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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1350 fasta sequence
[GAGAGACTCACCGCGGCAGAGTTGAGTACTCGCCGACGACGAGGCCGGCGGCTGCGCGCCACCTCGCCGTTTCCCTCTCCGCCGCATCCACACGACGACACATGGCCTCCGCCGCCGCCGCCGCCGACCCCGGCGCGGCGTACAAGCTCCTCCTCTCCTGCCCCGCCGGCCTCCCCAGATCCCGCGTTTCGGTTAAATTTGATCAGTCATTCGATCGGATTCCCCATCCGGATGCAGCCTTGGAAGAATCAATAAGTGTGATATGGAACCAGAGACTTAAGCAGAACCCGTCGTCGTACAGCGGCACAAAATTTCGGTATGGAGGACACGCTGTGCACTACAAAGATGAACCAAATAAGGAGTATTGTGTTTCACTTCATTTGGGTCTCACAGATTACAGCACATTTGTGGGAACAAATCTTAATCCATTGTGGGAGAAATTTTTGGTCCCATCTGAAGATGATTCTGTGCATTGCCAACACATGTCGAATCCACTGGGAAATGGTGCAATTGTTCAAACATCTGATGAAAAGATCATCGTATTGCAAAGAAGCTACAATGTTGGGGAGTTTCCAGGTTACTTTGTTTTTCCTGGAGGACATTCCGAGCCACAAGAAATTGGAATCTTGGCACATCAAACTGATGAAAAGGACCTTGCTGTTCTCAACGAAAGAGTTTCCCAAGAGATGTTTGATGGAATCATCCGTGAGGTAGTTGAGGAAACTGGAGTGCCTTCTAATTCACTGACAGAGCCTGTCTTCATTGGAATTTCTCGCCGGGAGATGAATGTTAGGCCAACTGCATTCTTTTTTACAAAATGCAACATAGATTCAGGTGGAGTGCATGAATTATATTCTAGAGCTCAAGATGGTTTTGAATCTACAAAGATGTATGCAGTCTCAGAGGAAGAGCTACTAGGAATGACCGACCGAATGCCTGGTTGCCACCGTGGTGGCTTTGCTCTCTATGAAATGATGAAGACTGCTGCCAAAAAATCATGAAAATGAACAATAGTGATATTGAATTCTTCTCTAATATCATAAAATAAACAGGGAGAGAGATTGGCGTCACAAGAAAACAATACAGTAGTTACTCCTTTTCTCTGGAGCTGATGCATTTTCTTTCCCCTTGTTGCACTGAGAGTTTTTCAGTACAAGTGCGGAAGAAATAAGTTCTTATTTACATTCTCAATTTATTTTTTTATTTTTTTATCCTACATTCTCACTTTGTTGCTTGGAATTGATGTTGTAATTGAGACCATCGCACTCGTGACATGATTTCTATCTAATCAAAATTCTTTCAAAAAAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTAT]
[+] EMBL AK073223 [GAGAGACTCACCGCGGCAGAGTTGAGTACTCGCCGACGACGAGGCCGGCGGCTGCGCGCCACCTCGCCGTTTCCCTCTCCGCCGCATCCACACGACGACACATGGCCTCCGCCGCCGCCGCCGCCGACCCCGGCGCGGCGTACAAGCTCCTCCTCTCCTGCCCCGCCGGCCTCCCCAGATCCCGCGTTTCGGTTAAATTTGATCAGTCATTCGATCGGATTCCCCATCCGGATGCAGCCTTGGAAGAATCAATAAGTGTGATATGGAACCAGAGACTTAAGCAGAACCCGTCGTCGTACAGCGGCACAAAATTTCGGTATGGAGGACACGCTGTGCACTACAAAGATGAACCAAATAAGGAGTATTGTGTTTCACTTCATTTGGGTCTCACAGATTACAGCACATTTGTGGGAACAAATCTTAATCCATTGTGGGAGAAATTTTTGGTCCCATCTGAAGATGATTCTGTGCATTGCCAACACATGTCGAATCCACTGGGAAATGGTGCAATTGTTCAAACATCTGATGAAAAGATCATCGTATTGCAAAGAAGCTACAATGTTGGGGAGTTTCCAGGTTACTTTGTTTTTCCTGGAGGACATTCCGAGCCACAAGAAATTGGAATCTTGGCACATCAAACTGATGAAAAGGACCTTGCTGTTCTCAACGAAAGAGTTTCCCAAGAGATGTTTGATGGAATCATCCGTGAGGTAGTTGAGGAAACTGGAGTGCCTTCTAATTCACTGACAGAGCCTGTCTTCATTGGAATTTCTCGCCGGGAGATGAATGTTAGGCCAACTGCATTCTTTTTTACAAAATGCAACATAGATTCAGGTGGAGTGCATGAATTATATTCTAGAGCTCAAGATGGTTTTGAATCTACAAAGATGTATGCAGTCTCAGAGGAAGAGCTACTAGGAATGACCGACCGAATGCCTGGTTGCCACCGTGGTGGCTTTGCTCTCTATGAAATGATGAAGACTGCTGCCAAAAAATCATGAAAATGAACAATAGTGATATTGAATTCTTCTCTAATATCATAAAATAAACAGGGAGAGAGATTGGCGTCACAAGAAAACAATACAGTAGTTACTCCTTTTCTCTGGAGCTGATGCATTTTCTTTCCCCTTGTTGCACTGAGAGTTTTTCAGTACAAGTGCGGAAGAAATAAGTTCTTATTTACATTCTCAATTTATTTTTTTATTTTTTTATCCTACATTCTCACTTTGTTGCTTGGAATTGATGTTGTAATTGAGACCATCGCACTCGTGACATGATTTCTATCTAATCAAAATTCTTTCA ]
[+] EMBL CA767396 [ GAACCAGAGACTTAAGCAGAACCCGTCGTCGTACAGCGGCACAAAATTTCGGTATGGAGGACACGCTGTGCACTACAAAGATGAACCAAATAAGGAGTATTGTGTTTCACTTCATTTGGGTCTCACAGATTACAGCACATTTGTGGGAACAAATCTTAATCCATTGTGGGAGAAATTTTTGGTCCCATCTGAAGATGATTCTGTGCATTGCCAACACATGTCGAATCCACTGGGAAATGGTGCAATTGTTCAAACATCTGATGAAAAGATCATCGTATTGCAAAGAAGCTACAATGTTGGGGAGTTTCCAGGTTACTTTGTTTTTCCTGGAGGACATTCCGAGCCACAAGAAATTGGAATCTTGGCACATCAAACTGATGAAAAGGACCTTGCTGTTCTCAACGAAAGAGTTTCCCAAGAGATGTTTGATGGAATCATCCGTGAGGTAGTTGAGGAAACTGGAGTGCCTTCTAATTCACTGACAGAGCCTGTCTTCATTGGAATTTCTCGCCGGGAGATGAATGTTAGGCCAACTGCATTCTTTTTTACAAAATGCAACATAGATTCAGGTGGAGTGCATGAATTATATTCTAGAGCTCAAGATGGTTTTGAATCTACAAAGATGTATGCAGTCTCAGAGGAAGAGCTACTAGGAATGACCGACCGAATGCCTGGTTGNCACCGTGGTGGCTTTGCTCTCTATGAAATGATGAAGACTGCTGCCAAAAAATCATG AAATGAACAATAGGGATATTGAATTCTTCTCTAA ]
[+] EMBL CF332335 [ TAATTCACTGACAGAGCCTGTCTTCATTGGAATTTCTCGCCGGGAGATGAATGTTAGGCCAACTGCATTCTTTTTTACAAAATGCAACATAGATTCAGGTGGAGTGCATGAATTATATTCTAGAGCTCAAGATGGTTTTGAATCTACAAAGATGTATGCAGTCTCAGAGGAAGAGCTACTAGGAATGACCGACCGAATGCCTGGTTGCCACCGTGGTGGCTTTGCTCTCTATGAAATGATGAAGACTGCTGCCAAAAAATCATGAAAATGAACAATAGTGATATTGAATTCTTCTCTAATATCATAAAATAAACAGGGAGAGAGATTGGCGTCACAAGAAAACAATACAGTAGTTACTCCTTTTCTCTGGAGCTGATGCATTTTCTTTCCCCTTGTTGCACTGAGAGTTTTTCAGTACAAGTGCGGAAGAAATAAGTTCTTATTTACATTCTCAATTTATTTTTTTATTTTTTTATCCTACATTCTCACTTTGTTGCTTGGAATTGATGTTGTAATTGAGACCATCGCACTCGTGACATGATTTCTATCTA ]
[-] EMBL CF332336 [ TTCTCGCCGGGAGATGAATGTTAGGCCAACTGCATTCTTTTTTACAAAATGCAACATAGATTCAGGTGGAGTGCATGAATTATATTCTAGAGCTCAAGATGGTTTTGAATCTACAAAGATGTATGCAGTCTCAGAGGAAGAGCTACTAGGAATGACCGACCGAATGCCTGGTTGCCACCGTGGTGGCTTTGCTCTCTATGAAATGATGAAGACTGCTGCCAAAAAATCATGAAAATGAACAATAGTGATATTGAATTCTTCTCTAATATCATAAAATAAACAGGGAGAGAGATTGGCGTCACAAGAAAACAATACAGTAGTTACTCCTTTTCTCTGGAGCTGATGCATTTTCTTTCCCCTTGTTGCACTGAGAGTTTTTCAGTACAAGTGCGGAAGAAATAAGTTCTTATTTACATTCTCAATTTATTTTTTTATTTTTTTATCCTACATTCTCACTTTGTTGCTTGGAATTGATGTTGTAATTGAGACCATCGCACTCGTGACATGATTTCTATCTAATCAAAATTCTTTCAAAAAAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTAT]
consensusID : consensus_8805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[TTCTTTTTTTTTTGGAAACCGAATTAGCAGCACAATTTGATCCCCATGTGGCTTTAGGATTCCTCTCCCACAAATTGTATGTTTGAATCACAGGAAGAGCTACTAGGAATGACCGACCGAATGCCTGGTTGCCACCGTGGTGGCTTTGCTCTCTATGAAATGATGAAGACTGCTGCCAAAAAATCATGAAAATGAACAATAGTGATGTAAGTGCGCATTCAGATCATCTTATGCCAAACACAAACATGATGTTGCAAAGCTGCGGTGGGCAAAAGAGGAAATCAATCGAGCATCTCCCTTTTCAACCATCCATTGTTGACAATCATCATTTTCCACTGCTTAATTGAGATCATCGCAGACATTCCTAATGTGCCTATTTGATCTTCTTCTGCAGATTGAATTCTTCTCTAATATCATAAAATAAACAGGGAGAGAGATTGGCGTCACAAGAAAACAATACAGTAGTTACTCCTTTTCTCTGGAGCTGATGCATTTTCTTTCCCCTTGTTGCACTGAGAGTTTTTCAGTACAAGTGCGGAAGAAATAAGTTCTTATTTACATTCTCAATTTATTTTTTTATCCTACATTCTCACTTTGTTGCTTGGAATTGATGTTGTAATTGAGACCATCGCACTCGTGACATGATTTCTATCTNATCANAATTCTTTCAGTTTCAGATGTTTAATGGTTACTA]
[+] EMBL CA763329 [TTCTTTTTTTTTTGGAAACCGAATTAGCAGCACAATTTGATCCCCATGTGGCTTTAGGATTCCTCTCCCACAAATTGTATGTTTGAATCACAGGAAGAGCTACTAGGAATGACCGACCGAATGCCTGGTTGCCACCGTGGTGGCTTTGCTCTCTATGAAATGATGAAGACTGCTGCCAAAAAATCATGAAAATGAACAATAGTGATGTAAGTGCGCATTCAGATCATCTTATGCCAAACACAAACATGATGTTGCAAAGCTGCGGTGGGCAAAAGAGGAAATCAATCGAGCATCTCCCTTTTCAACCATCCATTGTTGACAATCATCATTTTCCACTGCTTAATTGAGATCATCGCAGACATTCCTAATGTGCCTATTTGATCTTCTTCTGCAGATTGAATTCTTCTCTAATATCATAAAATAAACAGGGAGAGAGATTGGCGTCACAAGAAAACAATACAGTAGTTACTCCTTTTCTCTGGAGCTGATGCATTTTCTTTCCCCTTGTTGCACTGAGAGTTTTTCAGTACAAGTGCGGAAGAAATAAGTTCTTATTTACATTCTCAATTTATTTTTTTATCCTACATTCTCACTTTGTTGCTTGGAATTGATGTTGTAATTGAGACCATCGCACTCGTGACATGATTTCTATCTNATCANAATTCTTTCAGTTTCAGATGTTTAATGGTTACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8805#0 GAGAGACTCACCGCGGCAGAGTTGAGTACTCGCCGACGACGAGGCCGGCGGCTGCGCGCC 60
consensus_8805#1 ------------------------------------------------------------
consensus_8805#0 ACCTCGCCGTTTCCCTCTCCGCCGCATCCACACGACGACACATGGCCTCCGCCGCCGCCG 120
consensus_8805#1 ------------------------------------------------------------
consensus_8805#0 CCGCCGACCCCGGCGCGGCGTACAAGCTCCTCCTCTCCTGCCCCGCCGGCCTCCCCAGAT 180
consensus_8805#1 ------------------------------------------------------------
consensus_8805#0 CCCGCGTTTCGGTTAAATTTGATCAGTCATTCGATCGGATTCCCCATCCGGATGCAGCCT 240
consensus_8805#1 ------------------------------------------------------------
consensus_8805#0 TGGAAGAATCAATAAGTGTGATATGGAACCAGAGACTTAAGCAGAACCCGTCGTCGTACA 300
consensus_8805#1 ------------------------------------------------------------
consensus_8805#0 GCGGCACAAAATTTCGGTATGGAGGACACGCTGTGCACTACAAAGATGAACCAAATAAGG 360
consensus_8805#1 ------------------------------------------------------------
consensus_8805#0 AGTATTGTGTTTCACTTCATTTGGGTCTCACAGATTACAGCACATTTGTGGGAACAAATC 420
consensus_8805#1 ------------------------------------------------------------
consensus_8805#0 TTAATCCATTGTGGGAGAAATTTTTGGTCCCATCTGAAGATGATTCTGTGCATTGCCAAC 480
consensus_8805#1 ------------------------------------------------------------
consensus_8805#0 ACATGTCGAATCCACTGGGAAATGGTGCAATTGTTCAAACATCTGATGAAAAGATCATCG 540
consensus_8805#1 ------------------------------------------------------------
consensus_8805#0 TATTGCAAAGAAGCTACAATGTTGGGGAGTTTCCAGGTTACTTTGTTTTTCCTGGAGGAC 600
consensus_8805#1 ------------------------------------------------------------
consensus_8805#0 ATTCCGAGCCACAAGAAATTGGAATCTTGGCACATCAAACTGATGAAAAGGACCTTGCTG 660
consensus_8805#1 -TTCTTTTTTTTTTGGAAACCGAA--TTAGCAGCACAATTTGATCC------CCATGTGG 51
*** * ** *** ** *** *** **** ** ** *
consensus_8805#0 TTCTCAACGAAAGAGTTTCCCAAGAGATGTTTGATGGAATCATCCGTGAGGTAGTTGAGG 720
consensus_8805#1 CTTTA---GGATTCCTCTCCCACAAATTGTATGTTTGAATCACAGGAAGAGCTACTAGGA 108
* * * * * ***** * *** ** * ****** * * * *
consensus_8805#0 AAACTGGAGTGCCTTCTAATTCACTGACAGAGCCTGTCTTCATTGGAATTTCTCGCCGGG 780
consensus_8805#1 ATGACCGACCGAATGCCTGGTTGCCACCGTGG-----------TGGCTTTGCTCTCTATG 157
* ** * * * * * * * *** ** *** * *
consensus_8805#0 AGATGAATGTTAGGCCAACTGCATTCTTTTTTACAAAATG--CAACATAGATTCAGGTGG 838
consensus_8805#1 AAATGA---TGAAGACTGCTGCCAAAAAATCATGAAAATGAACAATAGTGATGTAAGTGC 214
* **** * * * * **** * ****** *** * *** * ***
consensus_8805#0 AGTGCATGAATTATATTCTAGAGCTCAAGATGGTTTTGAATCTACAAAGATGTATGCAGT 898
consensus_8805#1 -GCATTCAGATCATCTTAT---GCCAAACACAAACATGATGTTGCAAAGCTGCG-GTGGG 269
* ** ** ** * ** ** * *** * ***** ** * *
consensus_8805#0 CTCAGAGGAAGAGCTACTAGGAATGACCGAC--CGAATGCCTGGTTGCCACCGTGGTGGC 956
consensus_8805#1 CAAAAGAGGAAATCAATCGAGCATCTCCCTTTTCAACCATCCATTGTTGACAATCATCAT 329
* * * * * * * * ** ** * * * * ** * *
consensus_8805#0 TTTGCTCT--CTA--TGAAATGATGAAGACTGCTGCCAAAAAATCATGAAAATGAACAAT 1012
consensus_8805#1 TTTCCACTGCTTAATTGAGATCATCGCAGACATTCCTAATGTGCCTATTTGATCTTCTTC 389
*** * ** ** *** ** ** * * ** * ** *
consensus_8805#0 AGTGATATTGAATTCTTCTCTAATATCATAAAATAAACAGGGAGAGAGATTGGCGTCACA 1072
consensus_8805#1 TGCAG-ATTGAATTCTTCTCTAATATCATAAAATAAACAGGGAGAGAGATTGGCGTCACA 448
* ******************************************************
consensus_8805#0 AGAAAACAATACAGTAGTTACTCCTTTTCTCTGGAGCTGATGCATTTTCTTTCCCCTTGT 1132
consensus_8805#1 AGAAAACAATACAGTAGTTACTCCTTTTCTCTGGAGCTGATGCATTTTCTTTCCCCTTGT 508
************************************************************
consensus_8805#0 TGCACTGAGAGTTTTTCAGTACAAGTGCGGAAGAAATAAGTTCTTATTTACATTCTCAAT 1192
consensus_8805#1 TGCACTGAGAGTTTTTCAGTACAAGTGCGGAAGAAATAAGTTCTTATTTACATTCTCAAT 568
************************************************************
consensus_8805#0 TTATTTTTTTATTTTTTTATCCTACATTCTCACTTTGTTGCTTGGAATTGATGTTGTAAT 1252
consensus_8805#1 TTATTTTTTTAT--------CCTACATTCTCACTTTGTTGCTTGGAATTGATGTTGTAAT 620
************ ****************************************
consensus_8805#0 TGAGACCATCGCACTCGTGACATGATTTCTATCTAATCAAAATTCTTTCAAAAAAAAAAA 1312
consensus_8805#1 TGAGACCATCGCACTCGTGACATGATTTCTATCTNATCANAATTCTTTCAGTTTCAGATG 680
********************************** **** ********** * *
consensus_8805#0 AAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTAT 1350
consensus_8805#1 TTTAATGGTTACTA------------------------ 694
** * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||