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Oryza sativa
cluster # 8801 cluster # 8801       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8801#0 length = 953 sequences # 4  
consensus_8801#1 length = 660 sequences # 1  

consensusID : consensus_8801#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 953
fasta sequence
                              [CTTCCTTCCTTTCCTCGATCGATCGATCCGCAACATGCCCGCGGCGGCGGCGGCGGCGGCGCGGACCCGACCTGTACGCCGTCCTCGGCCTCAGCAGGGAGTGCACCGACGCCGACCTCAGGCTCGCCTACCGCAAGCTCGCCATGATATGGCATCCGGACAGGTGCTCGGTGGCCGGCGGCAGCGCGAGC-CGGCGGGCGTCGACGAGGCCAAGGAGCGATTCCAGGAGATCCAGGGCGCCTACTCCGTGCTCTCCGACTCCAACAAGCGCTTCCTCTACGACGTCGGCGTCTACGACGGCAACGACGGCGACGACGACGACGACGAAGCAGATCTGTCGGGGATGGGCGATTTCCTCGGCGAGATGGCGCAGATGATGAGCCAGGCGACGCCTGCGGAGAGCTTCGAGGAGTTGCAGCAGCTGTTCGTGGACATGTTCCAGGACGACATCGACGCCGGCCTCTGCCAGTCGACGCCGCCGCCGCCGTCATGGCCGTCGCCTCCGGCGGCCGCCAATGCACGATCGCCGGCGGCGGCGGCGACTTCACGCAAGGGCGTGAACAAGCGGTGCTCACCGGCGGCGATGGACATGGACTCCGGTTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACAAACGGTGTATAATTAATTTAGGAGTAAGAGCATGTTTCTATTTGATCATTGATCGTAATGAG]

[+] EMBL BI796534             [CTTCCTTCCTTTCCTCGATCGATCGATCCGCAACATGCCCGCGGCGGCGGCGGCGGCGGCGCGGACCCGACCTGTACGCCGTCCTCGGCCTCAGCAGGGAGTGCACCGACGCCGACCTCAGGCTCGCCTACCGCAAGCTCGCCATGATATGGCATCCGGACAGGTGCTCGGTGGCCGGCGGCAGCGCGAGC CGGCGGGCGTCGACGAGGCCAAGGAGCGATTCCAGGAGATCCAGGGCGCCTACTCCGTGCTCTCCGACTCCAACAAGCGCTTCCTCTACGACGTCGGCGTCTACGACGGCAACGACGGCGACGACGACGACGACGAAGCAGATCTGTCGGGGATGGGCGATTTCCTCGGCGAGATGGCGCAGATGATGAGCCAGGCGACGCCTGCGGAGAGCTTCGAGGAGTTGCAGCAGCTGTTCGTGGACATGTTCCAGGACGACATCGACGCCGGCCTCTGCCAGTCGACGCCGCCGCCGCCGTCATGGCCGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK111076             [                                                                                                                                                 GATATGGCATCCGGACAGGTGCTCGGTGGCCGGCGGCAGCGCGAGCGCGGCGGGCGTCGACGAGGCCAAGGAGCGATTCCAGGAGATCCAGGGCGCCTACTCCGTGCTCTCCGACTCCAACAAGCGCTTCCTCTACGACGTCGGCGTCTACGACGGCAACGACGGCGACGACGACGACGACGAAGCAGATCTGTCGGGGATGGGCGATTTCCTTGGCGAGATGGCGCAGATGATGAGCCAGGCGACGCCTGCGGAGAGCTTCGAGGAGTTGCAGCAGCTGTTCGTGGACATGTTCCAGGACGACATCGACGCCGGCCTCTGCCAGTCGACGCCGCCGCCGCCGTCATGGCCGTCGCCTCCGGCGGCCGCCAATGCACGATCGCCGGCGGCGGCGGCGACTTCACGCAAGGGCGTGAACAAGCGGTGCTCACCGGCGGCGATGGACATGGACTCCGGTTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACACACGGTGTATAATTAATTTAGGAGTAAGAGCATGTTTCTATTTGATCATTGATCGTAATGAG]
[+] EMBL CB966161             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AATGCACGATCGCCGGCGGCGGCGGCGACTTCACGCAAGGGCGTGAACAAGCGGTGCTCACCGGCGGCGATGGACATGGACTCCGGTTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTTTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACAAACGGTGTATAATTAATTTAGGAGTAAGAACATG                            ]
[+] EMBL AU172884             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GATCGCCGGCGGCGGCGGCGACTTCACGCAAGGGCGTGAACAANCGGTGCTCACCGGCGGCGATGGACATGGACTCCGGTTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAANAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAAAAA                                                             ]


>consensus_8801#0 CTTCCTTCCTTTCCTCGATCGATCGATCCGCAACATGCCCGCGGCGGCGGCGGCGGCGGC GCGGACCCGACCTGTACGCCGTCCTCGGCCTCAGCAGGGAGTGCACCGACGCCGACCTCA GGCTCGCCTACCGCAAGCTCGCCATGATATGGCATCCGGACAGGTGCTCGGTGGCCGGCG GCAGCGCGAGCCGGCGGGCGTCGACGAGGCCAAGGAGCGATTCCAGGAGATCCAGGGCGC CTACTCCGTGCTCTCCGACTCCAACAAGCGCTTCCTCTACGACGTCGGCGTCTACGACGG CAACGACGGCGACGACGACGACGACGAAGCAGATCTGTCGGGGATGGGCGATTTCCTCGG CGAGATGGCGCAGATGATGAGCCAGGCGACGCCTGCGGAGAGCTTCGAGGAGTTGCAGCA GCTGTTCGTGGACATGTTCCAGGACGACATCGACGCCGGCCTCTGCCAGTCGACGCCGCC GCCGCCGTCATGGCCGTCGCCTCCGGCGGCCGCCAATGCACGATCGCCGGCGGCGGCGGC GACTTCACGCAAGGGCGTGAACAAGCGGTGCTCACCGGCGGCGATGGACATGGACTCCGG TTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGCGCCATGGACGTCGCAGGA CGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGC GAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTG ATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTTTT GTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACAAACGGTGTA TAATTAATTTAGGAGTAAGAGCATGTTTCTATTTGATCATTGATCGTAATGAG



consensusID : consensus_8801#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 660
fasta sequence
                              [TTATTGCTGCTGCTGTTGCTGTAAAGTTACATGTGGAGGCGAATTGAGGCTCTTTTTATATTTTAGCCAAAATAAACAAATTTTGTTAATACTGAAATTTTGATAATTTCGTAATATTATCGGGTTTTAACAGGATTTCTTATGTATTTATCAAAGTTTAGTAAAAAAACTAAACAGATACACAGATTTAGCAACTTTATTAAATAATGTTATGGTTTAAAATGACATCAATTTGAATACCAAGTGTTCTTTAATACTCCTACTTACTACTAGTATACTGCCTTTACTACTAGTATACTGCCTTTGGATACGAGGTGAACTGGTGACAATGTTCTGTCATGTCTTTAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACACCACGGTGTATAATTAATTTAGGAGTAAGAACATGTTTCTATTTGATCAAAAAAAAAAAAA]

[-] EMBL CA761651             [TTATTGCTGCTGCTGTTGCTGTAAAGTTACATGTGGAGGCGAATTGAGGCTCTTTTTATATTTTAGCCAAAATAAACAAATTTTGTTAATACTGAAATTTTGATAATTTCGTAATATTATCGGGTTTTAACAGGATTTCTTATGTATTTATCAAAGTTTAGTAAAAAAACTAAACAGATACACAGATTTAGCAACTTTATTAAATAATGTTATGGTTTAAAATGACATCAATTTGAATACCAAGTGTTCTTTAATACTCCTACTTACTACTAGTATACTGCCTTTACTACTAGTATACTGCCTTTGGATACGAGGTGAACTGGTGACAATGTTCTGTCATGTCTTTAGGCGCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACACCACGGTGTATAATTAATTTAGGAGTAAGAACATGTTTCTATTTGATCAAAAAAAAAAAAA]


>consensus_8801#1 TTATTGCTGCTGCTGTTGCTGTAAAGTTACATGTGGAGGCGAATTGAGGCTCTTTTTATA TTTTAGCCAAAATAAACAAATTTTGTTAATACTGAAATTTTGATAATTTCGTAATATTAT CGGGTTTTAACAGGATTTCTTATGTATTTATCAAAGTTTAGTAAAAAAACTAAACAGATA CACAGATTTAGCAACTTTATTAAATAATGTTATGGTTTAAAATGACATCAATTTGAATAC CAAGTGTTCTTTAATACTCCTACTTACTACTAGTATACTGCCTTTACTACTAGTATACTG CCTTTGGATACGAGGTGAACTGGTGACAATGTTCTGTCATGTCTTTAGGCGCCATGGACG TCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCG CCGCCGGCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGA AGATTTTGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTG TTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACAC CACGGTGTATAATTAATTTAGGAGTAAGAACATGTTTCTATTTGATCAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8801#0      CTTCCTTCCTTTCCTCGATCGATCGATCCGCAACATGCCCGCGGCGGCGGCGGCGGCGGC 60
consensus_8801#1      ------------------------------------------------------------
                                                                                  

consensus_8801#0      GCGGACCCGACCTGTACGCCGTCCTCGGCCTCAGCAGGGAGTGCACCGACGCCGACCTCA 120
consensus_8801#1      ------------------------------------------------------------
                                                                                  

consensus_8801#0      GGCTCGCCTACCGCAAGCTCGCCATGATATGGCATCCGGACAGGTGCTCGGTGGCCGGCG 180
consensus_8801#1      ------------------------------------------------------------
                                                                                  

consensus_8801#0      GCAGCGCGAGCCGGCGGGCGTCGACGAGGCCAAGGAGCGATTCCAGGAGATCCAGGGCGC 240
consensus_8801#1      ------------------------------------------------------------
                                                                                  

consensus_8801#0      CTACTCCGTGCTCTCCGACTCCAACAAGCGCTTCCTCTACGACGTCGGCGTCTACGACGG 300
consensus_8801#1      ---------------------------------TTATTGCTGCTGCTGTTGCTGTAAAGT 27
                                                           * *  *  * *   **   * * 

consensus_8801#0      CAACGACGGCGACGACGACGACGACGAAGCAGATCT-GTCGGGGATGGGCGATTTCCTCG 359
consensus_8801#1      TACATGTGGAGGCGAATTGAGGCTCTTTTTATATTTTAGCCAAAATAAACAAATT--TTG 85
                       *     ** * ***         *     * ** *   *    **   * * **  * *

consensus_8801#0      GCGAGATGGCGCAGATGATGAGCCAGGCGACGCCTGCGGAGAGCTTCGAGGAGTTGCAGC 419
consensus_8801#1      TTAATACTGAAATTTTGATAA-TTTCGTAATATTATCGG---GTTTTAACAGGATTTCTT 141
                         * *  *      **** *     *  *      ***   * **  *   * *     

consensus_8801#0      AGCTGTTCGTGGACATGTTCCAGGACGACATCGACGCCGGCCTCTGCCAGTCGACGCCGC 479
consensus_8801#1      ATGTATTTAT---CAAAGTTTAGTAAAAAAACTAAACAGA--TACACAGATTTA-GCAAC 195
                      *  * **  *   **   *  ** *  * * * *  * *   *   *   *  * **  *

consensus_8801#0      CGCCGCCGTCATGGCCGTCGCCTCCGGCGGCCGCCAATGCACGATCGCCGGCGGCGGCGG 539
consensus_8801#1      TTTATTAAATAATGTTATGGTTTAAAATGAC-ATCAATTTG-AATACCAAGTGTTCTTTA 253
                                *  *   * *  *     * *   ****     **  *  * *       

consensus_8801#0      CGACTTCACGCAAGGGCGTGAACAAGCGGTGCTCACCGGCGGCG-ATGGACATGGACTCC 598
consensus_8801#1      ATACTCCTACTTACTACT--AGTATACTGCCTTTACTACTAGTATACTGCCTTTGGATAC 311
                        *** *     *   *   *  *  * *   * **     *   *  * * * *  * *

consensus_8801#0      GGTTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGCGCCATGGACGTCGCAG 658
consensus_8801#1      GAGGTGAAC----TGGTGACAATGTTCTG-TCATGTCTTTAGGCGCCATGGACGTCGCAG 366
                      *   *** *    ** **   ** *   * *  *** *  ********************

consensus_8801#0      GACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCG 718
consensus_8801#1      GACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCG 426
                      ************************************************************

consensus_8801#0      GCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTT 778
consensus_8801#1      GCGAGCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTT 486
                      ************************************************************

consensus_8801#0      TGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTT 838
consensus_8801#1      TGATTGCCCAGTGCTCGCCACGAAGACTGACATTTTTTTCTTTTTCTTCATTTGTTCTTT 546
                      ************************************************************

consensus_8801#0      TTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACAA-ACGGT 897
consensus_8801#1      TTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTTGGTTGAACACCACGGT 606
                      *****************************************************  *****

consensus_8801#0      GTATAATTAATTTAGGAGTAAGAGCATGTTTCTATTTGATCATTGATCGTAATGAG 953
consensus_8801#1      GTATAATTAATTTAGGAGTAAGAACATGTTTCTATTTGATCAAAAAAAAAAAAA-- 660
                      *********************** ******************   *    **    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)