cluster # 8789

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Oryza sativa
cluster # 8789 cluster # 8789 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8789#0 length = 434 sequences # 4

consensus_8789#1 length = 242 sequences # 1

consensusID : consensus_8789#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 434
fasta sequence

                              [AGTATCATTTTGAAGAATCTGAAGATTTTTTCCTACTCCGCTCGGTCGCTCCGCCCCAGGGGCGACGCGAGCGGCGAAACCCGCCGCCGCCCCACCCTTCCCCTCCTCCCCCCGCCTCGCCGCCGCTCGAGCAGCCGCCGGCAAAGCCGGGCAGCTGCAAAGACGGCGGCGGCGGGGCTCCCCATCTCCCTCACTCCATGGTCAACGCA-TT-G-GGGCACCGACGAGATCGGAGGCAGGAGCACGGCACCGGCGACGACGTTCGGA-TCCGGCGCC-GGTGAGCTCGGATCCGGCCCTCGCTTGG-GGCAANAGCCTACGAGGGGCTGGCGGGATGGTGGCGGAGTCGGCGCGANTTACGCACCGACGANGGCCGNGCGGCGGCGACGGCGACGAGCCCAGGCCAGCGCGTTGTGAGTTCGGATCCGGCCTCCATTTGC]

[+] EMBL AU069973             [AGTATCATTTTGAAGAATCTGAAGATTTTTTCCTACTCCGCTCGGTCGCTCCGCCCCAGGGGCGACGCGAGCGGCGAAACCCGCCGCCGCCCCACCCTTCCCCTCCTCCCCCCGCCTCGCCGCCGCTCGAGCAGCCGCCGGCAAAGCCGGGCAGCTGCAAAGACGGCGGCGGCGGGGCTCCCCATCTCCCTCACTCCATGGTCAACGCAGTTGG GGGCACCGACGAGATCGGAGGCAGGAGCACGGCACCGGCGACGACGTTCGGA TCCGGCGCC GGTGAGCTCGGATCNGGCCCT                                                                                                                                             ]
[+] EMBL C26168               [                        ATTTTTTCCTACTCCGCTCGGTCGCTCCGCCCCAGGGG GACGCGAGCNGCGAAACCCGCTGCCGNCCCACCCTTCCCCTCCTCCCCNCGCCTCGNCGCCGCTCGAGCAGCCGCTGGCAAAG CGGTCAGCTGCAAAGACGGCGGCGGCGGGGCTCCCCATCTCCCTCACTCCATGGTCAACGNA TT GTGNGCACCGACGAGATCGGAGGCAGGAGCACGGCACCGGCGACGACGTTCGGA TCCGGCGTC GGTGAGCTCGGATCCGGCCCTCGCTTGG GGCAAN                                                                                                                               ]
[+] EMBL AU082479             [                                 TACTCCGCTCGGTCGCTCCGCCCCAGGGGCGACGCGAGCGGCGAAACCCGCCGCCGCCCCACCCTTCCCCTCCTCCCCCCGCCTCGCCGCCGCTCGAGCAGCCGCCGGCAAAGCCGNGCAGCTGCAAAGACGGCGGCGGCGGGGCTCCCCATCTCCCTCACTCCATGGTCAACGCA TT G NGGCACCGACGAGATCGGAGGCAGGAGCACGGCACCGGCGACGACGTTCGGA TCCGGCGCC GGTGAGCTCGGATCCGGCCCTCGNTTGGCGGCAGGAGCCTACGAGGGGCTGGCGGGATGGTGGCGGAGTCGGCGCGANTTACGCACCGACGANGGCCGNGCGGCGGCGACGGCGACGAGCCCAGGCCAGCGCGTTGTGAGTTCGGATCCGGCCTCCATTTGC]
[+] EMBL AU082537             [                                 TACTCCGCTCGGTCGCTCCGCCCCAGGGGCGACGCGAGCNGCGAAACCCGCCGCCGCCCCACCCTTCCCCTCCTCCCCCCGCCTCGCCGCCGCTCGAGCAGCCGCCGGCAAAGCCGGGCAGCTGCAAAGACGGCGGCGGCGGGGCTCCCCATCTCCCTCACTCCATGGTCAACGCA TTNG GGGCACCGACGAGATCGGAGGCAGGAGCACGGCACCGGCNACGACGTTCGGATTCTGGCGCCGGGTTAACTCGGATTCGGgc                                                                                                                                               ]




>consensus_8789#0
AGTATCATTTTGAAGAATCTGAAGATTTTTTCCTACTCCGCTCGGTCGCTCCGCCCCAGG
GGCGACGCGAGCGGCGAAACCCGCCGCCGCCCCACCCTTCCCCTCCTCCCCCCGCCTCGC
CGCCGCTCGAGCAGCCGCCGGCAAAGCCGGGCAGCTGCAAAGACGGCGGCGGCGGGGCTC
CCCATCTCCCTCACTCCATGGTCAACGCATTGGGGCACCGACGAGATCGGAGGCAGGAGC
ACGGCACCGGCGACGACGTTCGGATCCGGCGCCGGTGAGCTCGGATCCGGCCCTCGCTTG
GGGCAANAGCCTACGAGGGGCTGGCGGGATGGTGGCGGAGTCGGCGCGANTTACGCACCG
ACGANGGCCGNGCGGCGGCGACGGCGACGAGCCCAGGCCAGCGCGTTGTGAGTTCGGATC
CGGCCTCCATTTGC

consensusID : consensus_8789#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 242
fasta sequence

                              [CGCAGTTGGGGCACCGACGAGATCGGAGGCAGGAGCACGGNACCGGCGACGACGTTCGGATCCGGCGCCGGTGAGCTCGGATCCGGCCCTAGCTTGGCGGCAGCNAGCCTACGAGGGGCTGGCGGGATGGTGGCGTNGTCGGCGCGAGCTACGCNACGACGAGGCCGGGCGGCGGCGACGGCNACGAGCCCAGGCCAGCNCTTGGTGAGCTNGGNTCCGGCCCTCCATTGGCCGGATCTGGT]

[+] EMBL OSR25931A            [CGCAGTTGGGGCACCGACGAGATCGGAGGCAGGAGCACGGNACCGGCGACGACGTTCGGATCCGGCGCCGGTGAGCTCGGATCCGGCCCTAGCTTGGCGGCAGCNAGCCTACGAGGGGCTGGCGGGATGGTGGCGTNGTCGGCGCGAGCTACGCNACGACGAGGCCGGGCGGCGGCGACGGCNACGAGCCCAGGCCAGCNCTTGGTGAGCTNGGNTCCGGCCCTCCATTGGCCGGATCTGGT]




>consensus_8789#1
CGCAGTTGGGGCACCGACGAGATCGGAGGCAGGAGCACGGNACCGGCGACGACGTTCGGA
TCCGGCGCCGGTGAGCTCGGATCCGGCCCTAGCTTGGCGGCAGCNAGCCTACGAGGGGCT
GGCGGGATGGTGGCGTNGTCGGCGCGAGCTACGCNACGACGAGGCCGGGCGGCGGCGACG
GCNACGAGCCCAGGCCAGCNCTTGGTGAGCTNGGNTCCGGCCCTCCATTGGCCGGATCTG
GT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8789#0      AGTATCATTTTGAAGAATCTGAAGATTTTTTCCTACTCCGCTCGGTCGCTCCGCCCCAGG 60
consensus_8789#1      ------------------------------------------------------------
                                                                                  

consensus_8789#0      GGCGACGCGAGCGGCGAAACCCGCCGCCGCCCCACCCTTCCCCTCCTCCCCCCGCCTCGC 120
consensus_8789#1      ------------------------------------------------------------
                                                                                  

consensus_8789#0      CGCCGCTCGAGCAGCCGCCGGCAAAGCCGGGCAGCTGCAAAGACGGCGGCGGCGGGGCTC 180
consensus_8789#1      ------------------------------------------------------------
                                                                                  

consensus_8789#0      CCCATCTCCCTCACTCCATGGTCAACGCA-TTGGGGCACCGACGAGATCGGAGGCAGGAG 239
consensus_8789#1      -------------------------CGCAGTTGGGGCACCGACGAGATCGGAGGCAGGAG 35
                                               **** ******************************

consensus_8789#0      CACGGCACCGGCGACGACGTTCGGATCCGGCGCCGGTGAGCTCGGATCCGGCCCTCGCTT 299
consensus_8789#1      CACGGNACCGGCGACGACGTTCGGATCCGGCGCCGGTGAGCTCGGATCCGGCCCTAGCTT 95
                      ***** ************************************************* ****

consensus_8789#0      GG-GGCAANA-GCCTACGAGGGGCTGGCGGGATGGTGGCGGAGTCGGCGCGANTTACGCA 357
consensus_8789#1      GGCGGCAGCNAGCCTACGAGGGGCTGGCGGGATGGTGGCGTNGTCGGCGCGAGCTACGCN 155
                      ** ****    *****************************  **********  ***** 

consensus_8789#0      CCGACGANGGCCGNGCGGCGGCGACGGCGACGAGCCCAGGCCAGCGCGTTGTGAGTTCGG 417
consensus_8789#1      ACGACGAGG-CCGGGCGGCGGCGACGGCNACGAGCCCAGGCCAGCNCTTGGTGAGCTNGG 214
                       ****** * *** ************** **************** * * ***** * **

consensus_8789#0      ATCCGGCC-TCCATTTGC---------- 434
consensus_8789#1      NTCCGGCCCTCCATTGGCCGGATCTGGT 242
                       ******* ****** **