cluster # 8820

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Oryza sativa
cluster # 8820 cluster # 8820 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8820#0 length = 801 sequences # 3

consensus_8820#1 length = 619 sequences # 3

consensusID : consensus_8820#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 801
fasta sequence

                              [CAAAGGCCAAGAAGCCCTAGCCTAGCCATGGTCGGTGGAGGCCGCCGGCGACAGTGACCGGCGAGGGCGAGGCGGTGCCGGC-GGTGGTGGGGAGAGAGATGTCGGTGAGGATAAAGGCGGTGGTGGACAGGTTCGTGAAGGAGCTGAAGGAGGCGCTGGACGCGGACATCCAGGACCGCATCATGAAGGAGCGGGAGATGCAGAGCTACATCGAGGAGCGCGAGCGCGAGGTCGCCGAGCGGGAGGCCGCGTGGAAGGCCGAGCTATCCCGCCGCGAGGCAGA-AATTGCGCGACAAGAAGCAAGGCTGAAAATTGAAAGGGAGAACTTGGAGAAAGAAAAGAGTGTCCTCATGGGAACTGCTTCAAGCCAGGATAACCAAGACGGGGCCCTGGAAAT-CACAGTCAGTGGTGAGAAATACAGGTGCCTTCGCTTCTCCAAGGCAAAGAAGTGAGATATGGGCTACAGAAGTTGACAAGAATAATCGTGGATGGTACACCAATAGTAGCATTTTTTAGCCTTAGATGTGATTCAAGCTTGGGTGCTTCATGAAATCCTGCAGTGTCCAAAAATGAGGAAAGATACTCCTCTCTTTTTATGGTGTAAGGTAGCTACCAGGCAGTGTAGTCTCTGCAGCCATCTGATTCCTCTTAATCGAATCATTGAGCATCAAAGGTGATCTGAGCCTGCCATTTGCGTGTCTTGGCATGTAGTAACATGGACTTATATTAGATCTAGCTTATGCCACAAATGGCTTCATGGCAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK063264             [CAAAGGCCAAGAAGCCCTAGCCTAGCCATGGTCGGTGGAGGCCGCCGGCGACAGTGACCGGCGAGGGCGAGGCGGTGCCGGC GGTGGTGGGGAGAGAGATGTCGGTGAGGATAAAGGCGGTGGTGGACAGGTTCGTGAAGGAGCTGAAGGAGGCGCTGGACGCGGACATCCAGGACCGCATCATGAAGGAGCGGGAGATGCAGAGCTACATCGAGGAGCGCGAGCGCGAGGTCGCCGAGCGGGAGGCCGCGTGGAAGGCCGAGCTATCCCGCCGCGAGGCAGA AATTGCGCGACAAGAAGCAAGGCTGAAAATTGAAAGGGAGAACTTGGAGAAAGAAAAGAGTGTCCTCATGGGAACTGCTTCAAGCCAGGATAACCAAGACGGGGCCCTGGAAAT CACAGTCAGTGGTGAGAAATACAGGTGCCTTCGCTTCTCCAAGGCAAAGAAGTGAGATATGGGCTACAGAAGTTGACAAGAATAATCGTGGATGGTACACCAATAGTAGCATTTTTTAGCCTTAGATGTGATTCAAGCTTGGGTGCTTCATGAAATCCTGCAGTGTCCAAAAATGAGGAAAGATACTCCTCTCTTTTTATGGTGTAAGGTAGCTACCAGGCAGTGTAGTCTCTGCAGCCATCTGATTCCTCTTAATCGAATCATTGAGCATCAAAGGTGATCTGAGCCTGCCATTTGCGTGTCTTGGCATGTAGTAACATGGACTTATATTAGATCTAGCTTATGCCACAAATGGCTTCATGGCAACTT                                   ]
[+] EMBL C97248               [             GCCCTAGCCTAGCCATNGTCGGTGGAGGCCGCC GCGACAGTNACCGGCGAGGGCGAGGCGGTG CGNCNGGTGGTGGGGAGAGAGATGTCGGTGAGGATAAAGGCGGTGGTGGACAGGTTCGTGAAGGAGCTGAAGGAGGCGCTGGACG GGACATCCAGGACCGCATCATGAAGGAGCGGGAGATNCAGAGCTACATCGAGGAGCGCGNNCANG NGTCNCCGAGCNGGAGGCCCCGTGGAAGGCCGAGCTATCCCNCCGCGA  CAGAGAATTGCGCGACAAGAAGCAAGGCTGAAAATTNAAAGGGAGAACTTTGAGAAAGAAAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL C97249               [                                                                                                                                                                                                                                                                                                                                                                           TTC AGCCCGGNTACCCAAGAC GGGCCCTGGAAATCCCCAGTCAGTGGTGAGAAATACAGGTGCCTTCGCTTCTCCAAGGCAAAGAAGTGAGATATGGGCTACAGAAGTTGACAAGAATAATCGTGGATGGTACACCAATAGTAGCATTTTTTAGCCTTAGATGTGATTCAAGCTTGGGTGCTTCATGAAATCCTGCAGTGTCCAAAAATGAGGAAAGATACTCCTCTCTTTTTATGGTGTAAGGTAGCTACCAGGCAGTGTAGTCTCTGCAGCCATCTGATTCCTCTTAATCGAATCATTGAGCATCAAAGGTGATCTGAGCCTGCCATTTGCGTGTCTTGGCATGTAGTAACATGGACTTATATTAGATCTAGCTTATGCCACAAATGGCTTCATGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8820#0
CAAAGGCCAAGAAGCCCTAGCCTAGCCATGGTCGGTGGAGGCCGCCGGCGACAGTGACCG
GCGAGGGCGAGGCGGTGCCGGCGGTGGTGGGGAGAGAGATGTCGGTGAGGATAAAGGCGG
TGGTGGACAGGTTCGTGAAGGAGCTGAAGGAGGCGCTGGACGCGGACATCCAGGACCGCA
TCATGAAGGAGCGGGAGATGCAGAGCTACATCGAGGAGCGCGAGCGCGAGGTCGCCGAGC
GGGAGGCCGCGTGGAAGGCCGAGCTATCCCGCCGCGAGGCAGAAATTGCGCGACAAGAAG
CAAGGCTGAAAATTGAAAGGGAGAACTTGGAGAAAGAAAAGAGTGTCCTCATGGGAACTG
CTTCAAGCCAGGATAACCAAGACGGGGCCCTGGAAATCACAGTCAGTGGTGAGAAATACA
GGTGCCTTCGCTTCTCCAAGGCAAAGAAGTGAGATATGGGCTACAGAAGTTGACAAGAAT
AATCGTGGATGGTACACCAATAGTAGCATTTTTTAGCCTTAGATGTGATTCAAGCTTGGG
TGCTTCATGAAATCCTGCAGTGTCCAAAAATGAGGAAAGATACTCCTCTCTTTTTATGGT
GTAAGGTAGCTACCAGGCAGTGTAGTCTCTGCAGCCATCTGATTCCTCTTAATCGAATCA
TTGAGCATCAAAGGTGATCTGAGCCTGCCATTTGCGTGTCTTGGCATGTAGTAACATGGA
CTTATATTAGATCTAGCTTATGCCACAAATGGCTTCATGGCAACTTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_8820#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 619
fasta sequence

                              [TGGGCTCTCTCCCACGACGAAACGAGCGGCCCACGAAAATTTCGCCGCGCCGCGGCCGCATCGGAGCCCTAGCCCAGCCGCCGGAGTCCGGCGCCAGCGGCGGCGAGGCGGCGAAGTGCGGGGGAGGGAGATGTCGGTGCGGATCAAGGCGGTGGTGGACAGGTTCGTGAAGGAGCTGCAGGAGGCGCTGGACGCGGACATCCAGGATCGCGTCATGAAGGAGCGGGAGATGCAGAGCTACATCCAGGAGCGGGAGCGCGAGGTCGCCGAGCGGGAGGCCGCCTGGAAGGCCGAGCTCTCCCGCCGCGAGGCTGAGATTGCGCGGCAAGAGGCAAGGCTGAAGATGGAAAAGGAGAACTTAGAGAAGGAAAAGAGCGTGCTCATGGGCACTGCTTCGAATCA-GGACAACCAAGACGGTGCCCTCGAGATCACTGTTAGCGGTGAAAAGTACAGGTGCCTTCGTTTCTCTAAGGCAAAGAAATGAGATATGAACTTAGGCATCGAGAAGTAGTTGTGTAAGACAGATTCATGGTAATGGTAAAACCTTATTTTGTTTCAAATTGGATTCTTTTGTACAGGGAATTCTGAAACGTGCGTAAACTCAGTAAAATATCCATAG]

[+] EMBL AK111478             [TGGGCTCTCTCCCACGACGAAACGAGCGGCCCACGAAAATTTCGCCGCGCCGCGGCCGCATCGGAGCCCTAGCCCAGCCGCCGGAGTCCGGCGCCAGCGGCGGCGAGGCGGCGAAGTGCGGGGGAGGGAGATGTCGGTGCGGATCAAGGCGGTGGTGGACAGGTTCGTGAAGGAGCTGCAGGAGGCGCTGGACGCGGACATCCAGGATCGCGTCATGAAGGAGCGGGAGATGCAGAGCTACATCCAGGAGCGGGAGCGCGAGGTCGCCGAGCGGGAGGCCGCCTGGAAGGCCGAGCTCTCCCGCCGCGAGGCTGAGATTGCGCGGCAAGAGGCAAGGCTGAAGATGGAAAAGGAGAACTTAGAGAAGGAAAAGAGCGTGCTCATGGGCACTGCTTCGAATCA GGACAACCAAGACGGTGCCCTCGAGATCACTGTTAGCGGTGAAAAGTACAGGTGCCTTCGTTTCTCTAAGGCAAAGAAATGAGATATGAACTTAGGCATCGAGAAGTAGTTGTGTAAGACAGATTCATGGTAATGGTAAAACCTTATTTTGTTTCAAATTGGATTCTTTTGTACAGGGAATTCTGAAACGTGCGTAAACTCAGTAAAATATCCATAG]
[+] EMBL C91891               [                                                                      AGCCCAGCCGCCGGAGTCCGGCGCCA CGGCGGCGAGGCGGCGAAGTGCGGGGGAGGGAGATGTCGGTGCGGATCAAGGCGGTGGTGGACAGGTTCGTGAAGGAGCTGCAGGAGGCGCTGGACGCGGACATCCAGGATCGCGTCATGAAGGAGCGGGAGATGCAGAGCTACATCCAGGAGCGGGAGCGCGAGGTCGCCGAGCGGGAGGCCGCCTGGAAGGCCGAGCTCTCCCGCCGCGAGGTTGAGATTGCGCGGCAAGAGGCAAGGCTGAAGATGGAAAAGGAGAACTTAGAGAAGGAAAAGAGCGTGCTCATGGGCACTGCTTCGAATCAGGGACAACCAAGACGGTGCCCTCGAGATCACTGTTAGCGGTGAAAAGTACAGGTGCCTTCGTTTCTCTAAGGCAAAGAAATGAGATATGAACTTAGGCATCGAGAAGTAG                                                                                                            ]
[+] EMBL CA763834             [                                                                                                                                                                                                                                                                                                                                                                                                                     ACAACCAAGACGGTGCCCTCGAGATCACTGTTAGCGGTGAAAAGTACAGGTGCCTTCGTTTCTCTAAGGCAAAGAAATGAGATATGAACTTAGGCATCGAGAAGTAGTTGTGTAAGACAGATTCATGGTAATGGTAAAACCTTATTTTGTTTCAAATTGGATTCTTTTGTACAGGGAATTCTGAAACGTGCGTAAAC                  ]




>consensus_8820#1
TGGGCTCTCTCCCACGACGAAACGAGCGGCCCACGAAAATTTCGCCGCGCCGCGGCCGCA
TCGGAGCCCTAGCCCAGCCGCCGGAGTCCGGCGCCAGCGGCGGCGAGGCGGCGAAGTGCG
GGGGAGGGAGATGTCGGTGCGGATCAAGGCGGTGGTGGACAGGTTCGTGAAGGAGCTGCA
GGAGGCGCTGGACGCGGACATCCAGGATCGCGTCATGAAGGAGCGGGAGATGCAGAGCTA
CATCCAGGAGCGGGAGCGCGAGGTCGCCGAGCGGGAGGCCGCCTGGAAGGCCGAGCTCTC
CCGCCGCGAGGCTGAGATTGCGCGGCAAGAGGCAAGGCTGAAGATGGAAAAGGAGAACTT
AGAGAAGGAAAAGAGCGTGCTCATGGGCACTGCTTCGAATCAGGACAACCAAGACGGTGC
CCTCGAGATCACTGTTAGCGGTGAAAAGTACAGGTGCCTTCGTTTCTCTAAGGCAAAGAA
ATGAGATATGAACTTAGGCATCGAGAAGTAGTTGTGTAAGACAGATTCATGGTAATGGTA
AAACCTTATTTTGTTTCAAATTGGATTCTTTTGTACAGGGAATTCTGAAACGTGCGTAAA
CTCAGTAAAATATCCATAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8820#0      ------------------------CAAAGGCCAAGAAGCCCTAGCCTAGCCATGGTCG-G 35
consensus_8820#1      TGGGCTCTCTCCCACGACGAAACGAGCGGCCCACGAAAATTTCGCCGCGCCGCGGCCGCA 60
                                                  * *** ***    * ***  ***  ** **  

consensus_8820#0      TGGAGGCC---GCC--GGCGACAGTGACCGGCGAGGGCGAGGCGGTGCCGGCG--GTGGT 88
consensus_8820#1      TCGGAGCCCTAGCCCAGCCGCCGGAGTCCGGCGCCAGCGGCGGCGAGGCGGCGAAGTGCG 120
                      * *  ***   ***  * ** * * * ******   ***  *  * * *****  ***  

consensus_8820#0      GGGGAGAGAGATGTCGGTGAGGATAAAGGCGGTGGTGGACAGGTTCGTGAAGGAGCTGAA 148
consensus_8820#1      GGGGAGGGAGATGTCGGTGCGGATCAAGGCGGTGGTGGACAGGTTCGTGAAGGAGCTGCA 180
                      ****** ************ **** ********************************* *

consensus_8820#0      GGAGGCGCTGGACGCGGACATCCAGGACCGCATCATGAAGGAGCGGGAGATGCAGAGCTA 208
consensus_8820#1      GGAGGCGCTGGACGCGGACATCCAGGATCGCGTCATGAAGGAGCGGGAGATGCAGAGCTA 240
                      *************************** *** ****************************

consensus_8820#0      CATCGAGGAGCGCGAGCGCGAGGTCGCCGAGCGGGAGGCCGCGTGGAAGGCCGAGCTATC 268
consensus_8820#1      CATCCAGGAGCGGGAGCGCGAGGTCGCCGAGCGGGAGGCCGCCTGGAAGGCCGAGCTCTC 300
                      **** ******* ***************************** ************** **

consensus_8820#0      CCGCCGCGAGGCAGAAATTGCGCGACAAGAAGCAAGGCTGAAAATTGAAAGGGAGAACTT 328
consensus_8820#1      CCGCCGCGAGGCTGAGATTGCGCGGCAAGAGGCAAGGCTGAAGATGGAAAAGGAGAACTT 360
                      ************ ** ******** ***** *********** ** **** *********

consensus_8820#0      GGAGAAAGAAAAGAGTGTCCTCATGGGAACTGCTTCAAGCCAGGATAACCAAGACGGGGC 388
consensus_8820#1      AGAGAAGGAAAAGAGCGTGCTCATGGGCACTGCTTCGAATCAGGACAACCAAGACGGTGC 420
                       ***** ******** ** ******** ******** *  ***** *********** **

consensus_8820#0      CCTGGAAATCACAGTCAGTGGTGAGAAATACAGGTGCCTTCGCTTCTCCAAGGCAAAGAA 448
consensus_8820#1      CCTCGAGATCACTGTTAGCGGTGAAAAGTACAGGTGCCTTCGTTTCTCTAAGGCAAAGAA 480
                      *** ** ***** ** ** ***** ** ************** ***** ***********

consensus_8820#0      GTGAGATATGGGCTACAGAAGTTGACAAGAATAATCGTGGATGGTACACCAATAGTAGCA 508
consensus_8820#1      ATGAGATATGAACT-TAGGCATCGAGAAG--TAGTTGTGTAAGACAGATTCATGGTA--A 535
                       *********  **  **   * ** ***  ** * *** * *  * *   ** ***  *

consensus_8820#0      TTTTTTAGCCTTAGATGTGATTCAAGCTTGGGTGCTTCAT----GAAATCCTGCAGTGTC 564
consensus_8820#1      TGGTAAAACCTTAT-TTTGTTTCAAATTGGATTCTTTTGTACAGGGAATTCTGAAACGTG 594
                      *  *  * *****  * ** *****  * *  *  **  *    * *** *** *  ** 

consensus_8820#0      CAAAAATGAGGAAAGATACTCCTCTCTTTTTATGGTGTAAGGTAGCTACCAGGCAGTGTA 624
consensus_8820#1      CGTAAACTCAGTAAAATATCCATAG----------------------------------- 619
                      *  ***    * ** ***  * *                                     

consensus_8820#0      GTCTCTGCAGCCATCTGATTCCTCTTAATCGAATCATTGAGCATCAAAGGTGATCTGAGC 684
consensus_8820#1      ------------------------------------------------------------
                                                                                  

consensus_8820#0      CTGCCATTTGCGTGTCTTGGCATGTAGTAACATGGACTTATATTAGATCTAGCTTATGCC 744
consensus_8820#1      ------------------------------------------------------------
                                                                                  

consensus_8820#0      ACAAATGGCTTCATGGCAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 801
consensus_8820#1      ---------------------------------------------------------