These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1350 fasta sequence [GAGAGACTCACCGCGGCAGAGTTGAGTACTCGCCGACGACGAGGCCGGCGGCTGCGCGCCACCTCGCCGTTTCCCTCTCCGCCGCATCCACACGACGACACATGGCCTCCGCCGCCGCCGCCGCCGACCCCGGCGCGGCGTACAAGCTCCTCCTCTCCTGCCCCGCCGGCCTCCCCAGATCCCGCGTTTCGGTTAAATTTGATCAGTCATTCGATCGGATTCCCCATCCGGATGCAGCCTTGGAAGAATCAATAAGTGTGATATGGAACCAGAGACTTAAGCAGAACCCGTCGTCGTACAGCGGCACAAAATTTCGGTATGGAGGACACGCTGTGCACTACAAAGATGAACCAAATAAGGAGTATTGTGTTTCACTTCATTTGGGTCTCACAGATTACAGCACATTTGTGGGAACAAATCTTAATCCATTGTGGGAGAAATTTTTGGTCCCATCTGAAGATGATTCTGTGCATTGCCAACACATGTCGAATCCACTGGGAAATGGTGCAATTGTTCAAACATCTGATGAAAAGATCATCGTATTGCAAAGAAGCTACAATGTTGGGGAGTTTCCAGGTTACTTTGTTTTTCCTGGAGGACATTCCGAGCCACAAGAAATTGGAATCTTGGCACATCAAACTGATGAAAAGGACCTTGCTGTTCTCAACGAAAGAGTTTCCCAAGAGATGTTTGATGGAATCATCCGTGAGGTAGTTGAGGAAACTGGAGTGCCTTCTAATTCACTGACAGAGCCTGTCTTCATTGGAATTTCTCGCCGGGAGATGAATGTTAGGCCAACTGCATTCTTTTTTACAAAATGCAACATAGATTCAGGTGGAGTGCATGAATTATATTCTAGAGCTCAAGATGGTTTTGAATCTACAAAGATGTATGCAGTCTCAGAGGAAGAGCTACTAGGAATGACCGACCGAATGCCTGGTTGCCACCGTGGTGGCTTTGCTCTCTATGAAATGATGAAGACTGCTGCCAAAAAATCATGAAAATGAACAATAGTGATATTGAATTCTTCTCTAATATCATAAAATAAACAGGGAGAGAGATTGGCGTCACAAGAAAACAATACAGTAGTTACTCCTTTTCTCTGGAGCTGATGCATTTTCTTTCCCCTTGTTGCACTGAGAGTTTTTCAGTACAAGTGCGGAAGAAATAAGTTCTTATTTACATTCTCAATTTATTTTTTTATTTTTTTATCCTACATTCTCACTTTGTTGCTTGGAATTGATGTTGTAATTGAGACCATCGCACTCGTGACATGATTTCTATCTAATCAAAATTCTTTCAAAAAAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTAT] [+] EMBL AK073223 [GAGAGACTCACCGCGGCAGAGTTGAGTACTCGCCGACGACGAGGCCGGCGGCTGCGCGCCACCTCGCCGTTTCCCTCTCCGCCGCATCCACACGACGACACATGGCCTCCGCCGCCGCCGCCGCCGACCCCGGCGCGGCGTACAAGCTCCTCCTCTCCTGCCCCGCCGGCCTCCCCAGATCCCGCGTTTCGGTTAAATTTGATCAGTCATTCGATCGGATTCCCCATCCGGATGCAGCCTTGGAAGAATCAATAAGTGTGATATGGAACCAGAGACTTAAGCAGAACCCGTCGTCGTACAGCGGCACAAAATTTCGGTATGGAGGACACGCTGTGCACTACAAAGATGAACCAAATAAGGAGTATTGTGTTTCACTTCATTTGGGTCTCACAGATTACAGCACATTTGTGGGAACAAATCTTAATCCATTGTGGGAGAAATTTTTGGTCCCATCTGAAGATGATTCTGTGCATTGCCAACACATGTCGAATCCACTGGGAAATGGTGCAATTGTTCAAACATCTGATGAAAAGATCATCGTATTGCAAAGAAGCTACAATGTTGGGGAGTTTCCAGGTTACTTTGTTTTTCCTGGAGGACATTCCGAGCCACAAGAAATTGGAATCTTGGCACATCAAACTGATGAAAAGGACCTTGCTGTTCTCAACGAAAGAGTTTCCCAAGAGATGTTTGATGGAATCATCCGTGAGGTAGTTGAGGAAACTGGAGTGCCTTCTAATTCACTGACAGAGCCTGTCTTCATTGGAATTTCTCGCCGGGAGATGAATGTTAGGCCAACTGCATTCTTTTTTACAAAATGCAACATAGATTCAGGTGGAGTGCATGAATTATATTCTAGAGCTCAAGATGGTTTTGAATCTACAAAGATGTATGCAGTCTCAGAGGAAGAGCTACTAGGAATGACCGACCGAATGCCTGGTTGCCACCGTGGTGGCTTTGCTCTCTATGAAATGATGAAGACTGCTGCCAAAAAATCATGAAAATGAACAATAGTGATATTGAATTCTTCTCTAATATCATAAAATAAACAGGGAGAGAGATTGGCGTCACAAGAAAACAATACAGTAGTTACTCCTTTTCTCTGGAGCTGATGCATTTTCTTTCCCCTTGTTGCACTGAGAGTTTTTCAGTACAAGTGCGGAAGAAATAAGTTCTTATTTACATTCTCAATTTATTTTTTTATTTTTTTATCCTACATTCTCACTTTGTTGCTTGGAATTGATGTTGTAATTGAGACCATCGCACTCGTGACATGATTTCTATCTAATCAAAATTCTTTCA ] [+] EMBL CA767396 [ GAACCAGAGACTTAAGCAGAACCCGTCGTCGTACAGCGGCACAAAATTTCGGTATGGAGGACACGCTGTGCACTACAAAGATGAACCAAATAAGGAGTATTGTGTTTCACTTCATTTGGGTCTCACAGATTACAGCACATTTGTGGGAACAAATCTTAATCCATTGTGGGAGAAATTTTTGGTCCCATCTGAAGATGATTCTGTGCATTGCCAACACATGTCGAATCCACTGGGAAATGGTGCAATTGTTCAAACATCTGATGAAAAGATCATCGTATTGCAAAGAAGCTACAATGTTGGGGAGTTTCCAGGTTACTTTGTTTTTCCTGGAGGACATTCCGAGCCACAAGAAATTGGAATCTTGGCACATCAAACTGATGAAAAGGACCTTGCTGTTCTCAACGAAAGAGTTTCCCAAGAGATGTTTGATGGAATCATCCGTGAGGTAGTTGAGGAAACTGGAGTGCCTTCTAATTCACTGACAGAGCCTGTCTTCATTGGAATTTCTCGCCGGGAGATGAATGTTAGGCCAACTGCATTCTTTTTTACAAAATGCAACATAGATTCAGGTGGAGTGCATGAATTATATTCTAGAGCTCAAGATGGTTTTGAATCTACAAAGATGTATGCAGTCTCAGAGGAAGAGCTACTAGGAATGACCGACCGAATGCCTGGTTGNCACCGTGGTGGCTTTGCTCTCTATGAAATGATGAAGACTGCTGCCAAAAAATCATG AAATGAACAATAGGGATATTGAATTCTTCTCTAA ] [+] EMBL CF332335 [ TAATTCACTGACAGAGCCTGTCTTCATTGGAATTTCTCGCCGGGAGATGAATGTTAGGCCAACTGCATTCTTTTTTACAAAATGCAACATAGATTCAGGTGGAGTGCATGAATTATATTCTAGAGCTCAAGATGGTTTTGAATCTACAAAGATGTATGCAGTCTCAGAGGAAGAGCTACTAGGAATGACCGACCGAATGCCTGGTTGCCACCGTGGTGGCTTTGCTCTCTATGAAATGATGAAGACTGCTGCCAAAAAATCATGAAAATGAACAATAGTGATATTGAATTCTTCTCTAATATCATAAAATAAACAGGGAGAGAGATTGGCGTCACAAGAAAACAATACAGTAGTTACTCCTTTTCTCTGGAGCTGATGCATTTTCTTTCCCCTTGTTGCACTGAGAGTTTTTCAGTACAAGTGCGGAAGAAATAAGTTCTTATTTACATTCTCAATTTATTTTTTTATTTTTTTATCCTACATTCTCACTTTGTTGCTTGGAATTGATGTTGTAATTGAGACCATCGCACTCGTGACATGATTTCTATCTA ] [-] EMBL CF332336 [ TTCTCGCCGGGAGATGAATGTTAGGCCAACTGCATTCTTTTTTACAAAATGCAACATAGATTCAGGTGGAGTGCATGAATTATATTCTAGAGCTCAAGATGGTTTTGAATCTACAAAGATGTATGCAGTCTCAGAGGAAGAGCTACTAGGAATGACCGACCGAATGCCTGGTTGCCACCGTGGTGGCTTTGCTCTCTATGAAATGATGAAGACTGCTGCCAAAAAATCATGAAAATGAACAATAGTGATATTGAATTCTTCTCTAATATCATAAAATAAACAGGGAGAGAGATTGGCGTCACAAGAAAACAATACAGTAGTTACTCCTTTTCTCTGGAGCTGATGCATTTTCTTTCCCCTTGTTGCACTGAGAGTTTTTCAGTACAAGTGCGGAAGAAATAAGTTCTTATTTACATTCTCAATTTATTTTTTTATTTTTTTATCCTACATTCTCACTTTGTTGCTTGGAATTGATGTTGTAATTGAGACCATCGCACTCGTGACATGATTTCTATCTAATCAAAATTCTTTCAAAAAAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTAT] consensusID : consensus_8805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [TTCTTTTTTTTTTGGAAACCGAATTAGCAGCACAATTTGATCCCCATGTGGCTTTAGGATTCCTCTCCCACAAATTGTATGTTTGAATCACAGGAAGAGCTACTAGGAATGACCGACCGAATGCCTGGTTGCCACCGTGGTGGCTTTGCTCTCTATGAAATGATGAAGACTGCTGCCAAAAAATCATGAAAATGAACAATAGTGATGTAAGTGCGCATTCAGATCATCTTATGCCAAACACAAACATGATGTTGCAAAGCTGCGGTGGGCAAAAGAGGAAATCAATCGAGCATCTCCCTTTTCAACCATCCATTGTTGACAATCATCATTTTCCACTGCTTAATTGAGATCATCGCAGACATTCCTAATGTGCCTATTTGATCTTCTTCTGCAGATTGAATTCTTCTCTAATATCATAAAATAAACAGGGAGAGAGATTGGCGTCACAAGAAAACAATACAGTAGTTACTCCTTTTCTCTGGAGCTGATGCATTTTCTTTCCCCTTGTTGCACTGAGAGTTTTTCAGTACAAGTGCGGAAGAAATAAGTTCTTATTTACATTCTCAATTTATTTTTTTATCCTACATTCTCACTTTGTTGCTTGGAATTGATGTTGTAATTGAGACCATCGCACTCGTGACATGATTTCTATCTNATCANAATTCTTTCAGTTTCAGATGTTTAATGGTTACTA] [+] EMBL CA763329 [TTCTTTTTTTTTTGGAAACCGAATTAGCAGCACAATTTGATCCCCATGTGGCTTTAGGATTCCTCTCCCACAAATTGTATGTTTGAATCACAGGAAGAGCTACTAGGAATGACCGACCGAATGCCTGGTTGCCACCGTGGTGGCTTTGCTCTCTATGAAATGATGAAGACTGCTGCCAAAAAATCATGAAAATGAACAATAGTGATGTAAGTGCGCATTCAGATCATCTTATGCCAAACACAAACATGATGTTGCAAAGCTGCGGTGGGCAAAAGAGGAAATCAATCGAGCATCTCCCTTTTCAACCATCCATTGTTGACAATCATCATTTTCCACTGCTTAATTGAGATCATCGCAGACATTCCTAATGTGCCTATTTGATCTTCTTCTGCAGATTGAATTCTTCTCTAATATCATAAAATAAACAGGGAGAGAGATTGGCGTCACAAGAAAACAATACAGTAGTTACTCCTTTTCTCTGGAGCTGATGCATTTTCTTTCCCCTTGTTGCACTGAGAGTTTTTCAGTACAAGTGCGGAAGAAATAAGTTCTTATTTACATTCTCAATTTATTTTTTTATCCTACATTCTCACTTTGTTGCTTGGAATTGATGTTGTAATTGAGACCATCGCACTCGTGACATGATTTCTATCTNATCANAATTCTTTCAGTTTCAGATGTTTAATGGTTACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8805#0 GAGAGACTCACCGCGGCAGAGTTGAGTACTCGCCGACGACGAGGCCGGCGGCTGCGCGCC 60 consensus_8805#1 ------------------------------------------------------------ consensus_8805#0 ACCTCGCCGTTTCCCTCTCCGCCGCATCCACACGACGACACATGGCCTCCGCCGCCGCCG 120 consensus_8805#1 ------------------------------------------------------------ consensus_8805#0 CCGCCGACCCCGGCGCGGCGTACAAGCTCCTCCTCTCCTGCCCCGCCGGCCTCCCCAGAT 180 consensus_8805#1 ------------------------------------------------------------ consensus_8805#0 CCCGCGTTTCGGTTAAATTTGATCAGTCATTCGATCGGATTCCCCATCCGGATGCAGCCT 240 consensus_8805#1 ------------------------------------------------------------ consensus_8805#0 TGGAAGAATCAATAAGTGTGATATGGAACCAGAGACTTAAGCAGAACCCGTCGTCGTACA 300 consensus_8805#1 ------------------------------------------------------------ consensus_8805#0 GCGGCACAAAATTTCGGTATGGAGGACACGCTGTGCACTACAAAGATGAACCAAATAAGG 360 consensus_8805#1 ------------------------------------------------------------ consensus_8805#0 AGTATTGTGTTTCACTTCATTTGGGTCTCACAGATTACAGCACATTTGTGGGAACAAATC 420 consensus_8805#1 ------------------------------------------------------------ consensus_8805#0 TTAATCCATTGTGGGAGAAATTTTTGGTCCCATCTGAAGATGATTCTGTGCATTGCCAAC 480 consensus_8805#1 ------------------------------------------------------------ consensus_8805#0 ACATGTCGAATCCACTGGGAAATGGTGCAATTGTTCAAACATCTGATGAAAAGATCATCG 540 consensus_8805#1 ------------------------------------------------------------ consensus_8805#0 TATTGCAAAGAAGCTACAATGTTGGGGAGTTTCCAGGTTACTTTGTTTTTCCTGGAGGAC 600 consensus_8805#1 ------------------------------------------------------------ consensus_8805#0 ATTCCGAGCCACAAGAAATTGGAATCTTGGCACATCAAACTGATGAAAAGGACCTTGCTG 660 consensus_8805#1 -TTCTTTTTTTTTTGGAAACCGAA--TTAGCAGCACAATTTGATCC------CCATGTGG 51 *** * ** *** ** *** *** **** ** ** * consensus_8805#0 TTCTCAACGAAAGAGTTTCCCAAGAGATGTTTGATGGAATCATCCGTGAGGTAGTTGAGG 720 consensus_8805#1 CTTTA---GGATTCCTCTCCCACAAATTGTATGTTTGAATCACAGGAAGAGCTACTAGGA 108 * * * * * ***** * *** ** * ****** * * * * consensus_8805#0 AAACTGGAGTGCCTTCTAATTCACTGACAGAGCCTGTCTTCATTGGAATTTCTCGCCGGG 780 consensus_8805#1 ATGACCGACCGAATGCCTGGTTGCCACCGTGG-----------TGGCTTTGCTCTCTATG 157 * ** * * * * * * * *** ** *** * * consensus_8805#0 AGATGAATGTTAGGCCAACTGCATTCTTTTTTACAAAATG--CAACATAGATTCAGGTGG 838 consensus_8805#1 AAATGA---TGAAGACTGCTGCCAAAAAATCATGAAAATGAACAATAGTGATGTAAGTGC 214 * **** * * * * **** * ****** *** * *** * *** consensus_8805#0 AGTGCATGAATTATATTCTAGAGCTCAAGATGGTTTTGAATCTACAAAGATGTATGCAGT 898 consensus_8805#1 -GCATTCAGATCATCTTAT---GCCAAACACAAACATGATGTTGCAAAGCTGCG-GTGGG 269 * ** ** ** * ** ** * *** * ***** ** * * consensus_8805#0 CTCAGAGGAAGAGCTACTAGGAATGACCGAC--CGAATGCCTGGTTGCCACCGTGGTGGC 956 consensus_8805#1 CAAAAGAGGAAATCAATCGAGCATCTCCCTTTTCAACCATCCATTGTTGACAATCATCAT 329 * * * * * * * * ** ** * * * * ** * * consensus_8805#0 TTTGCTCT--CTA--TGAAATGATGAAGACTGCTGCCAAAAAATCATGAAAATGAACAAT 1012 consensus_8805#1 TTTCCACTGCTTAATTGAGATCATCGCAGACATTCCTAATGTGCCTATTTGATCTTCTTC 389 *** * ** ** *** ** ** * * ** * ** * consensus_8805#0 AGTGATATTGAATTCTTCTCTAATATCATAAAATAAACAGGGAGAGAGATTGGCGTCACA 1072 consensus_8805#1 TGCAG-ATTGAATTCTTCTCTAATATCATAAAATAAACAGGGAGAGAGATTGGCGTCACA 448 * ****************************************************** consensus_8805#0 AGAAAACAATACAGTAGTTACTCCTTTTCTCTGGAGCTGATGCATTTTCTTTCCCCTTGT 1132 consensus_8805#1 AGAAAACAATACAGTAGTTACTCCTTTTCTCTGGAGCTGATGCATTTTCTTTCCCCTTGT 508 ************************************************************ consensus_8805#0 TGCACTGAGAGTTTTTCAGTACAAGTGCGGAAGAAATAAGTTCTTATTTACATTCTCAAT 1192 consensus_8805#1 TGCACTGAGAGTTTTTCAGTACAAGTGCGGAAGAAATAAGTTCTTATTTACATTCTCAAT 568 ************************************************************ consensus_8805#0 TTATTTTTTTATTTTTTTATCCTACATTCTCACTTTGTTGCTTGGAATTGATGTTGTAAT 1252 consensus_8805#1 TTATTTTTTTAT--------CCTACATTCTCACTTTGTTGCTTGGAATTGATGTTGTAAT 620 ************ **************************************** consensus_8805#0 TGAGACCATCGCACTCGTGACATGATTTCTATCTAATCAAAATTCTTTCAAAAAAAAAAA 1312 consensus_8805#1 TGAGACCATCGCACTCGTGACATGATTTCTATCTNATCANAATTCTTTCAGTTTCAGATG 680 ********************************** **** ********** * * consensus_8805#0 AAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTAT 1350 consensus_8805#1 TTTAATGGTTACTA------------------------ 694 ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||