These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1227 fasta sequence [CGAGCCCTCTTCTTCCCGGCAACCGCGGCGGCGGAGACGAGCGCGACGCGGCGATTCCCCCCAATTGCTCCTCCCGCTTCCGCTCCATCTGGACGGGCTCGTACTACCGATGCGCCGTTGATTTCTGCAGGGCGCAGCACTTGAGGTTGTTTAGATCGGCCTGCGGCGCGAGCTCGGGAGCTGTATACATGGAGAAAGCGAGGTTGAGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATCTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGTTCTGGTTATTCCCGGAAATCCAGGTATCGTTGCATTCTACAAGGACTTTGTTGAAGAGCTCTATGAGAACCTCGGTGGGCAAGCATCTATTACAGCGATTGGGCATATTTCACATAGCAAAAAGGATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAGGTCGATTTCATTGAGCAAGAATTTCAACATTCGGAACAATCATTAGTTCTGGTTGGTCATTCAATTGGTGCCTACATATGCCTGGAAATCTTCAAAAGACTTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCCATTTTTAACACTCAACAAGAAGTCCATGGAGCAATCAGCTATTGGATATATTGCAAGGTCATCTCTCCTAAGTAAAGGGGTTAGCTCATTTGTTTCTTTTATCGGATCACTCCAAGCTTCAGTAACTAGGGGCATCATGAGAAGGTTACTTGGACCTTCATGGTCTGTAACGGCTGTCGAAGCTACATGCGGCCATCTCTTATGGTACCATACGATGCGTAATGTTCTCTTCATGGCAATGACAGAGTTCACGAAGCTCTCTGAAGAACCGGACTGGAATTTCATCAGTGCAAAACAGGACCAGATTGCATTTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAGATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATACACACGGCTATTGCTGCACGGAAGCTGGATCGTTTTGGGCTGCAGACTACGTGGCTAATTTGATTAAAACTAAATTCTGATTGGAAATTCAAGATGAAAATTGTACCGTAGTCAGACTCAGTATTTTTATCCTCCAAAGGGAGATAGTAAGAATAATGAAATAAACCGGTTGGATCAACCTCATCAATCACAAATTCACAATCGTCGT] [+] EMBL AK103121 [CGAGCCCTCTTCTTCCCGGCAACCGCGGCGGCGGAGACGAGCGCGACGCGGCGATTCCCCCCAATTGCTCCTCCCGCTTCCGCTCCATCTGGACGGGCTCGTACTACCGATGCGCCGTTGATTTCTGCAGGGCGCAGCACTTGAGGTTGTTTAGATCGGCCTGCGGCGCGAGCTCGGGAGCTGTATACATGGAGAAAGCGAGGTTGAGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATCTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGTTCTGGTTATTCCCGGAAATCCAGGTATCGTTGCATTCTACAAGGACTTTGTTGAAGAGCTCTATGAGAACCTCGGTGGGCAAGCATCTATTACAGCGATTGGGCATATTTCACATAGCAAAAAGGATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAGGTCGATTTCATTGAGCAAGAATTTCAACATTCGGAACAATCATTAGTTCTGGTTGGTCATTCAATTGGTGCCTACATATGCCTGGAAATCTTCAAAAGACTTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCCATTTTTAACACTCAACAAGAAGTCCATGGAGCAATCAGCTATTGGATATATTGCAAGGTCATCTCTCCTAAGTAAAGGGGTTAGCTCATTTGTTTCTTTTATCGGATCACTCCAAGCTTCAGTAACTAGGGGCATCATGAGAAGGTTACTTGGACCTTCATGGTCTGTAACGGCTGTCGAAGCTACATGCGGCCATCTCTTATGGTACCATACGATGCGTAATGTTCTCTTCATGGCAATGACAGAGTTCACGAAGCTCTCTGAAGAACCGGACTGGAATTTCATCAGTGCAAAACAGGACCAGATTGCATTTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAGATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATACACACGGCTATTGCTGCACGGAAGCTGGATCGTTTTGGGCTGCAGACTACGTGGCTAATTTGATTAAAACTAAATTCTGATTGGAAATTCAAGATGAAAATTGTACCGTAGTCAGACTCAGTATTTTTATCCTCCAAAGGGAGATAGTAAGAATAATGAAATAAACCGGTTGGATCAAC ] [+] EMBL AK059634 [ GGAACAATCATTAGTTCTGGTTGGTCATTCAATTGGTGCCTACATATGCCTGGAAATCTTCAAAAGACTTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCCATTTTTAACACTCAACAAGAAGTCCATGAAGCAATCAGCTATTGGATATATTGCAAGGTCATCTCTCCTAAGTAAAGGGGTTAGCTCATTTGTTTCTTTTATCGGATCACTCCAAGCTTCAGTAACTAGGGGCATCATGAGAAGGTTACTTGGACCTTCATGGTCTGTAACGGCTGTCGAAGCTACATGCGGCCATCTCTTATGGTACCATACGATGCGTAATGTTCTCTTCATGGCAATGACAGAGTTCACGAAGCTCTCTGAAGAACCGGACTGGAATTTCATCAGTGCAAAACAGGACCAGATTGCATTTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAGATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATACACACGGCTATTGCTGCACGGAAGCTGGATCGTTTTGGGCTGCAGACT GTGGCTAATTTGATTAAAACTAAATTCTGATTGGAAATTCAAGATGAAAATTGTACCGTAGTCAGACTCAGTATTTTTATCCTCCAAAGGGAGATAGTAAGAATAATGAAATAAACCGGTTGGATCAACCTCATCAATCACAAATTCACAATCGTCGT] [-] EMBL CF280843 [ AGATGAAAATTGTCCCGTAGTCAGACTCAGTATTTTTATCCTCCAAAGGGAGATAGTAAGAATAATGAAATAACCCGGTTGGATCACCCTCATCAATCACA ] consensusID : consensus_8827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 811 fasta sequence [GACGAGACAAGGGGGGACGAGACAAGGGGGTTTTCGTTGCATGAACAAATTGATCACAAGGTCGATTTCATTGAGCAAGAATTTCAACATTCGGAACAATCATTAGTTCTGGTTGGTCATTCAATTGGTGCCTACATATGCCTGGAAATCTTCAAAAGACTTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCCATTTTTAACACTCAACAAGAAGTCCATGAAGCAATCAGCTATTGGATATATTGCAAGGTCATCTCTCCTAAGTAAAGGGGTTAGCTCATTTGTTTCTTTTATCGGATCACTCCAAGCTTCAGTAACTAGGGGCATCGTGACAAGGTTACCTTGGACCTTCATGGTCTGTAACGGCTGTCGAAGCTACATGCGGCCATCTCTTATGGTACCATACGATGCGTAATGTTCTCTTCATGGCAATGACAGAGTTCACGAAGCTCTCTGAAGAACCGGACTGGAATTTCATCAGTGCAAAACAGGACCAGATTGCATTTCTGTTTGGTGTGGACGATCACTGGGGTNCGCTTGCACACTTGGGAAGAGATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATACACACGGGCTATTGCTGCACGGAAGCTGGATCGTTTTGGGCTGCAGACTACGTGGCTAATTTGATTAAAACTACATTCTGATTGGNAAANTCAAGATGAAAATTGTACCGNCNTCAGACTCCANTATTTTTTATCCTNCAAAGGGGAGGATAGTAAGGAATAANGGAAATAACCCGGTTGGGANCNACCCTCCTCCATT] [+] EMBL CA764877 [GACGAGACAAGGGGGGACGAGACAAGGGGGTTTTCGTTGCATGAACAAATTGATCACAAGGTCGATTTCATTGAGCAAGAATTTCAACATTCGGAACAATCATTAGTTCTGGTTGGTCATTCAATTGGTGCCTACATATGCCTGGAAATCTTCAAAAGACTTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCCATTTTTAACACTCAACAAGAAGTCCATGAAGCAATCAGCTATTGGATATATTGCAAGGTCATCTCTCCTAAGTAAAGGGGTTAGCTCATTTGTTTCTTTTATCGGATCACTCCAAGCTTCAGTAACTAGGGGCATCGTGACAAGGTTACCTTGGACCTTCATGGTCTGTAACGGCTGTCGAAGCTACATGCGGCCATCTCTTATGGTACCATACGATGCGTAATGTTCTCTTCATGGCAATGACAGAGTTCACGAAGCTCTCTGAAGAACCGGACTGGAATTTCATCAGTGCAAAACAGGACCAGATTGCATTTCTGTTTGGTGTGGACGATCACTGGGGTNCGCTTGCACACTTGGGAAGAGATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATACACACGGGCTATTGCTGCACGGAAGCTGGATCGTTTTGGGCTGCAGACTACGTGGCTAATTTGATTAAAACTACATTCTGATTGGNAAANTCAAGATGAAAATTGTACCGNCNTCAGACTCCANTATTTTTTATCCTNCAAAGGGGAGGATAGTAAGGAATAANGGAAATAACCCGGTTGGGANCNACCCTCCTCCATT] consensusID : consensus_8827#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 627 fasta sequence [CCCGGCAACCGCGGCGGCGGAGACGAGCGCGACGCGGCGATTCCCCCCAATTGCTCCTCCCGCTTCCGCTCCATCTGGACGGGGCGCAGCACTTGAGGTTGTTTAGATCGGCCTGCGGCGCGAGCTCGGGAGCTGTATACATGGAGAAAGCGAGGTTGAGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAGCTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGTTCTGGTTATTCCCGGAAATCCAGGTATCGTTGCATTCTACAAGGACTTTGTTGAAGAGCTCTATGAGAAACCTCGGTGGGCAAGCATCTATTACAGCGATTGGGCATATTTCACATAGCAAAAAGGATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAGGGTCGATTTCATTGAGCAAGAATTTCAACATTCGGAAC-ATCATTAGTTCTGGGTTGGTCATTCAATTGGTGCCTACATATGCCTGGAAATCTTCAAAAGACTTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCCATTTTTAACACTCAACAAGAAGTCCATGAAGCAATCAGCTATTGGATATATTGC] [+] EMBL CF280842 [CCCGGCAACCGCGGCGGCGGAGACGAGCGCGACGCGGCGATTCCCCCCAATTGCTCCTCCCGCTTCCGCTCCATCTGGACGGGGCGCAGCACTTGAGGTTGTTTAGATCGGCCTGCGGCGCGAGCTCGGGAGCTGTATACATGGAGAAAGCGAGGTTGAGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAGCTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGTTCTGGTTATTCCCGGAAATCCAGGTATCGTTGCATTCTACAAGGACTTTGTTGAAGAGCTCTATGAGAAACCTCGGTGGGCAAGCATCTATTACAGCGATTGGGCATATTTCACATAGCAAAAAGGATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAGGGTCGATTTCATTGAGCAAGAATTTCAACATTCGGAAC ATCATTAGTTCTGGGTTGGTCATTCAATTGGTGCCTACATATGCCTGGAAATC ] [+] EMBL CA999222 [ GGTTGTTTAGATCGGCCTGCGGCGCGAGCTCGGGAGCTGTATACATGGAGAAAGCGAGGTTGAGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAGCTTTGCGACGGATTTTCTCGAGATAAGGGCCAAAGAGCCGTCTGTTCATGTTCTGGTTATTCCCGGAAATCCAGGTATCGTTGCATTCTACAAGGACTTTGTTGAAGAGCTCTATGAG AACCTCGGTGGGCAAGCATCTATTACAGCGATTGGGCATATTTCACATAGCAAAAAGGATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAA GGTCGATTTCATTGAGCAAGAATTTCAACATTCGGAACAATCATTAGTTCT GGTTGGTCATTCAATTGGTGCCTACATATGCCTGGAAATCTTCAAAAGACTTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCCATTTTTAACACTCAACAAGAAGTCCATGAAGCAATCAGCTATTGGATATATTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8827#0 ----------------------------------CGAGCCCTCTTCTTCCCGGCAACCGC 26 consensus_8827#2 ------------------------------------------------CCCGGCAACCGC 12 consensus_8827#1 GACGAGACAAGGGGGGACGAGACAAGGGGGTTTTCGTTGCATGAACAAATTGATCACAAG 60 * ** consensus_8827#0 GGCGGCGGAGACGAGCGCGA-CGCGGCGATTCCCCCCAATTGCTCCTCCCGCTT--CCGC 83 consensus_8827#2 GGCGGCGGAGACGAGCGCGA-CGCGGCGATTCCCCCCAATTGCTCCTCCCGCTT--CCGC 69 consensus_8827#1 GTCGATTTCATTGAGCAAGAATTTCAACATTCGGAACAATCATTAGTTCTGGTTGGTCAT 120 * ** **** ** **** **** * * * * ** * consensus_8827#0 TCCATCTGGACGGGCTCGTACTACCGATGCGCCGTTGATTTCTGCAGGGCGCAGCACTTG 143 consensus_8827#2 TCCATCTGGACGGG----------------------------------GCGCAGCACTTG 95 consensus_8827#1 TCAATTGGTGCCTACATATGCCTGGAAATCTTCAAAAGACTTC----AGAAGAAGGTGAA 176 ** ** * * * * consensus_8827#0 AGGTTGTTTAGATCGGCCTGCGGCGCGAGCTCGGGAGCTGTA-TACATGGAGAAAGCGAG 202 consensus_8827#2 AGGTTGTTTAGATCGGCCTGCGGCGCGAGCTCGGGAGCTGTA-TACATGGAGAAAGCGAG 154 consensus_8827#1 ACTTTGTGTAGGACTCTATCCATTTTTAACACTCAACAAGAAGTCCATGAAGCAATCAGC 236 * **** *** * * * * * * * * * * **** ** ** * consensus_8827#0 -GTTGAGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACAT-------------CTTTG 248 consensus_8827#2 -GTTGAGAGCTTTCCAGAGGGAGCAAGCCACGGCCAAGACATGTATGGTCTCCAGCTTTG 213 consensus_8827#1 TATTGGATATATTGCAAGGTCATCTCTCCTAAGTAAAGGGGTTAGCTCATTTGTTTCTTT 296 *** ** ** * * * ** * *** * ** consensus_8827#0 CGACGGATTTTCTCGAGATA-AGGGCCAAAGAGCCGTCTGTTCATGTT--CTGGTTATTC 305 consensus_8827#2 CGACGGATTTTCTCGAGATA-AGGGCCAAAGAGCCGTCTGTTCATGTT--CTGGTTATTC 270 consensus_8827#1 TATCGGATCACTCCAAGCTTCAGTAACTAGGGGCATCGTGACAAGGTTACCTTGGACCTT 356 ***** * ** * ** * * * ** ** * *** ** * * consensus_8827#0 CCGGAAATCCAGGTATCGTTGCA-TTCTACAAGGAC-TTTGTTGAAGAGCTCTATGAGAA 363 consensus_8827#2 CCGGAAATCCAGGTATCGTTGCA-TTCTACAAGGAC-TTTGTTGAAGAGCTCTATGAGAA 328 consensus_8827#1 CATGGTCTGTAACGGCTGTCGAAGCTACATGCGGCCATCTCTTATGGTACCATACGATGC 416 * * * * ** * * * * ** * * * ** * * ** ** consensus_8827#0 -CCTCGGTGGGCAAGCATCTATTACAGCGATTGGGCATATTTC--ACATAGCAAAAAGGA 420 consensus_8827#2 ACCTCGGTGGGCAAGCATCTATTACAGCGATTGGGCATATTTC--ACATAGCAAAAAGGA 386 consensus_8827#1 GTAATGTTCTCTTCATGGCAATGACAGAGTTCACGAAGCTCTCTGAAGAACCGGACTGGA 476 * * * ** **** * * * * * ** * * * * *** consensus_8827#0 ----------TGCAGAGCGTGGAC-GATTGTTTTCGTTGCATGAACAAATTGATCACAAG 469 consensus_8827#2 ----------TGCAGAGCGTGGAC-GATTGTTTTCGTTGCATGAACAAATTGATCACAAG 435 consensus_8827#1 ATTTCATCAGTGCAAAACAGGACCAGATTGCATTT-CTGTTTGGTGTGGACGATCACTGG 535 **** * * * * ***** ** ** ** ****** * consensus_8827#0 G--TCGATTTCA---TTGAGCAAGAATTTCAA------CATTCGGAACAA--TCATTAGT 516 consensus_8827#2 GG-TCGATTTCA---TTGAGCAAGAATTTCAA------CATTCGGAACA---TCATTAGT 482 consensus_8827#1 GGTNCGCTTGCACACTTGGGAAGAGATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGT 595 * ** ** ** *** * * ** **** * ** * * ** consensus_8827#0 TCTGG-TT--GGTCATTCAATTGGTGCCTACATATGCCTGGAAATC----TTCAAAAGAC 569 consensus_8827#2 TCTGGGTT--GGTCATTCAATTGGTGCCTACATATGCCTGGAAATC----TTCAAAAGAC 536 consensus_8827#1 CGAAACTGAAGGCCATACACACGGG--CTATTGCTGCACGGAAGCTGGATCGTTTTGGGC 653 * ** *** ** ** *** *** **** * * consensus_8827#0 TTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCC-ATTTTTAACACTCAACAAGAAG 628 consensus_8827#2 TTCAGAAGAAGGTGAAACTTTGTGTAGGACTCTATCC-ATTTTTAACACTCAACAAGAAG 595 consensus_8827#1 TGCAGACTACGTGGCTAATTTGATTAAAACTACATTCTGATTGGNAAANTCAAGATGAAA 713 * **** * * * * **** ** *** ** * ** * * **** * *** consensus_8827#0 TCCATGGAGCAATCAG------CTATTGGATATATTGCAAGGTCATCTCTCCTAAGTAAA 682 consensus_8827#2 TCCATGAAGCAATCAG------CTATTGGATATATTGC---------------------- 627 consensus_8827#1 ATTGTACCGNCNTCAGACTCCANTATTTTTTATCCTNCAAAGGGGAGGATAGTAAGGAAT 773 * * **** **** *** * * consensus_8827#0 GGGGTTAGCTCATTTGTTTCTTTTATCGGATCACTCCAAGCTTCAGTAACTAGGGGCATC 742 consensus_8827#2 ------------------------------------------------------------ consensus_8827#1 AANGGAAATAACCCGGTTGGGANCNACCCTCCTCCATT---------------------- 811 consensus_8827#0 ATGAGAAGGTTACTTGGACCTTCATGGTCTGTAACGGCTGTCGAAGCTACATGCGGCCAT 802 consensus_8827#2 ------------------------------------------------------------ consensus_8827#1 ------------------------------------------------------------ consensus_8827#0 CTCTTATGGTACCATACGATGCGTAATGTTCTCTTCATGGCAATGACAGAGTTCACGAAG 862 consensus_8827#2 ------------------------------------------------------------ consensus_8827#1 ------------------------------------------------------------ consensus_8827#0 CTCTCTGAAGAACCGGACTGGAATTTCATCAGTGCAAAACAGGACCAGATTGCATTTCTG 922 consensus_8827#2 ------------------------------------------------------------ consensus_8827#1 ------------------------------------------------------------ consensus_8827#0 TTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAGATCTCAAAGCGTGCT 982 consensus_8827#2 ------------------------------------------------------------ consensus_8827#1 ------------------------------------------------------------ consensus_8827#0 CCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATACACACGGCTATTGCTGCACGGAA 1042 consensus_8827#2 ------------------------------------------------------------ consensus_8827#1 ------------------------------------------------------------ consensus_8827#0 GCTGGATCGTTTTGGGCTGCAGACTACGTGGCTAATTTGATTAAAACTAAATTCTGATTG 1102 consensus_8827#2 ------------------------------------------------------------ consensus_8827#1 ------------------------------------------------------------ consensus_8827#0 GAAATTCAAGATGAAAATTGTACCGTAGTCAGACTCAGTATTTTTATCCTCCAAAGGGAG 1162 consensus_8827#2 ------------------------------------------------------------ consensus_8827#1 ------------------------------------------------------------ consensus_8827#0 ATAGTAAGAATAATGAAATAAACCGGTTGGATCAACCTCATCAATCACAAATTCACAATC 1222 consensus_8827#2 ------------------------------------------------------------ consensus_8827#1 ------------------------------------------------------------ consensus_8827#0 GTCGT 1227 consensus_8827#2 ----- consensus_8827#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||