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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8802#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1243 fasta sequence
[AGAGCACCCGCACCAGATCACATACACCACCACCACCACCACCTCCACCTCATCCCTCTGCCCGCGCCGCAGGAAGAGAGGAGACGACGAGGCGGCGCACCACCTCGTGTTCCCCATGGATCTCGACTCGGCCGCGGCGGCGGCTGCGGCGGCGGCGCACCACCAGCAGCAGCAGCAGCAGACCACGTCCCAGGACAAGCTGAAAGCATTGGCTTATGAGTACGGTCATGAGTTCCGAGTATTTTCAAGTGTAACATTTGAGTCAATGACTAGCAACTTGCCCGCAGCAGATCAGGAGGAAGATGATGACTTTTATGAGCTTCAGCCTGCTGACTATTTCAACTTGGTTTCGAACAGAATAGGAGAACAATCGAAAGTTTTGAAGACTCGTAAAATGCGTGAAGCAGAACTTGCTGCCCAACGAGCAAAGATAAAAAAGGCAGTAATGAGGGTGCGATTCCCTGATGGATACATACTTGAGGCCGATTTTCATCCGTCAGAAACAGTTCAAAGTCTGATGGATTTTCTGAAGAAAGTAATCTCTAGACCAGACCTGCCATTCTATCTCTATACAGTTCCACCAAAGAAGCGGATAAAAGACACTTCACTGGATTTCTACACAATTGGTTTTGTTCCTGGGGCTAATGTCTACTTCTCTTATGATCTGCCGGAAGGCTCAGAGTTAAATACAGACAGTGTAAAATCAGGACCTTATCTCCGTGAAGAAATTCGGATGTTGGATGGACTACCAATTGTCCAAGAACCTGTGCACCAACCAATTGATTCTACTATGAACTCTTCTTCTGCTCATCAATCTGATGTGTCTCAATCAGATTTTGCACCGCCAGCAAACAAGAAACCAGCTAAACCAAAGTGGTTCAAAAGGTGATGATGAGGTGAGACAGTCAGGGCGCCAAGAATGCACCACCAGAGGACGACTCTAATGTAGGGGGATAGAGAGTGAAAGCATGACAATAATGGGTTGCTGTTGGCTTTCTTGATGGATGGATACACATTGTAAAATGAAACTTTCCAAAGAAATTTCACGAGTGCTGCAGAATGATTTTTTGCGTCTGATAGCACTGCATTACACTGTACACTCCGTTGCTAACAAAGCCTCCCTTTTCCTGAGTGCATATGGCTGGGGGTGTTTGGTTGATTGCTTCACTTTGTCACGCCACACTTCAGTCATGCCACAGTTTGTAGATGTGTGTTTGTTTCAATGCCACAGTTGTGTCATGCC]
[+] EMBL AK069013 [AGAGCACCCGCACCAGATCACATACACCACCACCACCACCACCTCCACCTCATCCCTCTGCCCGCGCCGCAGGAAGAGAGGAGACGACGAGGCGGCGCACCACCTCGTGTTCCCCATGGATCTCGACTCGGCCGCGGCGGCGGCTGCGGCGGCGGCGCACCACCAGCAGCAGCAGCAGCAGACCACGTCCCAGGACAAGCTGAAAGCATTGGCTTATGAGTACGGTCATGAGTTCCGAGTATTTTCAAGTGTAACATTTGAGTCAATGACTAGCAACTTGCCCGCAGCAGATCAGGAGGAAGATGATGACTTTTATGAGCTTCAGCCTGCTGACTATTTCAACTTGGTTTCGAACAGAATAGGAGAACAATCGAAAGTTTTGAAGACTCGTAAAATGCGTGAAGCAGAACTTGCTGCCCAACGAGCAAAGATAAAAAAGGCAGTAATGAGGGTGCGATTCCCTGATGGATACATACTTGAGGCCGATTTTCATCCGTCAGAAACAGTTCAAAGTCTGATGGATTTTCTGAAGAAAGTAATCTCTAGACCAGACCTGCCATTCTATCTCTATACAGTTCCACCAAAGAAGCGGATAAAAGACACTTCACTGGATTTCTACACAATTGGTTTTGTTCCTGGGGCTAATGTCTACTTCTCTTATGATCTGCCGGAAGGCTCAGAGTTAAATACAGACAGTGTAAAATCAGGACCTTATCTCCGTGAAGAAATTCGGATGTTGGATGGACTACCAATTGTCCAAGAACCTGTGCACCAACCAATTGATTCTACTATGAACTCTTCTTCTGCTCATCAATCTGATGTGTCTCAATCAGATTTTGCACCGCCAGCAAACAAGAAACCAGCTAAACCAAAGTGGTTCAAAAGGTGATGATGAGGTGAGACAGTCAGGGCGCCAAGAATGCACCACCAGAGGACGACTCTAATGTAGGGGGATAGAGAGTGAAAGCATGACAATAATGGGTTGCTGTTGGCTTTCTTGATGGATGGATACACATTGTAAAATGAAACTTTCCAAAGAAATTTCACGAGTGCTGCAGAATGATTTTTTGCGTCTGATAGCACTGCATTACACTGTACACTCCGTTGCTAACAAAGCCTCCCTTTTCCTGAGTGCATATGGCTGGGGGTGTTTGGTTGATTGCTTCACTTTGTCACGCCACACTTCAGTCATGCCACAGTTTGTAGATGTGTGTTTGTTTCAATGCCACAGTTGTGTCATGCC]
[+] EMBL AK061463 [ AGATCACATACACCACCACCACCACCACCTCCACCTCATCCCTCTGCCCGCGCCGCAGGAAGAGAGGAGACGACGAGGCGGCGCACCACCTCGTGTTCCCCATGGATCTCGACTCGGCCGCGGCGGCGGCTGCGGCGGCGGCGCACCACCAGCAGCAGCAGCAGCAGACCACGTCCCAGGACAAGCTGAAAGCATTGGCTTATGAGTACGGTCATGAGTTCCGAGTATTTTCAAGTGTAACATTTGAGTCAATGACTAGCAACTTGCCCGCAGCAGATCAGGAGGAAGATGATGACTTTTATGAGCTTCAGCCTGCTGACTATTTCAACTTGGTTTCGAACAGAATAGGAGAACAATCGAAAGTTTTGAAGACTCGTAAAATGCGTGAAGCAGAACTTGCTGCCCAACGAGCAAAGATAAAAAAGGCAGTAATGAGGGTGCGATTCCCTGATGGATACATACTTGAGGCCGATTTTCATCCGTCAGAAACAGTTCAAAGTCTGATGGATTTTCTGAAGAAAGTAATCTCTAGACCAGACCTGCCATTCTATCTCTATACAGTTCCACCAAAGAAGCGGATAAAAGACACTTCACTGGATTTCTACACAATTGGTTTTGTTCCTGGGGCTAATGTCTACTTCTCTTATGATCTGCCGGAAGGCTCAGAGTTAAATACAGACAGTGTAAAATCAGGACCTTATCTCCGTGAAGAAATTCGGATGTTGGATGGACTACCAATTGTCCAAGAACCTGTGCACCAACCAATTGATTCTACTATGAACTCTTCTTCTGCTCATCAATCTGATGTGTCTCAATCAGATTTTGCACCGCCAGCAAACAAGAAACCAGCTAAACCAAAGTGGTTCAAAAGGTGATGATGAGGTGAGACAGTCAGGGCGCCAAGAATGCACCACCAGAGGACGACTCTAATGTAGGGGGATAGAGAGTGAAAGCATGACAATAATGGGTTGCTGTTGGCTTTCTTGATGGATGGATACACATTGTAAAATGAAACTTTCCAAAGAAATTTCACGAGTGCTGCAGAATGATTTTTTGCGTCTGATAGCACTGCATTACACTGTACACTCCGTTGCTAACAAAGCCTCCCTTT ]
consensusID : consensus_8802#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 489 fasta sequence
[CAGTGTAAAATCAGGACCTTATCTCCGTGAAGAAATTCGGATGTTGGATGGACTACCAATTGTCCAAGAACCTGTGCACCAACCAATTGATTCTACTATGAACTCTTCTTCTGCTCATCAATCTGATGTGTCTCAATCAGATTTTGCACCGCCAGCAAACAAGAAACCAGCTAAACCAAAGTGGTTCAAAAGGTGATGATGAGGTGAGACAGTCAGGGCGCCAAGAATGCACCACCAGAGGACGACTCTAATGTAGGGGGATAGAGAGTGAAAGCATGACAATAATGGGTTGCTGTTGGCTTTCTTGATGGATGGATACACATTGTAAAATGAAACTTTCCAAAGAAATTTCACGAGTGCTGCAGAATGATTTTTTGCGTCTGATAGCACTGCATTACACTGTACACTCCGTTGCTAACAAAGCCTCCCTTTTCCTGAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTATCGTTGAC]
[+] EMBL CF332390 [CAGTGTAAAATCAGGACCTTATCTCCGTGAAGAAATTCGGATGTTGGATGGACTACCAATTGTCCAAGAACCTGTGCACCAACCAATTGATTCTACTATGAACTCTTCTTCTGCTCATCAATCTGATGTGTCTCAATCAGATTTTGCACCGCCAGCAAACAAGAAACCAGCTAAACCAAAGTGGTTCAAAAGGTGATGATGAGGTGAGACAGTCAGGGCGCCAAGAATGCACCACCAGAGGACGACTCTAATGTAGGGGGATAGAGAGTGAAAGCATGACAATAATGGGTTGCTGTTGGCTTTCTTGATGGATGGATACACATTGTAAAATGAAACTTTCCAAAGAAATTTCACGAGTGCTGCAGAATGATTTTTTGCGTCTGATAGCACTGCATTACACTGTACACTCCGTTGCTAACAAAGCCTCCCTTTTCCTGAAAAAA ]
[-] EMBL CF332391 [ AGTGTAAAATCAGGACCTTATCTCCGTGAAGAAATTCGGATGTTGGATGGACTACCAATTGTCCAAGAACCTGTGCACCAACCAATTGATTCTACTATGAACTCTTCTTCTGCTCATCAATCTGATGTGTCTCAATCAGATTTTGCACCGCCAGCAAACAAGAAACCAGCTAAACCAAAGTGGTTCAAAAGGTGATGATGAGGTGAGACAGTCAGGGCGCCAAGAATGCACCACCAGAGGACGACTCTAATGTAGGGGGATAGAGAGTGAAAGCATGACAATAATGGGTTGCTGTTGGCTTTATTGATGGATGGATACACATTGTAAAATGAAACTTTCCAAAGAAATTTCACGAGTGCTGCAGAATGATTTTTTGCGTCTGATAGCACTGCATTACACTGTACACTCCGTTGCTAACAAAGCCTCCCTTTTCCTGAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTATCGTTGAC]
[+] EMBL CB685185 [ agctccttcAAGTGGTTCAAAAGGTGATGATGAGGTGAGACAGTCAGGGCGCCAAGAATGCACCACCAGAGGACGACTCTAATGTAGGGGGATAGAGAGTGAAAGCATGACAATAATGGGTTGCTGTTGGCTTTCTTGATGGATGGATACACATTGTAAAATGAAACTTTCCAAAGAAATTTCACGAGTGCTGCAGAATGATTTTTTGCGTCTGATAGCACTGCATTACACTGTACACTCCGTTGCTAACAAAGCCTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8802#0 AGAGCACCCGCACCAGATCACATACACCACCACCACCACCACCTCCACCTCATCCCTCTG 60
consensus_8802#1 ------------------------------------------------------------
consensus_8802#0 CCCGCGCCGCAGGAAGAGAGGAGACGACGAGGCGGCGCACCACCTCGTGTTCCCCATGGA 120
consensus_8802#1 ------------------------------------------------------------
consensus_8802#0 TCTCGACTCGGCCGCGGCGGCGGCTGCGGCGGCGGCGCACCACCAGCAGCAGCAGCAGCA 180
consensus_8802#1 ------------------------------------------------------------
consensus_8802#0 GACCACGTCCCAGGACAAGCTGAAAGCATTGGCTTATGAGTACGGTCATGAGTTCCGAGT 240
consensus_8802#1 ------------------------------------------------------------
consensus_8802#0 ATTTTCAAGTGTAACATTTGAGTCAATGACTAGCAACTTGCCCGCAGCAGATCAGGAGGA 300
consensus_8802#1 ------------------------------------------------------------
consensus_8802#0 AGATGATGACTTTTATGAGCTTCAGCCTGCTGACTATTTCAACTTGGTTTCGAACAGAAT 360
consensus_8802#1 ------------------------------------------------------------
consensus_8802#0 AGGAGAACAATCGAAAGTTTTGAAGACTCGTAAAATGCGTGAAGCAGAACTTGCTGCCCA 420
consensus_8802#1 ------------------------------------------------------------
consensus_8802#0 ACGAGCAAAGATAAAAAAGGCAGTAATGAGGGTGCGATTCCCTGATGGATACATACTTGA 480
consensus_8802#1 ------------------------------------------------------------
consensus_8802#0 GGCCGATTTTCATCCGTCAGAAACAGTTCAAAGTCTGATGGATTTTCTGAAGAAAGTAAT 540
consensus_8802#1 ------------------------------------------------------------
consensus_8802#0 CTCTAGACCAGACCTGCCATTCTATCTCTATACAGTTCCACCAAAGAAGCGGATAAAAGA 600
consensus_8802#1 ------------------------------------------------------------
consensus_8802#0 CACTTCACTGGATTTCTACACAATTGGTTTTGTTCCTGGGGCTAATGTCTACTTCTCTTA 660
consensus_8802#1 ------------------------------------------------------------
consensus_8802#0 TGATCTGCCGGAAGGCTCAGAGTTAAATACAGACAGTGTAAAATCAGGACCTTATCTCCG 720
consensus_8802#1 ---------------------------------CAGTGTAAAATCAGGACCTTATCTCCG 27
***************************
consensus_8802#0 TGAAGAAATTCGGATGTTGGATGGACTACCAATTGTCCAAGAACCTGTGCACCAACCAAT 780
consensus_8802#1 TGAAGAAATTCGGATGTTGGATGGACTACCAATTGTCCAAGAACCTGTGCACCAACCAAT 87
************************************************************
consensus_8802#0 TGATTCTACTATGAACTCTTCTTCTGCTCATCAATCTGATGTGTCTCAATCAGATTTTGC 840
consensus_8802#1 TGATTCTACTATGAACTCTTCTTCTGCTCATCAATCTGATGTGTCTCAATCAGATTTTGC 147
************************************************************
consensus_8802#0 ACCGCCAGCAAACAAGAAACCAGCTAAACCAAAGTGGTTCAAAAGGTGATGATGAGGTGA 900
consensus_8802#1 ACCGCCAGCAAACAAGAAACCAGCTAAACCAAAGTGGTTCAAAAGGTGATGATGAGGTGA 207
************************************************************
consensus_8802#0 GACAGTCAGGGCGCCAAGAATGCACCACCAGAGGACGACTCTAATGTAGGGGGATAGAGA 960
consensus_8802#1 GACAGTCAGGGCGCCAAGAATGCACCACCAGAGGACGACTCTAATGTAGGGGGATAGAGA 267
************************************************************
consensus_8802#0 GTGAAAGCATGACAATAATGGGTTGCTGTTGGCTTTCTTGATGGATGGATACACATTGTA 1020
consensus_8802#1 GTGAAAGCATGACAATAATGGGTTGCTGTTGGCTTTCTTGATGGATGGATACACATTGTA 327
************************************************************
consensus_8802#0 AAATGAAACTTTCCAAAGAAATTTCACGAGTGCTGCAGAATGATTTTTTGCGTCTGATAG 1080
consensus_8802#1 AAATGAAACTTTCCAAAGAAATTTCACGAGTGCTGCAGAATGATTTTTTGCGTCTGATAG 387
************************************************************
consensus_8802#0 CACTGCATTACACTGTACACTCCGTTGCTAACAAAGCCTCCCTTTTCCTGAGTGCATATG 1140
consensus_8802#1 CACTGCATTACACTGTACACTCCGTTGCTAACAAAGCCTCCCTTTTCCTGAAAAAAAAAA 447
*************************************************** * *
consensus_8802#0 GCTGGGGGTGTTTGGTTGATTGCTTCACTTTGTCACGCCACACTTCAGTCATGCCACAGT 1200
consensus_8802#1 AAAAAAAAAAAATG----------TCATGCCGTTACGTAGCGTATCGTTGAC-------- 489
** *** ** *** * ** * *
consensus_8802#0 TTGTAGATGTGTGTTTGTTTCAATGCCACAGTTGTGTCATGCC 1243
consensus_8802#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||