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Oryza sativa
cluster # 8813 cluster # 8813       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8813#0 length = 2678 sequences # 5  
consensus_8813#1 length = 440 sequences # 1  

consensusID : consensus_8813#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2678
fasta sequence
                              [TGCAAAAATACCATGTGCATTAAGCACAGCATGCCATCATCTGCACAATAATTGTACAGGACAATACCATGTACTAGCAATTGTACCCTTCATGTTGTAAGGGGACCGTTCAAATTTGTCAAGATTCATCGCAAGATTTGCTAGTACAAAGTGGATAAATTTTCATGGCACTCTGAAGATTATGGCAAAAACTGACCGTTGGTTTGTTGGTTAGTCCTAACATCTAAGTTTGACCAGTTGAGCGGTGGCCACAGCTAGTTTGAATGCTACCAATGTTCATTACATC-AAGCAGATGATCTGATCGGAGATTGGAGGGAG-TTCTCCNTCTTAATCATATCATATCANTTGAGAT-CT-GCATACTATATGTTGGTTCTTGTGCAGANT-AAGC-TCTGGGTTTT-CACAATCCTCCTACCGTTTACCAGTCAAACCTTTAACATGTTGCTGTGCTCTTTTTGTGAAATTTCAACTTAGTAATAATATTTTGTGACATGCACTCAAACTACATACTCCCTCCATCCCAAAAAAATCCAACCTAGGATAGGACAACAAATCTGGACAAACACTTTGTCCAGATTTGCTGTGACCTATCCTAGGTTGTTCTTTTTTGGGACGGATGGAGTACTTCTGAAGCGTTCGTCCTTATAGTTCTGTTTCATTGTTTCAGGTTGCAAGCCATGAAACTTTTGGTACTTTGGGTGCAATTGTGAAACGGCGCACTGGCAACAAGCAGGTTGGTTTCCTCACTAACCATCATGTCGCGGTTGACTTGGACTACCCTAATCAGAAGATGTTTCATCCATTACCACCCAATCTTGGGCCTGGCGTTTATCTTGGAGCTGTTGAAAGAGCAACTTCTTTCATCACAGATGACGTTTGGTATGGAATCTATGCTGGAACAAACCCAGGTAGAGCAGTTACAAATTAGCTGGTCAGGGCTTTATCTACAATTGTTTGTCTATTTAAAAACAATGTCTTAAGTAACATTAAAAGACACTTCAACTCACTGTATAAATATAAAAAATAAGTTTCCTGCTTCCTAGTTCCCATCATTCATATTAATGCCGGATTGCATTTTTTACTAGTTAGAAACAAATCAACATTTAGTTTTGATTGTAAAAAAAACATACTATGTTTGTGCTTTTCTGGTCATTTAACACATTTACCATTTTATTGATTATTCCAAATGATGTATATACCAGTCTAATTCCCAAACATATATGCCGCCCCATTATGGATTTGCAGAGACATTTGTACGAGCTGACGGTGCATTTATCCCATTTGCTGATGACTTTGACATTTCCACCGTCACGACTGTAGTTAGGGGAGTCGGTGACATTGGGGATGTCAAGGTTATAGATCTGCAGTGTCCGCTCAATAGCCTCATAGGGAGGCAAGTATGCAAAGTTGGCAGAAGCTCTGGTCACACAACTGGGACTGTGATGGCCTATGCCCTTGAGTACAATGACGAGAAAGGAATATGCTTCTTCACAGACATCCTTGTTGTTGGTGAGAACCGCCAAACATTTGATTTGGAAGGTGATAGCGGAAGCCTTATTATCCTGACTAGCCAAGATGGTGAGAAGCCGCGTCCAATTGGAATTATATGGGGTGGCACAGCAAATCGTGGGAGGTTGAAGCTTACAAGTGATCATGGCCCTGAAAACTGGACTAGTGGGGTTGATCTTGGCCGTCTACTCGACCGTCTGGAACTTGATATTATCATTACCAATGAATCACTCCAAGGTTGATTCTTTTCCCTCTATTCATTTGCATTCATCTTCAGATATTCCAGAAATACGTTGGACTATCCAATTTACTTGATGTTTTCATACTACTTTGTATTGAATCTGTACACTTTTGCTCCATTACAAAGCTGACAGAATTTGCCTACTATAAAGATGCCGTGCAGCAGCAAAGATTTGCTTTGGTGGCCGCCGTTACCTCAGCTGTTGGGGAGTCTTCCGGGGTGCCTGTCGCCATCCCGGAAGAGAAGATCGAAGAGATCTTCGAGCCATTGGGGATCCAAATCCAGCAACT-GCCTCGCCATGACGTGGCGGCCTCTGGAACTGAAGGGGAGGAGGCATCCAACACGGTGGTCAATGTGGAAGAGCACCAGTTCATCTCAAACTTCGTCGGTATGTCGCCCGTGCGCGACGACCAAGACGCTCCGAGGAGCATCACCAACCTGAACAACCCCTCCGAGGAAGAACTCGCCATGTCGCTCCATCTGGGTGACCGAGAGCCCAAGCGGCTCCGTTCGGACTCCGGATCAAGCCTTGACCTGGAGAAATGAAGTGCAAAAAGTGCTGGTTCTGAATTTCTGATTCTGGTTCTTCAGAGTTTATTGTCATTGTGGACAGCCAAAAGTAGTAGTAGATCAAAAGACCTCATATGCAGTTCAGAAAAATTGAACCTGCAGTAAGCTTCGGTGAGCTTGAATGGC-TTTGGCAAGCATATCATGTAACATGATGTATTATTATTACTACAATTGATTCAGCCCCTTGTAGGATGTTAGGTGCTAGTCCTGCAGTTTTGCTGTGCTCATGATCGTGAGACCTGATATACACCATTGCCGGATCCCTTCCTCTTTGTAGAAGAAGAAGAACAATGTGCAGGGAATTATGATAATGATGATCTTTGATCTATTTCCCCCTATTATTATTTACCAATTATCAGGT]

[+] EMBL C72366               [TGCAAAAATACCATGTGCATTAAGCACAGCATGCCATCATCTGCACAATAATTGTACAGGACAATACCATGTACTAGCAATTGTACCCTTCATGTTGTAAGGGGACCGTTCAAATTTGTCAAGATTCATCGCAAGATTTGCTAGTACAAAGTGGATAAATTTTCATGGCACTCTGAAGATTATGGCAAAAACTGACCGTTGGTTTGTTGGTTAGTCCTAACATCTAAGTTTGACCAGTTGAGCGGTGGCCACAGCTAGTTTGAATGCTACCAATGTTCATTACATC AAGCAGATGATCTGATCGGAGATTGGAGGGAG TTCTCCNTCTTAATCATATCATATCANTTGAGAT CTNGCATACTATATGTTGGTTCTTGTGCAGANT AAGC TCTGGGTTTT CACAATCCTCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK064014             [                                                                                                                                TCGCAAGATTTGCTAGTACAAAGTGGATAAATTTTCATGGCACTCTGAAGATTATGCCAAAAACTGACCGTTGGTTTGTTGGTTAGTCCTAACATCTAAGTTTGACCAGTTGAGCGGTGGCCACAGCTAGTTTGAATGCTACCAATGTTCATTACATCAAAGCAGATGATCTGATCGGAGATTGGAAGGAGTTTCTCCTTCTAAATCATATCATATCATTTGAGATACT GCATACTATATGTTGGTTCTTGTGCAGATTAAAGCTTCTGGATTTTACACAATCCTCCTACCGTTTACCAGTCAAACCTTTAACATGTTGCTGTGCTCTTTTTGTGAAATTTCAACTTAGTAATAATATTTTGTGACATGCACTCAAACTACATACTCCCTCCATCCCAAAAAAATCCAACCTAGGATAGGACAACAAATCTGGACAAACACTTTGTCCAGATTTGCTGTGACCTATCCTAGGTTGTTCTTTTTTGGGACGGATGGAGTACTTCTGAAGCGTTCGTCCTTATAGTTCTGTTTCATTGTTTCAGGTTGCAAGCCATGAAACTTTTGGTACTTTGGGTGCAATTGTGAAACGGCGCACTGGCAACAAGCAGGTTGGTTTCCTCACTAACCATCATGTCGCGGTTGACTTGGACTACCCTAATCAGAAGATGTTTCATCCATTACCACCCAATCTTGGGCCTGGCGTTTATCTTGGAGCTGTTGAAAGAGCAACTTCTTTCATCACAGATGACGTTTGGTATGGAATCTATGCTGGAACAAACCCAGGTAGAGCAGTTACAAATTAGCTGGTCAGGGCTTTATCTACAATTGTTTGTCTATTTAAAAACAATGTCTTAAGTAACATTAAAAGACACTTCAACTCACTGTATAAATATAAAAAATAAGTTTCCTGCTTCCTAGTTCCCATCATTCATATTAATGCCGGATTGCATTTTTTACTAGTTAGAAACAAATCAACATTTAGTTTTGATTGTAAAAAAAACATACTATGTTTGTGCTTTTCTGGTCATTTAACACATTTACCATTTTATTGATTATTCCAAATGATGTATATACCAGTCTAATTCCCAAACATATATGCCGCCCCATTATGGATTTGCAGAGACATTTGTACGAGCTGACGGTGCATTTATCCCATTTGCTGATGACTTTGACATTTCCACCGTCACGACTGTAGTTAGGGGAGTCGGTGACATTGGGGATGTCAAGGTTATAGATCTGCAGTGTCCGCTCAATAGCCTCATAGGGAGGCAAGTATGCAAAGTTGGCAGAAGCTCTGGTCACACAACTGGGACTGTGATGGCCTATGCCCTTGAGTACAATGACGAGAAAGGAATATGCTTCTTCACAGACATCCTTGTTGTTGGTGAGAACCGCCAAACATTTGATTTGGAAGGTGATAGCGGAAGCCTTATTATCCTGACTAGCCAAGATGGTGAGAAGCCGCGTCCAATTGGAATTATATGGGGTGGCACAGCAAATCGTGGGAGGTTGAAGCTTACAAGTGATCATGGCCCTGAAAACTGGACTAGTGGGGTTGATCTTGGCCGTCTACTCGACCGTCTGGAACTTGATATTATCATTACCAATGAATCACTCCAAGGTTGATTCTTTTCCCTCTATTCATTTGCATTCATCTTCAGATATTCCAGAAATACGTTGGACTATCCAATTTACTTGATGTTTTCATACTACTTTGTATTGAATCTGTACACTTTTGCTCCATTACAAAGCTGACAGAATTTGCCTACTATAAAGATGCCGTGCAGCAGCAAAGATTTGCTTTGGTGGCCGCCGTTACCTCAGCTGTTGGGGAGTCTTCCGGGGTGCCTGTCGCCATCCCGGAAGAGAAGATCGAAGAGATCTTCGAGCCATTGGGGATCCAAATCCAGCAACT GCCTCGCCATGACGTGGCGGCCTCTGGAACTGAAGGGGAGGAGGCATCCAACACGGTGGTCAATGTGGAAGAGCACCAGTTCATCTCAAACTTCGTCGGTATGTCGCCCGTGCGCGACGACCAAGACGCTCCGAGGAGCATCACCAACCTGAACAACCCCTCCGAGGAAGAACTCGCCATGTCGCTCCATCTGGGTGACCGAGAGCCCAAGCGGCTCCGTTCGGACTCCGGATCAAGCCTTGACCTGGAGAAATGAAGTGCAAAAAGTGCTGGTTCTGAATTTCTGATTCTGGTTCTTCAGAGTTTATTGTCATTGTGGACAGCCAAAAGTAGTAGTAGATCAAAAGACCTCATATGCAGTTCAGAAAAATTGAACCTGCAGTAAGCTTCGGTGAGCTTGAATGGC TTTGGCAAGCATATCATGTAACATGATGTATTATTATTACTACAATTGATTCAGCCCCTTGTAGGATGTTAGGTGCTAGTCCTGCAGTTTTGCTGTGCTCATGATCGTGAGACCTGATATACACCATTGCCGGATCCCTTCCTCTTTGTAGAAGAAGAAGAACAATGTGCAGGGAATTATGATAATGATGATCTTTGATCTATTTCCCCCTATTATTATTTACCAATTATCAGGT]
[+] EMBL CB000047             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CAGCAGCAAAGATTTGCTTTGGTGGCCGCCGTCCCTTCAGCTGTTGGGGAGTCTTCCGGGGTGCCTGTCGCCATCCCGGAAGAGAAGATCGAAGAGATCTTCGAGCCCTTGGGGATCCAAATCCAGCAACT GCCTCGCCATGACGTGGCGGCCTCTGGAACTGAAGGGGAGGAGGCATCCAACACGGTGGTCAATGTGGAAGAGCACCAGTTCATCTCAAACTTCGTCGGTATGTCGCCCGTGCGCGACGACCAAGACGCTCCGAGGAGCATCACCAACCTGAGCAACCCCGCCGAGGAAGAACTCGCCATGTCGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA999399             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGCAGCAAAGATTTGCTTTGGTGGCCGCCGTTACCTCAGCTGTTGGGGAGTCTTCCGGGGTGCCTGTCGCCATCCCGGAAGAGAAGATCGAAGAGATCTTCGAGCCATTGGGGATCCAAATCCAGCAACTGGCCTCGCCATGACGTGGCGGCCTCTGGAACTGAAGGGGAGGAGGCATCCAACACGGTGGTCAATGTGGAAGAGCACCAGTTCATCTCAAACTTCGTCGGTATGTCGCCCGTGCGCGACGACCAAGACGCTCCGAGGAGCATCACCAACCTGAACAACCCCTCCGAGGAAGAACTCGCCATGTCGCTCCATCTGGGTGACCGAGAGCCCAAGCGGCTCCGTTCGGACTCCGGATCAAGCCTTGACCTGGAGAAATGAAGTGCAAAAAGTGCTGGTTCTGAATTTCTGATTCTGGTTCTTCAGAGTTTATTGTCATTGTGGACAGCCAAAAGTAGTAGTAGATCAAAAGACCTCATATGCAGTTCAGAAAAATTGAACCTGCAGTAAGCTTCGGTGAGCTTGAATGGCTTTTGGC AGCATATCATGTAACATGATGTATTATTATT                                                                                                                                                                                                     ]
[+] EMBL CA998742             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAGATTTGCTTTGGTGGCCGCCGTTACCTCATCTCTTGGGGAGTCTTCCGGGGTGCCTGTCGCCATCCCGGAAGAGAAGATCGAAGAGATCTTCGAGCCATTGGGGATCCAAATCCAGCAACTGGCCTCGCCATGACGTGGCGGCCTCTGGAACTGAAGGGGAGGAGGCATCCAACACGGTGGTCAATGTGGAAGAGCACCAGTTCATCTCAAACTTCGTCGGTATGTCGCCCGTGCGCGACGACCAAGACGCTCCGAGGAGCATCACCAACCTGAACAACCCCTCCGAGGAAGAACTCGCCATGTCGCTCCATCTGGGTGACCGAGAGCCCAAGCGGCTCCGTTCGGACTCCGGATCAAGCCTTGACCTGGAGAAATGAAGTGCAAAAAGTGCTGGTTCTGAATTTCTGATTCTGGTTCTTCAGAGTTTATTGTCATTGTGG                                                                                                                                                                                                                                                                                                                                   ]


>consensus_8813#0 TGCAAAAATACCATGTGCATTAAGCACAGCATGCCATCATCTGCACAATAATTGTACAGG ACAATACCATGTACTAGCAATTGTACCCTTCATGTTGTAAGGGGACCGTTCAAATTTGTC AAGATTCATCGCAAGATTTGCTAGTACAAAGTGGATAAATTTTCATGGCACTCTGAAGAT TATGGCAAAAACTGACCGTTGGTTTGTTGGTTAGTCCTAACATCTAAGTTTGACCAGTTG AGCGGTGGCCACAGCTAGTTTGAATGCTACCAATGTTCATTACATCAAGCAGATGATCTG ATCGGAGATTGGAGGGAGTTCTCCNTCTTAATCATATCATATCANTTGAGATCTGCATAC TATATGTTGGTTCTTGTGCAGANTAAGCTCTGGGTTTTCACAATCCTCCTACCGTTTACC AGTCAAACCTTTAACATGTTGCTGTGCTCTTTTTGTGAAATTTCAACTTAGTAATAATAT TTTGTGACATGCACTCAAACTACATACTCCCTCCATCCCAAAAAAATCCAACCTAGGATA GGACAACAAATCTGGACAAACACTTTGTCCAGATTTGCTGTGACCTATCCTAGGTTGTTC TTTTTTGGGACGGATGGAGTACTTCTGAAGCGTTCGTCCTTATAGTTCTGTTTCATTGTT TCAGGTTGCAAGCCATGAAACTTTTGGTACTTTGGGTGCAATTGTGAAACGGCGCACTGG CAACAAGCAGGTTGGTTTCCTCACTAACCATCATGTCGCGGTTGACTTGGACTACCCTAA TCAGAAGATGTTTCATCCATTACCACCCAATCTTGGGCCTGGCGTTTATCTTGGAGCTGT TGAAAGAGCAACTTCTTTCATCACAGATGACGTTTGGTATGGAATCTATGCTGGAACAAA CCCAGGTAGAGCAGTTACAAATTAGCTGGTCAGGGCTTTATCTACAATTGTTTGTCTATT TAAAAACAATGTCTTAAGTAACATTAAAAGACACTTCAACTCACTGTATAAATATAAAAA ATAAGTTTCCTGCTTCCTAGTTCCCATCATTCATATTAATGCCGGATTGCATTTTTTACT AGTTAGAAACAAATCAACATTTAGTTTTGATTGTAAAAAAAACATACTATGTTTGTGCTT TTCTGGTCATTTAACACATTTACCATTTTATTGATTATTCCAAATGATGTATATACCAGT CTAATTCCCAAACATATATGCCGCCCCATTATGGATTTGCAGAGACATTTGTACGAGCTG ACGGTGCATTTATCCCATTTGCTGATGACTTTGACATTTCCACCGTCACGACTGTAGTTA GGGGAGTCGGTGACATTGGGGATGTCAAGGTTATAGATCTGCAGTGTCCGCTCAATAGCC TCATAGGGAGGCAAGTATGCAAAGTTGGCAGAAGCTCTGGTCACACAACTGGGACTGTGA TGGCCTATGCCCTTGAGTACAATGACGAGAAAGGAATATGCTTCTTCACAGACATCCTTG TTGTTGGTGAGAACCGCCAAACATTTGATTTGGAAGGTGATAGCGGAAGCCTTATTATCC TGACTAGCCAAGATGGTGAGAAGCCGCGTCCAATTGGAATTATATGGGGTGGCACAGCAA ATCGTGGGAGGTTGAAGCTTACAAGTGATCATGGCCCTGAAAACTGGACTAGTGGGGTTG ATCTTGGCCGTCTACTCGACCGTCTGGAACTTGATATTATCATTACCAATGAATCACTCC AAGGTTGATTCTTTTCCCTCTATTCATTTGCATTCATCTTCAGATATTCCAGAAATACGT TGGACTATCCAATTTACTTGATGTTTTCATACTACTTTGTATTGAATCTGTACACTTTTG CTCCATTACAAAGCTGACAGAATTTGCCTACTATAAAGATGCCGTGCAGCAGCAAAGATT TGCTTTGGTGGCCGCCGTTACCTCAGCTGTTGGGGAGTCTTCCGGGGTGCCTGTCGCCAT CCCGGAAGAGAAGATCGAAGAGATCTTCGAGCCATTGGGGATCCAAATCCAGCAACTGCC TCGCCATGACGTGGCGGCCTCTGGAACTGAAGGGGAGGAGGCATCCAACACGGTGGTCAA TGTGGAAGAGCACCAGTTCATCTCAAACTTCGTCGGTATGTCGCCCGTGCGCGACGACCA AGACGCTCCGAGGAGCATCACCAACCTGAACAACCCCTCCGAGGAAGAACTCGCCATGTC GCTCCATCTGGGTGACCGAGAGCCCAAGCGGCTCCGTTCGGACTCCGGATCAAGCCTTGA CCTGGAGAAATGAAGTGCAAAAAGTGCTGGTTCTGAATTTCTGATTCTGGTTCTTCAGAG TTTATTGTCATTGTGGACAGCCAAAAGTAGTAGTAGATCAAAAGACCTCATATGCAGTTC AGAAAAATTGAACCTGCAGTAAGCTTCGGTGAGCTTGAATGGCTTTGGCAAGCATATCAT GTAACATGATGTATTATTATTACTACAATTGATTCAGCCCCTTGTAGGATGTTAGGTGCT AGTCCTGCAGTTTTGCTGTGCTCATGATCGTGAGACCTGATATACACCATTGCCGGATCC CTTCCTCTTTGTAGAAGAAGAAGAACAATGTGCAGGGAATTATGATAATGATGATCTTTG ATCTATTTCCCCCTATTATTATTTACCAATTATCAGGT



consensusID : consensus_8813#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence
                              [AGGTTGGTTTCCTCACTAACCATCATGTCGCGGTTGACTTGGACTACCCTAATCAGAAGATGTTTCATCCATTACCACCCAATCTTGGGCCTGGCGTTTATCTTGGAGCTGTTGAAAGAGCAACTTCTTTCATCACAGATGACGTTTGGTATGGAATCTATGCTGGAACAAACCCAGAGACATTTGTACGAGCTGACGGTGCATTTATCCCATTTGCTGATGACTTTGACATTTCCACCGTCACGACTGTAGTTAGGGGAGTCGGTGACATTGGGGATGTCAAGGTTATAGATCTGCAGTGTCCGCTCAATAGCCTCATAGGGAGGCAAGTATGCAAAGTTGGCAGAAGCTCTGGGTCACACAACTGGGGACTGTGATGGCCTATGCCCTTGAGTACAATGACGAGAAAGGAATATGCTTCTTCACAGACATCCTTGTTG]

[+] EMBL C72733               [AGGTTGGTTTCCTCACTAACCATCATGTCGCGGTTGACTTGGACTACCCTAATCAGAAGATGTTTCATCCATTACCACCCAATCTTGGGCCTGGCGTTTATCTTGGAGCTGTTGAAAGAGCAACTTCTTTCATCACAGATGACGTTTGGTATGGAATCTATGCTGGAACAAACCCAGAGACATTTGTACGAGCTGACGGTGCATTTATCCCATTTGCTGATGACTTTGACATTTCCACCGTCACGACTGTAGTTAGGGGAGTCGGTGACATTGGGGATGTCAAGGTTATAGATCTGCAGTGTCCGCTCAATAGCCTCATAGGGAGGCAAGTATGCAAAGTTGGCAGAAGCTCTGGGTCACACAACTGGGGACTGTGATGGCCTATGCCCTTGAGTACAATGACGAGAAAGGAATATGCTTCTTCACAGACATCCTTGTTG]


>consensus_8813#1 AGGTTGGTTTCCTCACTAACCATCATGTCGCGGTTGACTTGGACTACCCTAATCAGAAGA TGTTTCATCCATTACCACCCAATCTTGGGCCTGGCGTTTATCTTGGAGCTGTTGAAAGAG CAACTTCTTTCATCACAGATGACGTTTGGTATGGAATCTATGCTGGAACAAACCCAGAGA CATTTGTACGAGCTGACGGTGCATTTATCCCATTTGCTGATGACTTTGACATTTCCACCG TCACGACTGTAGTTAGGGGAGTCGGTGACATTGGGGATGTCAAGGTTATAGATCTGCAGT GTCCGCTCAATAGCCTCATAGGGAGGCAAGTATGCAAAGTTGGCAGAAGCTCTGGGTCAC ACAACTGGGGACTGTGATGGCCTATGCCCTTGAGTACAATGACGAGAAAGGAATATGCTT CTTCACAGACATCCTTGTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8813#0      TGCAAAAATACCATGTGCATTAAGCACAGCATGCCATCATCTGCACAATAATTGTACAGG 60
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      ACAATACCATGTACTAGCAATTGTACCCTTCATGTTGTAAGGGGACCGTTCAAATTTGTC 120
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      AAGATTCATCGCAAGATTTGCTAGTACAAAGTGGATAAATTTTCATGGCACTCTGAAGAT 180
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      TATGGCAAAAACTGACCGTTGGTTTGTTGGTTAGTCCTAACATCTAAGTTTGACCAGTTG 240
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      AGCGGTGGCCACAGCTAGTTTGAATGCTACCAATGTTCATTACATCAAGCAGATGATCTG 300
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      ATCGGAGATTGGAGGGAGTTCTCCNTCTTAATCATATCATATCANTTGAGATCTGCATAC 360
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      TATATGTTGGTTCTTGTGCAGANTAAGCTCTGGGTTTTCACAATCCTCCTACCGTTTACC 420
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      AGTCAAACCTTTAACATGTTGCTGTGCTCTTTTTGTGAAATTTCAACTTAGTAATAATAT 480
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      TTTGTGACATGCACTCAAACTACATACTCCCTCCATCCCAAAAAAATCCAACCTAGGATA 540
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      GGACAACAAATCTGGACAAACACTTTGTCCAGATTTGCTGTGACCTATCCTAGGTTGTTC 600
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      TTTTTTGGGACGGATGGAGTACTTCTGAAGCGTTCGTCCTTATAGTTCTGTTTCATTGTT 660
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      TCAGGTTGCAAGCCATGAAACTTTTGGTACTTTGGGTGCAATTGTGAAACGGCGCACTGG 720
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      CAACAAGCAGGTTGGTTTCCTCACTAACCATCATGTCGCGGTTGACTTGGACTACCCTAA 780
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      TCAGAAGATGTTTCATCCATTACCACCCAATCTTGGGCCTGGCGTTTATCTTGGAGCTGT 840
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      TGAAAGAGCAACTTCTTTCATCACAGATGACGTTTGGTATGGAATCTATGCTGGAACAAA 900
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      CCCAGGTAGAGCAGTTACAAATTAGCTGGTCAGGGCTTTATCTACAATTGTTTGTCTATT 960
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      TAAAAACAATGTCTTAAGTAACATTAAAAGACACTTCAACTCACTGTATAAATATAAAAA 1020
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      ATAAGTTTCCTGCTTCCTAGTTCCCATCATTCATATTAATGCCGGATTGCATTTTTTACT 1080
consensus_8813#1      -------------------------------------------AGGTTGGTTTCCTCACT 17
                                                                  * ***  **  * ***

consensus_8813#0      AGTTAGAAACAAATCAACATTTAGTTTTGATTG---TAAAAAAAACATACTATGTTTGTG 1137
consensus_8813#1      AACC---ATCATGTCG-CGGTTGACTTGGACTACCCTAATCAGAAGATGTTTCATCCATT 73
                      *      * **  **  *  **   ** ** *    ***  * ** **  *   *   * 

consensus_8813#0      CTTTTCTGGTCATTTAACACATTTACCATTTTATTGATTATTCCAAATGATGTATATACC 1197
consensus_8813#1      ACCACCCAATC-TTGGGCCTGGCGTTTATCTTGGAG-CTGTTGAAAGAGCAACTTCTTTC 131
                           *   ** **   *         ** **   *  * **  **  *     * *  *

consensus_8813#0      AGTCTAATTCCCA---AACATATATGCCGCCCCATTATGGATTTGCAGAGACATTTGTAC 1254
consensus_8813#1      ATCACAGATGACGTTTGGTATGGAATCTATGCTGGAACAAACC--CAGAGACATTTGTAC 189
                      *    *  *  *       **  *  *    *    *   *    ***************

consensus_8813#0      GAGCTGACGGTGCATTTATCCCATTTGCTGATGACTTTGACATTTCCACCGTCACGACTG 1314
consensus_8813#1      GAGCTGACGGTGCATTTATCCCATTTGCTGATGACTTTGACATTTCCACCGTCACGACTG 249
                      ************************************************************

consensus_8813#0      TAGTTAGGGGAGTCGGTGACATTGGGGATGTCAAGGTTATAGATCTGCAGTGTCCGCTCA 1374
consensus_8813#1      TAGTTAGGGGAGTCGGTGACATTGGGGATGTCAAGGTTATAGATCTGCAGTGTCCGCTCA 309
                      ************************************************************

consensus_8813#0      ATAGCCTCATAGGGAGGCAAGTATGCAAAGTTGGCAGAAGCTCTGG-TCACACAACTGGG 1433
consensus_8813#1      ATAGCCTCATAGGGAGGCAAGTATGCAAAGTTGGCAGAAGCTCTGGGTCACACAACTGGG 369
                      ********************************************** *************

consensus_8813#0      -ACTGTGATGGCCTATGCCCTTGAGTACAATGACGAGAAAGGAATATGCTTCTTCACAGA 1492
consensus_8813#1      GACTGTGATGGCCTATGCCCTTGAGTACAATGACGAGAAAGGAATATGCTTCTTCACAGA 429
                       ***********************************************************

consensus_8813#0      CATCCTTGTTGTTGGTGAGAACCGCCAAACATTTGATTTGGAAGGTGATAGCGGAAGCCT 1552
consensus_8813#1      CATCCTTGTTG------------------------------------------------- 440
                      ***********                                                 

consensus_8813#0      TATTATCCTGACTAGCCAAGATGGTGAGAAGCCGCGTCCAATTGGAATTATATGGGGTGG 1612
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      CACAGCAAATCGTGGGAGGTTGAAGCTTACAAGTGATCATGGCCCTGAAAACTGGACTAG 1672
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      TGGGGTTGATCTTGGCCGTCTACTCGACCGTCTGGAACTTGATATTATCATTACCAATGA 1732
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      ATCACTCCAAGGTTGATTCTTTTCCCTCTATTCATTTGCATTCATCTTCAGATATTCCAG 1792
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      AAATACGTTGGACTATCCAATTTACTTGATGTTTTCATACTACTTTGTATTGAATCTGTA 1852
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      CACTTTTGCTCCATTACAAAGCTGACAGAATTTGCCTACTATAAAGATGCCGTGCAGCAG 1912
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      CAAAGATTTGCTTTGGTGGCCGCCGTTACCTCAGCTGTTGGGGAGTCTTCCGGGGTGCCT 1972
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      GTCGCCATCCCGGAAGAGAAGATCGAAGAGATCTTCGAGCCATTGGGGATCCAAATCCAG 2032
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      CAACTGCCTCGCCATGACGTGGCGGCCTCTGGAACTGAAGGGGAGGAGGCATCCAACACG 2092
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      GTGGTCAATGTGGAAGAGCACCAGTTCATCTCAAACTTCGTCGGTATGTCGCCCGTGCGC 2152
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      GACGACCAAGACGCTCCGAGGAGCATCACCAACCTGAACAACCCCTCCGAGGAAGAACTC 2212
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      GCCATGTCGCTCCATCTGGGTGACCGAGAGCCCAAGCGGCTCCGTTCGGACTCCGGATCA 2272
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      AGCCTTGACCTGGAGAAATGAAGTGCAAAAAGTGCTGGTTCTGAATTTCTGATTCTGGTT 2332
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      CTTCAGAGTTTATTGTCATTGTGGACAGCCAAAAGTAGTAGTAGATCAAAAGACCTCATA 2392
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      TGCAGTTCAGAAAAATTGAACCTGCAGTAAGCTTCGGTGAGCTTGAATGGCTTTGGCAAG 2452
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      CATATCATGTAACATGATGTATTATTATTACTACAATTGATTCAGCCCCTTGTAGGATGT 2512
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      TAGGTGCTAGTCCTGCAGTTTTGCTGTGCTCATGATCGTGAGACCTGATATACACCATTG 2572
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      CCGGATCCCTTCCTCTTTGTAGAAGAAGAAGAACAATGTGCAGGGAATTATGATAATGAT 2632
consensus_8813#1      ------------------------------------------------------------
                                                                                  

consensus_8813#0      GATCTTTGATCTATTTCCCCCTATTATTATTTACCAATTATCAGGT 2678
consensus_8813#1      ----------------------------------------------
                                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)