Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8807 cluster # 8807       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8807#0 length = 1504 sequences # 5  

consensusID : consensus_8807#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1504
fasta sequence
                              [CTGAGTCTCTGAAATCCTGAAGCTTCTTCTTCTTCTTCCTTCCTCCTCTTGCTCTCTTGCTCTTCCTATGCTAGCACTCTCCATGCTCTTCTTGCCCTTGTAGCATTGGCTCCTTGGTTTCCATCCATGGATCCACGCTAAATGCATTGCGAGGCTGCAAATTGGTAGCATTCCCTTCCCCGTTGCATCTGCTGCAACTATGTAAGCAGGAGTGTCTGATTTGACACGCCTGAATACAGCTTCTCAGATCTTCAGTTTTGTTGTTTGTCTGAGAAAAGGAGAGAGAGAGAGGCCTCTTTTGGGTCCAAGAAG-AGAAAAATGGAGGAGAGCTTCGTGCCCCTCCGTGGCATCAAGAAC-GACCTCCATGGGAGGCTCCAGTGCTACAAGCAGGATTGGACCGGAGGATTCCGCGCCGGTATCAGGATCCTTGCGCCGACCACCTACATATTCTTCGCTTCGGCCATACCGGTGATATCGTTCGGAGAGCAATTGGAGAGGAACACTGATGGTGTTCTGACAGCAGTTCAGACATTGGCATCCACTGCACTTTGTGGCATAATCCACTCCTTTCTTGGAGGGCAGCCTCTGCTGATCCTCGGTGTGGCCGAGCCGACGGTGCTCATGTACACATTCATGTTCAACTTTGCCAAGGACAGGCCTGATCTTGGAAGGAGGCTGTTCCTCGCATGGACCGGTTGGGTTTGTGTCTGGACAGCAATTTTGCTGTTCTTGCTGGCGATACTAGGCGCGTGCTCGATCATCAACCGGTTCACCCGCATCGCGGGTGAGCTGTTTGGGCTCCTGATTGCAATGCTCTTCATGCAGCAGGCTATCAAGGGGCTTGTTGACGAGTTCCGCATCCCTGAGAGGGAGAACAGAAAGGCATTAGAGTTTGTTTCATCATGGAGGTTCGCCAACGGAATGTTTGCTATCGTCTTGTCGTTTGGCCTTTTGCTCACTGCACTGCGGAGCAGGAAGGCTCGATCATGGCGCTATGGAACAGGTTGGCTCCGTGGCTTCATCGCCGACTATGGTGTCCCACTGATGGTGCTAGTATGGACAGGAGTTTCCTACATTCCATATGGTAGTGTTCCAAAAGGAATTCCACGGCGCCTTTTCAGCCCCAACCCATGGTCCCCTGGTGCATATGATAATTGGACAGTCATCAGGGACATGCCAAATGTGCCACTCCTCTACATTATTGGTGCCTTCATACCAGCAACGATGATAGCCGTCCTGTACTACTTCGATCACAGTGTTGCTTCTCAGCTTGCTCAGCAGAAGGAGTTCAATTTGAGGAAGCCCCCATCTTTCCATTATGATTTGCTTCTCCTGGGTTTCCTGACATTATTGTGTGGCCTTATTGGTATCCCTCCGGCGAATGGTGTCATTCCACAGTCTCCAATGCATACGAAGAGTTTGGCTACTCTCAAACATCAACTACTCCGTAACCGACTAGTAGCCACAGCCCGACAAAGCATGAGCCAGAATGCGAGCTTGAGCC]

[+] EMBL AK100510             [CTGAGTCTCTGAAATCCTGAAGCTTCTTCTTCTTCTTCCTTCCTCCTCTTGCTCTCTTGCTCTTCCTATGCTAGCACTCTCCATGCTCTTCTTGCCCTTGTAGCATTGGCTCCTTGGTTTCCATCCATGGATCCACGCTAAATGCATTGCGAGGCTGCAAATTGGTAGCATTCCCTTCCCCGTTGCATCTGCTGCAACTATGTAAGCAGGAGTGTCTGATTTGACACGCCTGAATACAGCTTCTCAGATCTTCAGTTTTGTTGTTTGTCTGAGAAAAGGAGAGAGAGAGAGGCCTCTTTTGGGTCCAAGAAG AGAAAAATGGAGGAGAGCTTCGTGCCCCTCCGTGGCATCAAGAAC GACCTCCATGGGAGGCTCCAGTGCTACAAGCAGGATTGGACCGGAGGATTCCGCGCCGGTATCAGGATCCTTGCGCCGACCACCTACATATTCTTCGCTTCGGCCATACCGGTGATATCGTTCGGAGAGCAATTGGAGAGGAACACTGATGGTGTTCTGACAGCAGTTCAGACATTGGCATCCACTGCACTTTGTGGCATAATCCACTCCTTTCTTGGAGGGCAGCCTCTGCTGATCCTCGGTGTGGCCGAGCCGACGGTGCTCATGTACACATTCATGTTCAACTTTGCCAAGGACAGGCCTGATCTTGGAAGGAGGCTGTTCCTCGCATGGACCGGTTGGGTTTGTGTCTGGACAGCAATTTTGCTGTTCTTGCTGGCGATACTAGGCGCGTGCTCGATCATCAACCGGTTCACCCGCATCGCGGGTGAGCTGTTTGGGCTCCTGATTGCAATGCTCTTCATGCAGCAGGCTATCAAGGGGCTTGTTGACGAGTTCCGCATCCCTGAGAGGGAGAACAGAAAGGCATTAGAGTTTGTTTCATCATGGAGGTTCGCCAACGGAATGTTTGCTATCGTCTTGTCGTTTGGCCTTTTGCTCACTGCACTGCGGAGCAGGAAGGCTCGATCATGGCGCTATGGAACAGGTTGGCTCCGTGGCTTCATCGCCGACTATGGTGTCCCACTGATGGTGCTAGTATGGACAGGAGTTTCCTACATTCCATATGGTAGTGTTCCAAAAGGAATTCCACGGCGCCTTTTCAGCCCCAACCCATGGTCCCCTGGTGCATATGATAATTGGACAGTCATCAGGGACATGCCAAATGTGCCACTCCTCTACATTATTGGTGCCTTCATACCAGCAACGATGATAGCCGTCCTTTACTACTTCGATCACAGTGTTGCTTCTCAGCTTGCTCAGCAGAAGGAGTTCAATTTGAGGAAGCCCCCATCTTTCCATTATGATTTGCTTCTCCTGGGTTTCCTGACATTATTGTGTGGCCTTATTGGTATCCCTCCGGCGAATGGTGTCATTCCACAGTCTCCAATGCATACGAAGAGTTTGGCTACTCTCAAACATCAACTACTCCGTAACCGACTAGTAGCCACAGCCCGACAAAGCATGAGCCAGAATGCGAGCTTGAGCC]
[+] EMBL AK070617             [   AGTCTCTGAAATCCTGAAGCTTCTTCTTCTTCTTCCTTCCTCCTCTTGCTCTCTTGCTCTTCCTATGCTAGCACTCTCCATGCTCTTCTTGCCCTTGTAGCATTGGCTCCTTGGTTTCCATCCATGGATCCACGCTAAATGCATTGCGAGGCTGCAAATTGGTAGCATTCCCTTCCCCGTTGCATCTGCTGCAACTATGTAAGCAGGAGTGTCTGATTTGACACGCCTGAATACAGCTTCTCAGATCTTCAGTTTTGTTGTTTGTCTGAGAAAAGGAGAGAGAGAGAGGCCTCTTTTGGGTCCAAGAAG AGAAAAATGGAGGAGAGCTTCGTGCCCCTCCGTGGCATCAAGAAC GACCTCCATGGGAGGCTCCAGTGCTACAAGCAGGATTGGACCGGAGGATTCCGCGCCGGTATCAGGATCCTTGCGCCGACCACCTACATATTCTTCGCTTCGGCCATACCGGTGATATCGTTCGGAGAGCAATTGGAGAGGAACACTGATGGTGTTCTGACAGCAGTTCAGACATTGGCATCCACTGCACTTTGTGGCATAATCCACTCCTTTCTTGGAGGGCAGCCTCTGCTGATCCTCGGTGTGGCCGAGCCGACGGTGCTCATGTACACATTCATGTTCAACTTTGCCAAGGACAGGCCTGATCTTGGAAGGAGGCTGTTCCTCGCATGGACCGGTTGGGTTTGTGTCTGGACAGCAATTTTGCTGTTCTTGCTGGCGATACTAGGCGCGTGCTCGATCATCAACCGGTTCACCCGCATCGCGGGTGAGCTGTTTGGGCTCCTGATTGCAATGCTCTTCATGCAGCAGGCTATCAAGGGGCTTGTTGACGAGTTCCGCATCCCTGAGAGGGAGAACAGAAAGGCATTAGAGTTTGTTTCATCATGGAGGTTCGCCAACGGAATGTTTGCTATCGTCTTGTCGTTTGGCCTTTTGCTCACTGCACTGCGGAGCAGGAAGGCTCGATCATGGCGCTATGGAACAGGTTGGCTCCGTGGCTTCATCGCCGACTATGGTGTCCCACTGATGGTGCTAGTATGGACAGGAGTTTCCTACATTCCATATGGTAGTGTTCCAAAAGGAATTCCACGGCGCCTTTTCAGCCCCAACCCATGGTCCCCTGGTGCATATGATAATTGGACAGTCATCAGGGACATGCCAAATGTGCCACTCCTCTACATTATTGGTGCCTTCATACCAGCAACGATGATAGCCGTCCTGTACTACTTCGATCACAGTGTTGCTTCTCAGCTTGCTCAGCAGAAGGAGTTCAATTTGAGGAAGCCCCCATCTTTCCATTATGATTTGCTTCTCCTGGGTTTCCTGACATTATTGTGTGGCCTTATTGGTATCCCTCCGGCGAATGGTGTCATTCCACAGTCTCCAATGCATACGAAGAGTTTGGCTACTCTCAAACATCAACTACTCCGTAACCGACTAGTAGCCACAGCCCGACAAAGCATGAGCCAGAATGCGAGCTTGAGCC]
[+] EMBL OSS2071A             [                CTGAAGCTTCTTCTTCTTCTTCCTTCCTCCTCTTGCTCTCTTGCTCTTCCTATGCTAGCACTCTCCATGCTCTTCTTGCCCTTGTAGCATTGGCTCCTTGGTTTCCATCCATGGATCCACGCTAAATGCATTGCGAGGCTGCAAATTGGTAGCATTCCCTTCCCCGTTGCATCTGCTGCAACTATGTAAGCAGGAGTGTCTGATTTGACACGCCTGAATACAGCTTCTCAGATCTTCAGTTTTGTTGTTTGTCTGAGAAAAGGAGAGAGAGAGAGGCCTCTTTTGGGTCCAAGAAG AGAAAAATGGAGGAGAGCTTCGTGCCCCTCCGTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL OSS11594A            [                           TCTTCTTCTTCCTTCCTCCTCTTGCTCTCTTGCTCTTCCTATGCTAGCACTCTCCATGCTCTTCTTGCCCTTGTAGCATTGGCTCCTTGGTTTCCATCCATGGATCCACGCTAAATGCATTGCGAGGCTGCAAATTGGTAGCATTCCCTTCCCCGTTGCATCTGCTGCAACTATGTAAGCAGGAGTGTCTGATTTGACACGGCTGAATACAGCTTCTCAGATCTTCAGTTTTGTTGTTTGTCTGAGAAAGGGGGAGAGAGAAAGGCCCTTTTTGGGTCC AGAAGNAG AAAATGGGGGGGANCTNCGTGNCCCTCNGNGGAAT AAGGACGGNCCTCAATGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AY339063             [                                                                                                                                                                                                                                                                                                                                        AGCTTCGTGCCCCTCCGTGGCATCAAGAAC GACCTCCATGGGAGGCTCCAGTGCTACAAGCAGGATTGGACCGGAGGATTCCGCGCCGGTATCAGGATCCTTGCGCCGACCACCTACATATTCTTCGCTTCGGCCATACCGGTGATATCGTTCGGAGAGCAATTGGAGAGGAACACTGATGGTGTTCTGACAGCAGTTCAGACATTGGCATCCACTGCACTTTGTGGCATAATCCACTCCTTTCTTGGAGGGCAGCCTCTGCTGATCCTCGGTGTGGCCGAGCCGACGGTGCTCATGTACACATTCATGTTCAACTTTGCCAAGGACAGGCCTGATCTTGGAAGGAGGCTGTTCCTCGCATGGACCGGTTGGGTTTGTGTCTGGACAGCAATTTTGCTGTTCTTGCTGGCGATACTAGGCGCGTGCTCGATCATCAACCGGTTCACCCGCATCGCGGGTGAGCTGTTTGGGCTCCTGATTGCAATGCTCTTCATGCAGCAGGCTATCAAGGGGCTTGTTGACGAGTTCCGCATCCCTGAGAGGGAGAACAGAAAGGCATTAGAGTTTGTTTCATCATGGAGGTTCGCCAACGGAATGTTTGCTATCGTCTTGTCGTTTGGCCTTTTGCTCACTGCACTGCGGAGCAGGAAGGCTCGATCATGGCGCTATGGAACAGGTTGGCTCCGTGGCTTCATCGCCGACTATGGTGTCCCACTGATGGTGCTAGTATGGACAGGAGTTTCCTACATTCCATATGGTAGTGTTCCAAAAGGAATTCCACGGCGCCTTTTCAGCCCCAACCCATGGTCCCCTGGTGCATATGATAATTGGACAGTCATCAGGGACATGCCAAATGTGCCACTCCTCTACATTATTGGTGCCTTCATACCAGCAACGATGATAGCCGTCCTGTACTACTTCGATCACAGTGTTGCTTCTCAGCTTGCTCAGCAGAAGGAGTTCAATTTGAGGAAGCCCCCATCTTTCCATTATGATTTGCTTCTCCTGGGTTTCCTGACATTATTGTGTGGCCTTATTGGTATCCCTCCGGCGAATGGTGTCATTCCACAGTCTCCAATGCATACGAAGAGTTTGGCTACTCTCAAACATCAACTACTCCGTAACCGACTAGTAGCCACAGCCCGACAAAGCATGAGCCAGAATGCGAGCTTGAGCC]


>consensus_8807#0 CTGAGTCTCTGAAATCCTGAAGCTTCTTCTTCTTCTTCCTTCCTCCTCTTGCTCTCTTGC TCTTCCTATGCTAGCACTCTCCATGCTCTTCTTGCCCTTGTAGCATTGGCTCCTTGGTTT CCATCCATGGATCCACGCTAAATGCATTGCGAGGCTGCAAATTGGTAGCATTCCCTTCCC CGTTGCATCTGCTGCAACTATGTAAGCAGGAGTGTCTGATTTGACACGCCTGAATACAGC TTCTCAGATCTTCAGTTTTGTTGTTTGTCTGAGAAAAGGAGAGAGAGAGAGGCCTCTTTT GGGTCCAAGAAGAGAAAAATGGAGGAGAGCTTCGTGCCCCTCCGTGGCATCAAGAACGAC CTCCATGGGAGGCTCCAGTGCTACAAGCAGGATTGGACCGGAGGATTCCGCGCCGGTATC AGGATCCTTGCGCCGACCACCTACATATTCTTCGCTTCGGCCATACCGGTGATATCGTTC GGAGAGCAATTGGAGAGGAACACTGATGGTGTTCTGACAGCAGTTCAGACATTGGCATCC ACTGCACTTTGTGGCATAATCCACTCCTTTCTTGGAGGGCAGCCTCTGCTGATCCTCGGT GTGGCCGAGCCGACGGTGCTCATGTACACATTCATGTTCAACTTTGCCAAGGACAGGCCT GATCTTGGAAGGAGGCTGTTCCTCGCATGGACCGGTTGGGTTTGTGTCTGGACAGCAATT TTGCTGTTCTTGCTGGCGATACTAGGCGCGTGCTCGATCATCAACCGGTTCACCCGCATC GCGGGTGAGCTGTTTGGGCTCCTGATTGCAATGCTCTTCATGCAGCAGGCTATCAAGGGG CTTGTTGACGAGTTCCGCATCCCTGAGAGGGAGAACAGAAAGGCATTAGAGTTTGTTTCA TCATGGAGGTTCGCCAACGGAATGTTTGCTATCGTCTTGTCGTTTGGCCTTTTGCTCACT GCACTGCGGAGCAGGAAGGCTCGATCATGGCGCTATGGAACAGGTTGGCTCCGTGGCTTC ATCGCCGACTATGGTGTCCCACTGATGGTGCTAGTATGGACAGGAGTTTCCTACATTCCA TATGGTAGTGTTCCAAAAGGAATTCCACGGCGCCTTTTCAGCCCCAACCCATGGTCCCCT GGTGCATATGATAATTGGACAGTCATCAGGGACATGCCAAATGTGCCACTCCTCTACATT ATTGGTGCCTTCATACCAGCAACGATGATAGCCGTCCTGTACTACTTCGATCACAGTGTT GCTTCTCAGCTTGCTCAGCAGAAGGAGTTCAATTTGAGGAAGCCCCCATCTTTCCATTAT GATTTGCTTCTCCTGGGTTTCCTGACATTATTGTGTGGCCTTATTGGTATCCCTCCGGCG AATGGTGTCATTCCACAGTCTCCAATGCATACGAAGAGTTTGGCTACTCTCAAACATCAA CTACTCCGTAACCGACTAGTAGCCACAGCCCGACAAAGCATGAGCCAGAATGCGAGCTTG AGCC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)