cluster # 8824

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8824 cluster # 8824 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8824#0 length = 674 sequences # 1

consensus_8824#1 length = 591 sequences # 5

consensusID : consensus_8824#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 674
fasta sequence

                              [ACCCNGCCCCCCCCTTCGAAGNTCGACCCAACGCNTCCCCCCAAAACAAACCAGCAGCTAGCCTAGCTGCCAGATCCCAGCNACTAGTGACCATTGAGCCCTTTCCTTCCTTGGCNCTCCCTTTGCCCTAGGCTAAGCTAGATNCCCTCCTTTCTCCCGTTCGTTACCGGATGGTTAAGCTGAGAACCCATGGGAAGAACAGGNCCGGAGGAGNACGGAGGAGGAGGGCCCAGCAGGATGCTGAGGGAGCAGAAGGCCAGGCTCTACATCATCCAGGCGATGCGTCGTCATGCTCCTCTGCTATCATGACTGATCTGAATGATGGATGGTCTGAATCCTGCTGCTGTTCATCCGTCCTGGCGATGCATGGTTTCTGAACTGCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGGTTCTAGGAATATTGTAGGCCTGACAAATTCTTTGGTGTATATAGGATAGTTTTGGGATAGATCTACTGACGGTTTTGATCATCTTCTTCTTCTCTCTTTTTTTTTGTGAGTTTGTGGTACTCCTAAGTCCTACAATGGCAAGGATGTACGTGTATCTTGGTGTCCGGCAACGTTCTTGGATCTTGTCCCGTGTTCTTCTGTTCTCAATCAGAAATGCAAAATGAGAAAAAAAAATCTGTCTACTGGTAAAAAAA]

[+] EMBL C98329               [ACCCNGCCCCCCCCTTCGAAGNTCGACCCAACGCNTCCCCCCAAAACAAACCAGCAGCTAGCCTAGCTGCCAGATCCCAGCNACTAGTGACCATTGAGCCCTTTCCTTCCTTGGCNCTCCCTTTGCCCTAGGCTAAGCTAGATNCCCTCCTTTCTCCCGTTCGTTACCGGATGGTTAAGCTGAGAACCCATGGGAAGAACAGGNCCGGAGGAGNACGGAGGAGGAGGGCCCAGCAGGATGCTGAGGGAGCAGAAGGCCAGGCTCTACATCATCCAGGCGATGCGTCGTCATGCTCCTCTGCTATCATGACTGATCTGAATGATGGATGGTCTGAATCCTGCTGCTGTTCATCCGTCCTGGCGATGCATGGTTTCTGAACTGCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGGTTCTAGGAATATTGTAGGCCTGACAAATTCTTTGGTGTATATAGGATAGTTTTGGGATAGATCTACTGACGGTTTTGATCATCTTCTTCTTCTCTCTTTTTTTTTGTGAGTTTGTGGTACTCCTAAGTCCTACAATGGCAAGGATGTACGTGTATCTTGGTGTCCGGCAACGTTCTTGGATCTTGTCCCGTGTTCTTCTGTTCTCAATCAGAAATGCAAAATGAGAAAAAAAAATCTGTCTACTGGTAAAAAAA]




>consensus_8824#0
ACCCNGCCCCCCCCTTCGAAGNTCGACCCAACGCNTCCCCCCAAAACAAACCAGCAGCTA
GCCTAGCTGCCAGATCCCAGCNACTAGTGACCATTGAGCCCTTTCCTTCCTTGGCNCTCC
CTTTGCCCTAGGCTAAGCTAGATNCCCTCCTTTCTCCCGTTCGTTACCGGATGGTTAAGC
TGAGAACCCATGGGAAGAACAGGNCCGGAGGAGNACGGAGGAGGAGGGCCCAGCAGGATG
CTGAGGGAGCAGAAGGCCAGGCTCTACATCATCCAGGCGATGCGTCGTCATGCTCCTCTG
CTATCATGACTGATCTGAATGATGGATGGTCTGAATCCTGCTGCTGTTCATCCGTCCTGG
CGATGCATGGTTTCTGAACTGCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGG
TTCTAGGAATATTGTAGGCCTGACAAATTCTTTGGTGTATATAGGATAGTTTTGGGATAG
ATCTACTGACGGTTTTGATCATCTTCTTCTTCTCTCTTTTTTTTTGTGAGTTTGTGGTAC
TCCTAAGTCCTACAATGGCAAGGATGTACGTGTATCTTGGTGTCCGGCAACGTTCTTGGA
TCTTGTCCCGTGTTCTTCTGTTCTCAATCAGAAATGCAAAATGAGAAAAAAAAATCTGTC
TACTGGTAAAAAAA

consensusID : consensus_8824#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 591
fasta sequence

                              [AAACAACAGCAGCTAGCTAGCTGCAGATCCAGCACTAGTGACATTGAGCCTTTCTTCTTGCTCTTCCTTTGCCTAGCTAGCTAGATTCTCTTCTTCTCCGTTCGTTACGGATGGTTAAGCTGAGGATCCATGGGAAGAACAGGGCCGGAGGAGGAGGAGGAGGAGGGCTCAGCAGGATGCTGAGG-GAGCAGAAGGCCAGGCTCTACATCATCAGGCGATGCGT-CGTCATGCTCCTCTGCTATCATGACTGATCTGAATGATGATGGTCTGAATCTGCTGCTGTTCATCGTCCTGGCGATGCATGGTTTCTGAACTGCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGGTTCTAGGGATATTGTA-GGCCTGACAAATTCTTTGGTGTATATAGGATAGTTTTGGGATAGATCTACTGACGGTTTTGATCATCTTCTTCTCTTTTTTTTGTGAGTTTGTGGTACTCCTAAGTCCTACAATGGCAAGGATGTACGTGTATCTTGGTGTCCGGCAACGTTCTTGGATCTTGTCCCGTGTTCTTCTGTTCTCAATCAGAAATGCAAAATGAGAAAAAAAATCTGTCTAC]

[+] EMBL CB096466             [AAACAACAGCAGCTAGCTAGCTGCAGATCCAGCACTAGTGACATTGGGCCTTTCTTCTTGCTCTTCCTTTGCCTAGCTGGCTAGATTCTCTTCTTCTCCGTTCATTAAAGATGGTTAAGCTGAGGATCCATGGGAAGAACAGGGCCGGAGGAGGAGGAGGAGGAGGGCTCAGCAGGATGCTGAGG GAGCAGAAGGCCAGGCTCTACATCATCAGGCGATGCGT CGTCATGCTCCTCTGCTACCATGACTGATCTGAATGATGATGGTCTGAATCTGCTGCTGTTCATCGTCCTGGCGATGCATGGTTTCTGAACTGCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGGTTCTAGGAATATTGTA GGCCTGACAAATTCTTTGGTGTATATAGGATAGTTTTGGGATAGATCTACTGACGGTTTTGATCATCTTCTTCTCTTTTTTTTGTGAGTTTGTGGTACTCCTAAGTCCTACAATGGCAAGGATGTACGTGTATCTTGGTGTCCGGCAACGTTCTTGGATCTTGTCCCGTGTTCTTCTGTTCTCAATCAGAAATGCAAAATGAGAAAAAAAATCTGTCTAC]
[+] EMBL OS2007A              [       AGCAGCTAGCTAGCTGCAGATCCAGCACTAGTGACATTGAGCCTTTCTTCTTGCTCTTCCTTTGCCTAGCTAGCTAGATTCTCTTCTTCTCCGTTCGTTACGGATGGTTAAGCTGAGGATCCATGGGAAGAACAGGGCCGGAGGAGGAGGAGGAGGAGGGCTCAGCAGGATGCTGAGG GAGCAGAAGGCCAGGCTCTACATCATCAGGCGATGCGT CGTCATGCTCCTCTGCTATCATGACTGATCTGAATGATGATGGTCTGAATCTGCTGCTGTTCATCGTCCTGGCGATGCATGGTTTCTGAACTGCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGGTTCTAGGGATATTGTAGGGCCTTACAAATTCTTTGGTGTATATAGGATA                                                                                                                                                                                            ]
[+] EMBL OSC16291             [       AGCAGCTAGCTAGCTGCAGATCCAGCACTAGTGACATTGAGCCTTTCTTCTTGCTCTTCCTTTGCCTAGCTAGCTAGATTCTCTTCTTCTCCGTTCGTTACGGATGGTTAAGCTGAGGATCCATGGGAAGAACAGGGCCGGAGGAGGAGGAGGNGGAGGGCTCAGCAGGATGCTGAGGCGAGCAGAAGGCCAGGCTCTACATCATCAGGCGATGCGT CGTCATGCTCCTCTGCTATCATGACTGATCTGAATNATGATGGTCTGAATCTGCTGCTGTTCATCGTCCTGGCGATGCATGGTTTCTGAACTNCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGGTTCTAGGNATATTGTA GGCCTAACAAATTCTTTNGTGTATATAG                                                                                                                                                                                                ]
[+] EMBL OSC30351             [              AGCTAGCTGCAGATCCAGCACTAGTGACATTGAGCCTTACTTC TCCTNTTCCTTTGCCTAGCTAGCTAGATTCTCTTCTTCTCCGTTCGTTACGGATGGTTAAGCTGAGGATCCATGGGAAGAACAGGGCCGGAGGAGGAGGAGNAGGAGNGCTCAGCAGGATGCTGAGGNGAGCAGAAGGCCAGGCTCTACATCATCAGGCGATGCGT CGTCATGCTCCTCTGCTATCATGACTGATCTGAATNATGATGGTCTGAATCTGCTGCTGTTCATCGTCCTGGCGATGCATGGTTTCTGAACTGCTACTACTGCTCT                                                                                                                                                                                                                                                                       ]
[+] EMBL OSC29641             [              AGCTAGCTCAAGATCCAGCACTAGTGACATTGAGCCTTTCTTC TCCNCTTCCTTTGCCTAGCTAGCTAGATTCTCTTCTTCTNCGTTCGTTACGGATGGTTAAGCTGAGGATCCATGGGAAGAACAGGGNCGGAGGAGGAGGAGGAGNAGGGCTCAGCAGGATGCTGAGGAGAGCAGAAGGCCAGGCTCTACATCATCAGGCGATGCGTCCGTCATNCTCCTCTGCTATCATGACTGA                                                                                                                                                                                                                                                                                                                                                     ]




>consensus_8824#1
AAACAACAGCAGCTAGCTAGCTGCAGATCCAGCACTAGTGACATTGAGCCTTTCTTCTTG
CTCTTCCTTTGCCTAGCTAGCTAGATTCTCTTCTTCTCCGTTCGTTACGGATGGTTAAGC
TGAGGATCCATGGGAAGAACAGGGCCGGAGGAGGAGGAGGAGGAGGGCTCAGCAGGATGC
TGAGGGAGCAGAAGGCCAGGCTCTACATCATCAGGCGATGCGTCGTCATGCTCCTCTGCT
ATCATGACTGATCTGAATGATGATGGTCTGAATCTGCTGCTGTTCATCGTCCTGGCGATG
CATGGTTTCTGAACTGCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGGTTCTA
GGGATATTGTAGGCCTGACAAATTCTTTGGTGTATATAGGATAGTTTTGGGATAGATCTA
CTGACGGTTTTGATCATCTTCTTCTCTTTTTTTTGTGAGTTTGTGGTACTCCTAAGTCCT
ACAATGGCAAGGATGTACGTGTATCTTGGTGTCCGGCAACGTTCTTGGATCTTGTCCCGT
GTTCTTCTGTTCTCAATCAGAAATGCAAAATGAGAAAAAAAATCTGTCTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8824#0      ACCCNGCCCCCCCCTTCGAAGNTCGACCCAACGCNTCCCCCCAAAACAAACCAGCAGCTA 60
consensus_8824#1      -------------------------------------------AAACAA--CAGCAGCTA 15
                                                                 ******  *********

consensus_8824#0      GCCTAGCTGCCAGATCCCAGCNACTAGTGACCATTGAGCCCTTTCCTTCCTTGGCNCTCC 120
consensus_8824#1      GC-TAGCTGC-AGATCCAG--CACTAGTGAC-ATTGAGCC--TTTCTTCTT--GCTCTTC 66
                      ** ******* ******     ********* ********  ** **** *  ** ** *

consensus_8824#0      CTTTGCCCTAGGCTAAGCTAGATNCCCTCCTTTCTCCCGTTCGTTACCGGATGGTTAAGC 180
consensus_8824#1      CTTTGCCT--AGCTA-GCTAGATTCTCTTCTTCT--CCGTTCGTTAC-GGATGGTTAAGC 120
                      *******    **** ******* * ** ***    *********** ************

consensus_8824#0      TGAGAACCCATGGGAAGAACAGGNCCGGAGGAGNACGGAGGAGGAGGGCCCAGCAGGATG 240
consensus_8824#1      TGAGGATCCATGGGAAGAACAGGGCCGGAGGAGGA-GGAGGAGGAGGGCTCAGCAGGATG 179
                      **** * **************** ********* * ************* **********

consensus_8824#0      CTGAGGGAGCAGAAGGCCAGGCTCTACATCATCCAGGCGATGCGTCGTCATGCTCCTCTG 300
consensus_8824#1      CTGAGGGAGCAGAAGGCCAGGCTCTACATCATC-AGGCGATGCGTCGTCATGCTCCTCTG 238
                      ********************************* **************************

consensus_8824#0      CTATCATGACTGATCTGAATGATGGATGGTCTGAATCCTGCTGCTGTTCATCCGTCCTGG 360
consensus_8824#1      CTATCATGACTGATCTGAATGATG-ATGGTCTGAATC-TGCTGCTGTTCATC-GTCCTGG 295
                      ************************ ************ ************** *******

consensus_8824#0      CGATGCATGGTTTCTGAACTGCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGG 420
consensus_8824#1      CGATGCATGGTTTCTGAACTGCTACTACTGCTCTTTGGTTCTGTTCATCTGAGTTTTCGG 355
                      ************************************************************

consensus_8824#0      TTCTAGGAATATTGTAGGCCTGACAAATTCTTTGGTGTATATAGGATAGTTTTGGGATAG 480
consensus_8824#1      TTCTAGGGATATTGTAGGCCTGACAAATTCTTTGGTGTATATAGGATAGTTTTGGGATAG 415
                      ******* ****************************************************

consensus_8824#0      ATCTACTGACGGTTTTGATCATCTTCTTCTTCTCTCTTTTTTTTTGTGAGTTTGTGGTAC 540
consensus_8824#1      ATCTACTGACGGTTTTGATCATCTTCTTCTC------TTTTTTTTGTGAGTTTGTGGTAC 469
                      ******************************       ***********************

consensus_8824#0      TCCTAAGTCCTACAATGGCAAGGATGTACGTGTATCTTGGTGTCCGGCAACGTTCTTGGA 600
consensus_8824#1      TCCTAAGTCCTACAATGGCAAGGATGTACGTGTATCTTGGTGTCCGGCAACGTTCTTGGA 529
                      ************************************************************

consensus_8824#0      TCTTGTCCCGTGTTCTTCTGTTCTCAATCAGAAATGCAAAATGAGAAAAAAAAATCTGTC 660
consensus_8824#1      TCTTGTCCCGTGTTCTTCTGTTCTCAATCAGAAATGCAAAATGAGAAAAAAAA-TCTGTC 588
                      ***************************************************** ******

consensus_8824#0      TACTGGTAAAAAAA 674
consensus_8824#1      TAC----------- 591
                      ***