These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1674 fasta sequence [CGGCCGCTCGCCGATCACACGCTGACGCGCACACACCGGCGATTTCTCAGCCGCAATCGCCATGGCCACCGCCACCGCCACCTCCCTCGCCTCCTCCGCCGCGCACCGCCGCCTCCCGCCCTCGCGCTCAGCCGCTAGCTCCATCCTGAGAGCCCCCAACCGGGGCCGCCTCTGCCCCGGCTCCCCGTCGGTGCTCCGCGCGTCGTCCTCGTCTCCGTCGTCTCCCCAGCCCACCGCCGGCGGTGATGAGGGGGAGGAGGAGGAGGAGGGGCGGAGGCTGTCGAAGCAGTCGTCGTGGGAGGCGAAGGACTCCGAGGGGGATGACTACCTCTACCGCCTCGGGAAGGAGGCCGACAACATGAACATCGCCGTCGGCGCGCGGAGCGGCATCGTCGACGACCTCTTCGTCGGCAACTTCCTCGGCAAAGACTCGGATATTGTGTTCGATTACCGGCAGAAAGCGACCAGGACGTTTGAGTACCTGCAAGGAGATCATTACATCGCACCCCTCTTCCTTGATAAAGTTGCATGTCATATTGTGAAGAACTACCTTGCACATATTCTTACTATCAAGATTCCCCTTATACTTGGAATCTGGGGTGGAAAAGGCCAAGGGAAAACATTCCAGACTGAACTTATATTTAGAGCAATGGGTGTTGAACCTGTTATTATGTCTGCTGGAGAACTAGAATCTGAGAAAGCAGGAGAACCTGGGAGGCTTATACGTGACCGATACAGGACGGCTTCTCAAGTAATTCAAAACCAAGGGAAAATGAGTGTTTTGATGATCAATGACCTAGATGCTGGTGTTGGAAGATTTGGTAACACACAAATGACAGTAAATAATCAAATTGTGATTGGAACTTTAATGAACTTGGCGGATAATCCAACCAGGGTTAGCATTGGCCAGAAATGGAGAGAATCTGATGTAACACACAGAGTGCCAATAATAGTTACCGGAAATGATTTTTCGACACTGTATGCTCCCTTGATTCGTGATGGGAGGATGGAAAAGTTCTATTGGCAGCCTGGCCGTGAAGATATAATTAACATTGTTCACCGCATGTATATAAAGGATGGTTTGTCTTTCGAGGATGTATCAAAAGTTGTAGACACTTTTCCAAACCAAGCTCTGGACTTTTATGGAGCTTTGAGATCCAGGACATACGATCGGGCAATCTTGCAGTGGGTAGAAGAGATTGGTGGTCATGAACAACTAAATGAAAAGCTTCTCAAGCGAAAGAAAGGAGAGGAGCTTCCAACATTTATTCCTCCAAAGACCACTGTAGATGCGTTGATTGAATCTGGGGACTCTCTGGTGAAAGAGCAAGAACTGATAATGAATTCGAAACTGTCAAAAGAATATATGAAGAATTTAGATGATTAGTTCAAAACAAAAGGTCTAATAGAGAAAGTACTCGAGGTGCCTATCTCAACCCGATTTTGTATATTTTTGCATCTCTGAAAACTGCACCTTTCTTTCTCTCTCTCTTTGGTGCCCCTGCATCCTACATTCTACAGAACAGTTGCATGTGCAAGTATACGATAGTGTATAAAAGAACATGAAAAGGTATACAAGAATTTTTTCGGCTGTGTTTTATGTATTTTAGATATCTTTATATAATCGTTTGTACAATGGTTTGCAACTCTGAACTATATATAATGAACTTCATA] [+] EMBL AK067399 [CGGCCGCTCGCCGATCACACGCTGACGCGCACACACCGGCGATTTCTCAGCCGCAATCGCCATGGCCACCGCCACCGCCACCTCCCTCGCCTCCTCCGCCGCGCACCGCCGCCTCCCGCCCTCGCGCTCAGCCGCTAGCTCCATCCTGAGAGCCCCCAACCGGGGCCGCCTCTGCCCCGGCTCCCCGTCGGTGCTCCGCGCGTCGTCCTCGTCTCCGTCGTCTCCCCAGCCCACCGCCGGCGGTGATGAGGGGGAGGAGGAGGAGGAGGGGCGGAGGCTGTCGAAGCAGTCGTCGTGGGAGGCGAAGGACTCCGAGGGGGATGACTACCTCTACCGCCTCGGGAAGGAGGCCGACAACATGAACATCGCCGTCGGCGCGCGGAGCGGCATCGTCGACGACCTCTTCGTCGGCAACTTCCTCGGCAAAGACTCGGATATTGTGTTCGATTACCGGCAGAAAGCGACCAGGACGTTTGAGTACCTGCAAGGAGATCATTACATCGCACCCCTCTTCCTTGATAAAGTTGCATGTCATATTGTGAAGAACTACCTTGCACATATTCTTACTATCAAGATTCCCCTTATACTTGGAATCTGGGGTGGAAAAGGCCAAGGGAAAACATTCCAGACTGAACTTATATTTAGAGCAATGGGTGTTGAACCTGTTATTATGTCTGCTGGAGAACTAGAATCTGAGAAAGCAGGAGAACCTGGGAGGCTTATACGTGACCGATACAGGACGGCTTCTCAAGTAATTCAAAACCAAGGGAAAATGAGTGTTTTGATGATCAATGACCTAGATGCTGGTGTTGGAAGATTTGGTAACACACAAATGACAGTAAATAATCAAATTGTGATTGGAACTTTAATGAACTTGGCGGATAATCCAACCAGGGTTAGCATTGGCCAGAAATGGAGAGAATCTGATGTAACACACAGAGTGCCAATAATAGTTACCGGAAATGATTTTTCGACACTGTATGCTCCCTTGATTCGTGATGGGAGGATGGAAAAGTTCTATTGGCAGCCTGGCCGTGAAGATATAATTAACATTGTTCACCGCATGTATATAAAGGATGGTTTGTCTTTCGAGGATGTATCAAAAGTTGTAGACACTTTTCCAAACCAAGCTCTGGACTTTTATGGAGCTTTGAGATCCAGGACATACGATCGGGCAATCTTGCAGTGGGTAGAAGAGATTGGTGGTCATGAACAACTAAATGAAAAGCTTCTCAAGCGAAAGAAAGGAGAGGAGCTTCCAACATTTATTCCTCCAAAGACCACTGTAGATGCGTTGATTGAATCTGGGGACTCTCTGGTGAAAGAGCAAGAACTGATAATGAATTCGAAACTGTCAAAAGAATATATGAAGAATTTAGATGATTAGTTCAAAACAAAAGGTCTAATAGAGAAAGTACTCGAGGTGCCTATCTCAACCCGATTTTGTATATTTTTGCATCTCTGAAAACTGCACCTTTCTTTCTCTCTCTCTTTGGTGCCCCTGCATCCTACATTCTACAGAACAGTTGCATGTGCAAGTATACGATAGTGTATAAAAGAACATGAAAAGGTATACAAGAATTTTTTCGGCTGTGTTTTATGTATTTTAGATATCTTTATATAATCGTTTGTACAATGGTTTGCAACTCTGAACTATATATAATGAACTTCATA] consensusID : consensus_883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [TATGGGATAGATAGCTTTGGTATCAGCCNTGTCTAAGGTATACACGTGTCTCACGGAATTCCCGGGTGCAGACACACACAGGCAGTGCACAGCACACAACAGCAGTGCCGAGCTCGGAGGTGGCACTAATGCTGCAAAACCCAGATGTGTCTGGTAATGATTGTGTGTGGCAATGTGTGCTGCGTGGAAAAACATGGCAAACCAGTGTGCTGTGTGCTGCTCTGCTGCTTGTGGTGGCACCCTGGCAATGCACTGACAATGTGCTGACCAGGAACCACGTTGCATGTGCAAGTATACNATAGTGTATAAAAGAACATGAAAAGGTATACAAGAATTTTTTCGGCTGAAAAAAAAAA] [+] EMBL BM420376 [TATGGGATAGATAGCTTTGGTATCAGCCNTGTCTAAGGTATACACGTGTCTCACGGAATTCCCGGGTGCAGACACACACAGGCAGTGCACAGCACACAACAGCAGTGCCGAGCTCGGAGGTGGCACTAATGCTGCAAAACCCAGATGTGTCTGGTAATGATTGTGTGTGGCAATGTGTGCTGCGTGGAAAAACATGGCAAACCAGTGTGCTGTGTGCTGCTCTGCTGCTTGTGGTGGCACCCTGGCAATGCACTGACAATGTGCTGACCAGGAACCACGTTGCATGTGCAAGTATACNATAGTGTATAAAAGAACATGAAAAGGTATACAAGAATTTTTTCGGCTGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_883#0 CGGCCGCTCGCCGATCACACGCTGACGCGCACACACCGGCGATTTCTCAGCCGCAATCGC 60 consensus_883#1 ------------------------------------------------------------ consensus_883#0 CATGGCCACCGCCACCGCCACCTCCCTCGCCTCCTCCGCCGCGCACCGCCGCCTCCCGCC 120 consensus_883#1 ------------------------------------------------------------ consensus_883#0 CTCGCGCTCAGCCGCTAGCTCCATCCTGAGAGCCCCCAACCGGGGCCGCCTCTGCCCCGG 180 consensus_883#1 ------------------------------------------------------------ consensus_883#0 CTCCCCGTCGGTGCTCCGCGCGTCGTCCTCGTCTCCGTCGTCTCCCCAGCCCACCGCCGG 240 consensus_883#1 ------------------------------------------------------------ consensus_883#0 CGGTGATGAGGGGGAGGAGGAGGAGGAGGGGCGGAGGCTGTCGAAGCAGTCGTCGTGGGA 300 consensus_883#1 ------------------------------------------------------------ consensus_883#0 GGCGAAGGACTCCGAGGGGGATGACTACCTCTACCGCCTCGGGAAGGAGGCCGACAACAT 360 consensus_883#1 ------------------------------------------------------------ consensus_883#0 GAACATCGCCGTCGGCGCGCGGAGCGGCATCGTCGACGACCTCTTCGTCGGCAACTTCCT 420 consensus_883#1 ------------------------------------------------------------ consensus_883#0 CGGCAAAGACTCGGATATTGTGTTCGATTACCGGCAGAAAGCGACCAGGACGTTTGAGTA 480 consensus_883#1 ------------------------------------------------------------ consensus_883#0 CCTGCAAGGAGATCATTACATCGCACCCCTCTTCCTTGATAAAGTTGCATGTCATATTGT 540 consensus_883#1 ------------------------------------------------------------ consensus_883#0 GAAGAACTACCTTGCACATATTCTTACTATCAAGATTCCCCTTATACTTGGAATCTGGGG 600 consensus_883#1 ------------------------------------------------------------ consensus_883#0 TGGAAAAGGCCAAGGGAAAACATTCCAGACTGAACTTATATTTAGAGCAATGGGTGTTGA 660 consensus_883#1 ------------------------------------------------------------ consensus_883#0 ACCTGTTATTATGTCTGCTGGAGAACTAGAATCTGAGAAAGCAGGAGAACCTGGGAGGCT 720 consensus_883#1 ------------------------------------------------------------ consensus_883#0 TATACGTGACCGATACAGGACGGCTTCTCAAGTAATTCAAAACCAAGGGAAAATGAGTGT 780 consensus_883#1 ------------------------------------------------------------ consensus_883#0 TTTGATGATCAATGACCTAGATGCTGGTGTTGGAAGATTTGGTAACACACAAATGACAGT 840 consensus_883#1 ------------------------------------------------------------ consensus_883#0 AAATAATCAAATTGTGATTGGAACTTTAATGAACTTGGCGGATAATCCAACCAGGGTTAG 900 consensus_883#1 ------------------------------------------------------------ consensus_883#0 CATTGGCCAGAAATGGAGAGAATCTGATGTAACACACAGAGTGCCAATAATAGTTACCGG 960 consensus_883#1 ------------------------------------------------------------ consensus_883#0 AAATGATTTTTCGACACTGTATGCTCCCTTGATTCGTGATGGGAGGATGGAAAAGTTCTA 1020 consensus_883#1 ------------------------------------------------------------ consensus_883#0 TTGGCAGCCTGGCCGTGAAGATATAATTAACATTGTTCACCGCATGTATATAAAGGATGG 1080 consensus_883#1 ------------------------------------------------------------ consensus_883#0 TTTGTCTTTCGAGGATGTATCAAAAGTTGTAGACACTTTTCCAAACCAAGCTCTGGACTT 1140 consensus_883#1 ------------------------------------------------------------ consensus_883#0 TTATGGAGCTTTGAGATCCAGGACATACGATCGGGCAATCTTGCAGTGGGTAGAAGAGAT 1200 consensus_883#1 ------------------------------------------------------------ consensus_883#0 TGGTGGTCATGAACAACTAAATGAAAAGCTTCTCAAGCGAAAGAAAGGAGAGGAGCTTCC 1260 consensus_883#1 ------------------------------------------TATGGGATAGATAGCTTT 18 * *** ** * consensus_883#0 AACATTTATTCCTCCAAAGACCACTGTAGATGCGTTGATTGAATCTGGGGACTCTCTGGT 1320 consensus_883#1 GGTATCAGCCNTGTCTAAGG----TATACACGTGTC-------TCACGGAATTCCCGGGT 67 ** * *** * ** * * ** ** ** * ** * *** consensus_883#0 GAAAGAGCAAGAACTGATAATGAATTCGAAACTGTCAAAAGAATATATGAAGAATTTAGA 1380 consensus_883#1 GCAG--ACACACACAGGCAGTGCACAGCACACAACAGCAGTGCCGAGCTCGGAGGTGGCA 125 * * ** ** * * ** * * ** * ** * * consensus_883#0 TGATTAGTTCAAAACAAAAG---GTCTAATAGAGAAAGTACTCG---AGGTGCCTATCTC 1434 consensus_883#1 CTAATGCTGCAAAACCCAGATGTGTCTGGTAATGATTGTGTGTGGCAATGTGTGCTGCGT 185 * * * ****** * **** ** ** ** * * *** * consensus_883#0 AACCCGATTTTGTATATTTTTGCATCTCTGAAAACTGCACCTTTCTTTCTCTCTCTCTT- 1493 consensus_883#1 GGAAAAACATGGCAAACCAGTGTGCTGTGTGCTGCTCTGCTGCTTGTGGTGGCACCCTGG 245 * * * * * ** ** * * * * * * ** consensus_883#0 TGGTGCCCCTGCATCCTACATTCTACAGAACA-GTTGCATGTGCAAGTATACGATAGTGT 1552 consensus_883#1 CAATGCACTGACAATGTGCTGACCAGGAACCACGTTGCATGTGCAAGTATACNATAGTGT 305 *** * ** * * * * * ** ******************* ******* consensus_883#0 ATAAAAGAACATGAAAAGGTATACAAGAATTTTTTCGGCTGTGTTTTATGTATTTTAGAT 1612 consensus_883#1 ATAAAAGAACATGAAAAGGTATACAAGAATTTTTTCGGCTGAAAAAAAAAA--------- 356 ***************************************** * consensus_883#0 ATCTTTATATAATCGTTTGTACAATGGTTTGCAACTCTGAACTATATATAATGAACTTCA 1672 consensus_883#1 ------------------------------------------------------------ consensus_883#0 TA 1674 consensus_883#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||