTCTCACGGATTATAAAAAAACACCA
GTCCACCTTGAATTCGTTCTTAACATGAAAAAACCACCATTTGATGACAACAACAGGGTT
GAAGGATATAGAAAGATCCATGCTTATTATATGATCCTCATTCAGCCATTCCTTTTAACA
TATGACAGGGGCATCTGAAAATATTTCCAACCAACGCCGGCCATACCATAAAATTGAACC
ATCACATGATATATATGCTACAAACCTACAAGGCAATTACGGAAACGGTAACAAAACTGA
A

consensusID : consensus_8784#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 454
fasta sequence

                              [CCAACCCACCAAAATTTTCATATCTCCTAACCAAACAAAGCAATTAATAGCTCTCAATCCCTCTTAAAAACT-CCCCTCAACCATAAAAGAAATCCAAAGTTTGGCCTCTCACCTTGACCATCAGTTACAGGAATTAAAAGGCGGATTATTACAGTGAAATAGGTGGCTATTACTCACCAGGGAGGTGAAGGGTGAATTCGTTTTGCGACAGCCCGAGGAGACGAACAAACCAAGGGCGATGGGAGAGAAAGAGCCACAGCCTATGGGAGTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTCCCTGGCGTACTGCTGCCCAGGTAAGGGAACCGACGCGAGGGGAGGGAGGGAGTGAGNTGAGCGGCAGCACCGCTGCACGCGCCCTGGCTGTCGCTGCGTGCAATGCGGGAGGAGGGGAAGGGGAACCAGGCGGCGCCGCATCTGCGTGGGTGGA]

[-] EMBL CB637335             [CCAACCCACCAAAATTTTCATATCTCCTAACCAAACAAAGCAATTAATAGCTCTCAATCCCTCTTAAAAACT CCCCTCAACCATAAAAGAAATCCAAAGTTTGGCCTCTCACCTTGACCATCAGTTACAGGAATTAAAAGGCGGATTATTACAGTGAAATAGGTGGCTATTACTCACCAGGGAGGTGAAGGGTGAATTCGTTTTGCGACAGCCCGAGGAGACGAACAAACCAAGGGCGATGGGAGAGAAAGAGCCACAGCCTATGGGAGTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTCCCTGGCGTACTGCTGCCCAGGTAAGGGAACCGACGCGAGGGGAGGGAGGGAGTGAGNTGAGCGGCAGCACCGCTGCACGCGCCCTGGCTGTCG                                                             ]
[-] EMBL CF334261             [              TTTTCATATCTCCTAACCAAACAAAGCAATTAATAGCTCTCAATCCCTCTTAAAAACTCCCCCTCAACCATAAAAGAAATCCAAAGTTTGGCCTCTCACCTTGACCATCAGTTACAGGAATTAAAAGGCGGATTATTACAGTGAAATAGGTGGCTATTACTCACCAGGGAGGTGAAGGGTGAATTCGTTTTGCGACAGCCCGAGGAGACGAACAAACCAAGGGCGATGGGAGAGAAAGAGCCACAGCCTATGGGAGTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTCCCTGGCGTACTGCTGCCCAGGTAAGGGAACCGACGCGAGGGGAGGGAGGGAGTGAGCTGAGCGGCAGCACCGCTGCACGCGCCCTGGCTGTCGCTGCGTGCAATGCGGGAGGAGGGGAAGGGGAACCAGGCGGCGCCGCATCTGCGTGGGTGGA]




>consensus_8784#2
CCAACCCACCAAAATTTTCATATCTCCTAACCAAACAAAGCAATTAATAGCTCTCAATCC
CTCTTAAAAACTCCCCTCAACCATAAAAGAAATCCAAAGTTTGGCCTCTCACCTTGACCA
TCAGTTACAGGAATTAAAAGGCGGATTATTACAGTGAAATAGGTGGCTATTACTCACCAG
GGAGGTGAAGGGTGAATTCGTTTTGCGACAGCCCGAGGAGACGAACAAACCAAGGGCGAT
GGGAGAGAAAGAGCCACAGCCTATGGGAGTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTC
CCTGGCGTACTGCTGCCCAGGTAAGGGAACCGACGCGAGGGGAGGGAGGGAGTGAGNTGA
GCGGCAGCACCGCTGCACGCGCCCTGGCTGTCGCTGCGTGCAATGCGGGAGGAGGGGAAG
GGGAACCAGGCGGCGCCGCATCTGCGTGGGTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8784#0      ------------------------------------------------------------
consensus_8784#1      TTTTTTTTTTTGTAAAAAAAAAAATACTGAACCAACCATCCATCTATTTCATTGTAATGA 60
consensus_8784#2      ------------------------------------------------------------
                                                                                  

consensus_8784#0      ------------------------------------------------------------
consensus_8784#1      CTTTTTGTTGGTGATATATACATATACATATAAAACTGCAAACTCAATCAGCCCACCATT 120
consensus_8784#2      --------------------------------------CCAACCCACCAAAATTTTCATA 22
                                                                                  

consensus_8784#0      --------------------------------------------------------TTTT 4
consensus_8784#1      GACTGTTGGTGACCTTCTAAAATCAAAGGTCATGGTCACATGAGACAAAGTGATTCAAAG 180
consensus_8784#2      TCTCCTAACCAAACAAAGCAATTAATAGCTCTCAATCCCTCTTAAAAACTCCCCTCAACC 82
                                                                                  

consensus_8784#0      TTTTTTTTTTTTTTTTTTAAGGTAAAATTTAACTATTTCAATACGATTAAAAAACCACCA 64
consensus_8784#1      ATGATAGTGTGCAGGTATAAGTTAAAATTTAACTATTTCAATACGATTAAGAAACCACCA 240
consensus_8784#2      ATAAAAGAAATC---CAAAGTTTGGCCTCTCACCTTGACCATCAGTTACAGGAATTAAAA 139
                       *                *   *    * * **  *  * **  * *  *  **  *  *

consensus_8784#0      TAAAAGTGAACAAATTTGAGGTGATAATTACCAGTTCTCACGGATTATAAAAAAACACCA 124
consensus_8784#1      TAAAAGTGAACAAATTTGAGGTGATAATTACCAGTTCTCACGGATTATAAAAAAACACCA 300
consensus_8784#2      GGCGGATTATTACAGTGAAATAGGTGGCTATTACTCACCAGGGA----GGTGAAGGGTGA 195
                            * *  * * *  *   * *   **  * *   ** ***        **     *

consensus_8784#0      GTCCACCTTGAATTCGTTCTTA-ACATGAAAAAGCCACCATTTGATGACAACAACAGGGT 183
consensus_8784#1      GTCCACCTTGAATTCGTTCTTA-ACATGAAAAAACCACCATTTGATGACAACAACAGGGT 359
consensus_8784#2      ATTCGTTTTGCGACAGCCCGAGGAGACGAACAAACCAAGGGC-GATGGGAGAGAAAGAGC 254
                       * *   ***     *  *    * * *** ** ***      ****  *   * ** * 

consensus_8784#0      TGAAGGATATAGAAA---GATTCATGCTTATTATATGATCCTCATTCA-GCCATTCCGTT 239
consensus_8784#1      TGAAGGATATAGAAA---GATCCATGCTTATTATATGATCCTCATTCA-GCCATTCCTTT 415
consensus_8784#2      CACAGCCTATGGGAGTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTCCCTGGCGTACTGCT 314
                         **  *** * *    *   * ****          **  * * *  * * * *   *

consensus_8784#0      TAACATATGACAGG---GGCATCTGAAAATATTTCCAACCAAC--GCCGGCCATACCATA 294
consensus_8784#1      TAACATATGACAGG---GGCATCTGAAAATATTTCCAACCAAC--GCCGGCCATACCATA 470
consensus_8784#2      GCCCAGGTAAGGGAACCGACGCGAGGGGAGGGAGGGAGTGAGNTGAGCGGCAGCACCGCT 374
                         **  * *  *    * *    *   *       *   *      ****   ***   

consensus_8784#0      AAAT-TGAACCATCACATGATATATATGCTACAAACCAGGGAGGTGAAGGGTGAATTCGT 353
consensus_8784#1      AAAT-TGAACCATCACATGATATATATGCTACAAACCTACAAGGCAATTACGGAAACGGT 529
consensus_8784#2      GCACGCGCCCTGGCTGTCGCTGCGTGCAATGCGGGAGGAGGGGAAGGGGAACCAGGCGGC 434
                        *   *  *   *    * *   *    * *          *          *    * 

consensus_8784#0      TTTGCGACAGCCCGAGGAGACGAACAAACCAAGGGCGATGGGAGAGAAAGAGCCACAGCC 413
consensus_8784#1      AACAAAACTGAA------------------------------------------------ 541
consensus_8784#2      GCCGCATCTGCGTGGGTGGA---------------------------------------- 454
                             * *                                                  

consensus_8784#0      TATGGGAGTGGGGCGCCTGCTCGGGGAGCTCTCTGCCTCCCTGGCGTACTGCTGCCCAGG 473
consensus_8784#1      ------------------------------------------------------------
consensus_8784#2      ------------------------------------------------------------
                                                                                  

consensus_8784#0      TAAGGGAACCGACNCGAGGGGAGGGAGGGAGTGAGCTTACCGGNAGCACCGCTGCCCCCC 533
consensus_8784#1      ------------------------------------------------------------
consensus_8784#2      ------------------------------------------------------------
                                                                                  

consensus_8784#0      TTGTCTCGT 542
consensus_8784#1      ---------
consensus_8784#2      ---------