These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1118 fasta sequence [CAATCTCGCCGCCGTCCCCCACCCCGACCAAACCTGAGGTTTCCTTTCTCCCCTCCGTGTCGACGAAGGCCTTCGTCGACCCTCCGCCGCCGCCGCCGCCGCCGCCGACCTTGTCACTCCGGCCGCTGCTCGGCCTCACTCCAAAAGCTCCGACCAGCAGCCGCCGTCCACGATGGCCGAGTAAATCTTGCGGCTGGCGGCGGCGAGATGGTGGTGGTGTCTAGCGGCGGCGGCGGCGGGGGGAACGCGTGGGCGAAGGAGATGACCATCCGCCGCAGGATGGCCAGCATATTCAACAAGACGCAGGACCATTTCTCGTGTCTGAAAGACTACAACGATTATCTAGAAGAGGTTGAGGATATGACTTTCAACCTGATTGAGGGGATAGATGTCGAGGAGATTGAAGCTAAGATTGCCAGGTACCAGCAGGAAAATGCTGAACAGATATACTTGTCCCGGGCTAAAAGGGCTGAAGATCTTGCCGCCGCACTTAAAGCAAGCAGAATGAACCCTGGAAAGGCTGCTGCCAGTGACACGGCTGCTGGAAGCTCCCAGGGCATTAGCAGCAGCGCAGGAGTTCAGGGCCAGTATGCGCCTGCTGCTGTTGGGATGTCTCAGCCCCGGCCGACAGGTATGGCCCCCCAACCAATCGGCGGTTCATCGGATCCACTTCAGGGAGACGATGAGGAGACCATGAGATTACGAGCAGAGCGAGGAGCTCGAGCAGGTGGATGGACTATCGAAATGGGCAAGAGAAGAGCACTAGAGGAAGCGTTCAGCAGCATATTCATCTGATGATCAGATTAGATGCAGCAATACCTTTGTCCGAAGGATACCTGATGAACTCATCGCAGCCTTTCGGACGACTGAAAGATGTTTTCTGCTACAAATATGACTGGCTATGGTCCAATTCTGAATTTTTAAGTATAGTGAAGATTGAGACCGATCAGCGCCAAGTGGCCTGCTGATTGGAAAGATCATCACTTTGCAAGCAGTATAGTTGCATGTTGCTGCATCTATTCATAGCATGAATGTGGTGTTTTTTGCCCTTGTAAAACTCTGGGAAAGATTTTGATACTGAGAGTTCGTCTGTTCTCTCTATGATGCAGTGCTTTGTT] [+] EMBL AK065754 [CAATCTCGCCGCCGTCCCCCACCCCGACCAAACCTGAGGTTTCCTTTCTCCCCTCCGTGTCGACGAAGGCCTTCGTCGACCCTCCGCCGCCGCCGCCGCCGCCGCCGACCTTGTCACTCCGGCCGCTGCTCGGCCTCACTCCAAAAGCTCCGACCAGCAGCCGCCGTCCACGATGGCCGAGTAAATCTTGCGGCTGGCGGCGGCGAGATGGTGGTGGTGTCTAGCGGCGGCGGCGGCGGGGGGAACGCGTGGGCGAAGGAGATGACCATCCGCCGCAGGATGGCCAGCATATTCAACAAGACGCAGGACCATTTCTCGTGTCTGAAAGACTACAACGATTATCTAGAAGAGGTTGAGGATATGACTTTCAACCTGATTGAGGGGATAGATGTCGAGGAGATTGAAGCTAAGATTGCCAGGTACCAGCAGGAAAATGCTGAACAGATATACTTGTCCCGGGCTAAAAGGGCTGAAGATCTTGCCGCCGCACTTAAAGCAAGCAGAATGAACCCTGGAAAGGCTGCTGCCAGTGACACGGCTGCTGGAAGCTCCCAGGGCATTAGCAGCAGCGCAGGAGTTCAGGGCCAGTATGCGCCTGCTGCTGTTGGGATGTCTCAGCCCCGGCCGACAGGTATGGCCCCCCAACCAATCGGCGGTTCATCGGATCCACTTCAGGGAGACGATGAGGAGACCATGAGATTACGAGCAGAGCGAGGAGCTCGAGCAGGTGGATGGACTATCGAAATGGGCAAGAGAAGAGCACTAGAGGAAGCGTTCAGCAGCATATTCATCTGATGATCAGATTAGATGCAGCAATACCTTTGTCCGAAGGATACCTGATGAACTCATCGCAGCCTTTCGGACGACTGAAAGATGTTTTCTGCTACAAATATGACTGGCTATGGTCCAATTCTGAATTTTTAAGTATAGTGAAGATTGAGACCGATCAGCGCCAAGTGGCCTGCTGATTGGAAAGATCATCACTTTGCAAGCAGTATAGTTGCATGTTGCTGCATCTATTCATAGCATGAATGTGGTGTTTTTTGCCCTTGTAAAACTCTGGGAAAGATTTTGATACTGAGAGTTCGTCTGTTCTCTCTATGATGCAGTGCTTTGTT] [+] EMBL CA754929 [ ACCAAACCTGAGGTTTCCTTTCTCCCCTCCGTGTCGACGAAGGCCTTCGTCGACCCTCCGCCGCCGCCGCCGCCGCCGCCGACCTTGTCACTCCGGCCGCTGCTCGGCCTCACTCCAAAAGCTCCGACCAGCAGCCGCCGTCCACGATGGCCGAGTAAATCTTGCGGC GGCGGCGGCGAGATGGTGGTGGTGTCTAGCGGCGGCGGCGGCGGGGGGAACGCGTGGGCGAAGGAGATGACCATCCGCCGCAGGATGGCCAGCATATTCAACAAGACGCAGGACCATTTCTCGTGTCTGAAAGACTACNACGATTATCTAGAAGAGGTTGAGGATATGACTTTCAACCTGATTGAGGGGATAGATGTCGAGGAGATTGAAGCTAAGATTGCCAGGTACCAGCAGGAAAATGCTGAACAGATATACTTGTCCCGGGCTAAAAGGGCTGAAGATCTTGCCGCCGCACTTAAAGCAAGCAGAATGAACCCTGGGAAGGCTGCTGCCAGTGACACGGCTGCTGGAAGCTCCCAGGGCATTAGCAGCAGCGCAGGAGTTCAGGGCCAGTATGCGCC ] consensusID : consensus_8837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 964 fasta sequence [GAGGCGTCGAGATGGTGGTGGCATCCGGTGGAGGGCGGAACGCGTGGGCGAAGGAGATGACCATCCGCCGCAGGATTACCAGCATATTCAACAAGACGCGGGAGCATTTTCCGTCCCTGAAAGATTACAACGACTATCTTGAGGAAGTCGAGGATATGACTTTCAACCTGATCGAGGGGATAGATGTCGAGGTGATTGAAGCTAAAATTGCCAGATATCAACAGGAAAATGCTGAACAGATATATTTGTCCCGGGCTAAAAGGGCCGAAGATCTTGCTGCCGCACTTAAAGCAAGCAGAATGAACCCTGGCAAGGCTGGTGCCAATGACACGGCTGCTGGAAGCTCTCAGGGCATTAGTAGTGGCGCGGGAGTTCAGGAAGGCCAGTATGCGCCTGCTGCTGTTCCCGGTGGGCTAGCTCAGCCTCGGCCAACAGGGATGGCCCCTCAACCGATCGGCGGTTCATCGGTTCCTCTTCAAGGAGATGATGAGGAGACCATGAGGCTACGTGCGGAGAGCGGGGCTCGAGCTGGTGGATGGTCCATCGAAATGTGCAAGAGAAGAGCATTGCAGGAAGCGTTCAGTACCATATTCGTCTGACGGTCAGATTAGACGCAAGAGCACCTAACATGTAGGATGCCTGATAATTTTGTGGACATCCTTTGGATGAGATGATGGGTTTTTACTGACCGATTGACATGGTTGGCTTGGTCCAAACATATGAATTTTGAGCACTTGGGATTGAAGCTCCAATCATCGTCAAGTGGCCTGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCAATCTGGAAAATTGTGCATTTCTGTTTTTGTTCATAGCATATGAATGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCAATCTGGAAAATTGCGCATTTCTGCTTTTGTTCATAGCATATGAATGTTGTGTGCTTGCCTGACTAAATTATCAAAA] [+] EMBL AK103771 [GAGGCGTCGAGATGGTGGTGGCATCCGGTGGAGGGCGGAACGCGTGGGCGAAGGAGATGACCATCCGCCGCAGGATTACCAGCATATTCAACAAGACGCGGGAGCATTTTCCGTCCCTGAAAGATTACAACGACTATCTTGAGGAAGTCGAGGATATGACTTTCAACCTGATCGAGGGGATAGATGTCGAGGTGATTGAAGCTAAAATTGCCAGATATCAACAGGAAAATGCTGAACAGATATATTTGTCCCGGGCTAAAAGGGCCGAAGATCTTGCTGCCGCACTTAAAGCAAGCAGAATGAACCCTGGCAAGGCTGGTGCCAATGACACGGCTGCTGGAAGCTCTCAGGGCATTAGTAGTGGCGCGGGAGTTCAGGAAGGCCAGTATGCGCCTGCTGCTGTTCCCGGTGGGCTAGCTCAGCCTCGGCCAACAGGGATGGCCCCTCAACCGATCGGCGGTTCATCGGTTCCTCTTCAAGGAGATGATGAGGAGACCATGAGGCTACGTGCGGAGAGCGGGGCTCGAGCTGGTGGATGGTCCATCGAAATGTGCAAGAGAAGAGCATTGCAGGAAGCGTTCAGTACCATATTCGTCTGACGGTCAGATTAGACGCAAGAGCACCTAACATGTAGGATGCCTGATAATTTTGTGGACATCCTTTGGATGAGATGATGGGTTTTTACTGACCGATTGACATGGTTGGCTTGGTCCAAACATATGAATTTTGAGCACTTGGGATTGAAGCTCCAATCATCGTCAAGTGGCCTGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCAATCTGGAAAATTGTGCATTTCTGTTTTTGTTCATAGCATATGAATGGTGATTGGAAAAGACCATCCCTTCCCATTCTCAGCAATCTGGAAAATTGCGCATTTCTGCTTTTGTTCATAGCATATGAATGTTGTGTGCTTGCCTGACTAAATTATCAAAA] [-] EMBL CB966668 [ ttGAAGTGATTGAAGCT AAATTGCCAGAAATCAACAGGAAAATGCTGAACAGATATATTTGTCCCGGGCTAAAAGGNCCGAAGATCTTGCTGCCGCACTTAAAGCAAGCAGAATGAACCGTGGCAAGGCTGGTGCCAATGACACGGCTGCTGGAAGCTCTCAGGGCATTAGTAGTGGCGCGGGAGTTCAGGAAGGCCAGTATGCGCCTGCTGCTGTTCCCGGTGGGCTAGCTCAGCCTCGGCCAACAGGGATGGCCCCTCAACCGATCGGCGGTTCATCGGTTCCTCTTCAAGGAGATGATGAGGAGACCATGAGGCTACGTGCGGAGAGAGGGGCTCGAGCTGGTGGATGGTCCATCGAAATGTGCAAGAGAAGAGCATTGCAGGAAGCGTTCAGTACCATATTCGTCTGACGGTCAGATTAGACGCAAGAGCACCTAACATGTAGGATGCCTGATAATTTTGTGGACATCCTTTGGATGAGATGATGGGTTTTTACTGACCGATTGACATGGTTGGCTTGGTCCAAACATATGAATTTTGAGCACTTGGGATTGAAGCTCCAATCATCGTCAAGTGGCCTGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCATTCTGGAAAATTGTGCATTTCTGTTTTTGTTCATAGCATATGAATGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCAATCTGG ] [+] EMBL CB000426 [ AGGCCAGTATGCGCCTGCTGCTGTTCCCGGCCGTCTAGCTCAGCCTCGGCCAACAGGGATGGCCCCTCAACCGATCGGCGGTTCATCGGTTCCTCTTCAAGGAGATGATGAGGAGACCATGAGGCTACGTGCGGAGAGCGGGGCTCGAGCTGGTGGATGGTCCATCGAAATGTGCAAGAGAAGAGCATTGCAGGAAGCGTTCAGTACCATATTCGTCTGACGGTCAGATTAGACGCAAGAGCACCTAACATGTAGGATGCCTGATAATTTTGTGGACATCCTTTGGATGAGATGATGGGTTTTTACTGACCGATTGACATGGTTGGCTTGGTCCAAACATATGAATTTTGAGCACTTGGGATTGAAGCTCCAATCATCGTCAAGTGGCCTGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCAATCTGGAAAATTGTGCATTTCTGTTTTTGTTCATAGCATATGAATGGTGATTGGAAAAGA ] [-] EMBL CB965760 [ tCCGATCGTCGGTTCATCGGTTCCTCTTCAAGGAGATGATGAGGAGACCATGAGGCTACGTGCGGAGAGAGGGGCTCGAGCTGGTGGATGGTCCATCGAAATGTGCAAGAGAAGAGCATTGCAGGAAGCGTTCAGTACCATATTCGTCTGACGGTCAGATTAGACGCAAGAGCACCTAACATGTAGGATGCCTGATAATTTTGTGGACATCCTTTGGATGAGATGATGGGTTTTTACTGACCGATTGACATGGTTGGCTTGGTCCAAACATATGAATTTTGAGCACTTGGGATTGAAGCTCCAATCATCGTCAAGTGGCCTGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCAATCTGGAAAATTGTGCATTTCTGTTTTTGTTCATAGCATATGAATGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCAATCTGGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8837#0 CAATCTCGCCGCCGTCCCCCACCCCGACCAAACCTGAGGTTTCCTTTCTCCCCTCCGTGT 60 consensus_8837#1 ------------------------------------------------------------ consensus_8837#0 CGACGAAGGCCTTCGTCGACCCTCCGCCGCCGCCGCCGCCGCCGCCGACCTTGTCACTCC 120 consensus_8837#1 ------------------------------------------------------------ consensus_8837#0 GGCCGCTGCTCGGCCTCACTCCAAAAGCTCCGACCAGCAGCCGCCGTCCACGATGGCCGA 180 consensus_8837#1 ------------------------------------------------------------ consensus_8837#0 GTAAATCTTGCGGCTGGCGGCGGCGAGATGGTGGTGGTGTCTAGCGGCGGCGGCGGCGGG 240 consensus_8837#1 ----------------GAGGCGTCGAGATGGTGGTGGCATC---------CGGTGGAGGG 35 * **** ************** ** *** ** *** consensus_8837#0 GGGAACGCGTGGGCGAAGGAGATGACCATCCGCCGCAGGATGGCCAGCATATTCAACAAG 300 consensus_8837#1 CGGAACGCGTGGGCGAAGGAGATGACCATCCGCCGCAGGATTACCAGCATATTCAACAAG 95 **************************************** ***************** consensus_8837#0 ACGCAGGACCATTTCTCGTGTCTGAAAGACTACAACGATTATCTAGAAGAGGTTGAGGAT 360 consensus_8837#1 ACGCGGGAGCATTTTCCGTCCCTGAAAGATTACAACGACTATCTTGAGGAAGTCGAGGAT 155 **** *** ***** *** ******** ******** ***** ** ** ** ****** consensus_8837#0 ATGACTTTCAACCTGATTGAGGGGATAGATGTCGAGGAGATTGAAGCTAAGATTGCCAGG 420 consensus_8837#1 ATGACTTTCAACCTGATCGAGGGGATAGATGTCGAGGTGATTGAAGCTAAAATTGCCAGA 215 ***************** ******************* ************ ******** consensus_8837#0 TACCAGCAGGAAAATGCTGAACAGATATACTTGTCCCGGGCTAAAAGGGCTGAAGATCTT 480 consensus_8837#1 TATCAACAGGAAAATGCTGAACAGATATATTTGTCCCGGGCTAAAAGGGCCGAAGATCTT 275 ** ** *********************** ******************** ********* consensus_8837#0 GCCGCCGCACTTAAAGCAAGCAGAATGAACCCTGGAAAGGCTGCTGCCAGTGACACGGCT 540 consensus_8837#1 GCTGCCGCACTTAAAGCAAGCAGAATGAACCCTGGCAAGGCTGGTGCCAATGACACGGCT 335 ** ******************************** ******* ***** ********** consensus_8837#0 GCTGGAAGCTCCCAGGGCATTAGCAGCAGCGCAGGAGTTCAGG---GCCAGTATGCGCCT 597 consensus_8837#1 GCTGGAAGCTCTCAGGGCATTAGTAGTGGCGCGGGAGTTCAGGAAGGCCAGTATGCGCCT 395 *********** *********** ** **** ********** ************** consensus_8837#0 GCTGCTGTT------GGGATGTCTCAGCCCCGGCCGACAGGTATGGCCCCCCAACCAATC 651 consensus_8837#1 GCTGCTGTTCCCGGTGGGCTAGCTCAGCCTCGGCCAACAGGGATGGCCCCTCAACCGATC 455 ********* *** * ******* ***** ***** ******** ***** *** consensus_8837#0 GGCGGTTCATCGGATCCACTTCAGGGAGACGATGAGGAGACCATGAGATTACGAGCAGAG 711 consensus_8837#1 GGCGGTTCATCGGTTCCTCTTCAAGGAGATGATGAGGAGACCATGAGGCTACGTGCGGAG 515 ************* *** ***** ***** ***************** **** ** *** consensus_8837#0 CGAGGAGCTCGAGCAGGTGGATGGACTATCGAAATGGGCAAGAGAAGAGCACTAGAGGAA 771 consensus_8837#1 AGCGGGGCTCGAGCTGGTGGATGGTCCATCGAAATGTGCAAGAGAAGAGCATTGCAGGAA 575 * ** ******** ********* * ********* ************** * ***** consensus_8837#0 GCGTTCAGCAGCATATTCATCTGATGATCAGATTAGATGCAGCAATACCTTTGTCCGAAG 831 consensus_8837#1 GCGTTCAGTACCATATTCGTCTGACGGTCAGATTAGACGCAAGAGCACCTA-ACATGTAG 634 ******** * ******* ***** * ********** *** * **** * ** consensus_8837#0 GATACCTGATGAACTCATCGCAGCCTTTCGGACGAC-TGAAAGATGTTTTCTG--CTACA 888 consensus_8837#1 GATGCCTGATAATTTTGTGGACATCCTTTGGATGAGATGATGGGTTTTTACTGACCGATT 694 *** ****** * * * * * ** *** ** *** * * *** *** * * consensus_8837#0 AATATGACTGGCTATGGTCCAATTCTG-AATTTTTAAGTATAGTGAAGATTGAGAC--CG 945 consensus_8837#1 GACATGGTTGGCT-TGGTCCAAACATATGAATTTTGAGCAC--TTGGGATTGAAGCTCCA 751 * *** ***** ******** * * **** ** * * ****** * * consensus_8837#0 ATCAGCGCCAAGTGGCCTGCTGATTGGAAA-GATCATCACTTT---------GCAAGCAG 995 consensus_8837#1 ATCATCGTCAAGTGGCCTGGTGATTGGAAAAGACCATCCCTTCTCATTCTCAGCAATCTG 811 **** ** *********** ********** ** **** *** **** * * consensus_8837#0 TATAGTTGCATGTTGCTGCATCTATTCATAGCATGAATGTGGTGTTT--------TTTGC 1047 consensus_8837#1 GAAAATTGTGCATTTCTGTTTTTGTTCATAGCATATGAATGGTGATTGGAAAAGACCATC 871 * * *** ** *** * * ********** ***** ** * consensus_8837#0 CCTTGTAAAACTCTGGGA-----AAGATTTTGATACTGAGAGTTCGTCTGTTCTCTCT-- 1100 consensus_8837#1 CCTTCTCATTCTCAGCAATCTGGAAAATTGCGCATTTCTGCTTTTGTTCATAGCATATGA 931 **** * * *** * * ** *** * * * ** ** * * * consensus_8837#0 ATGATGCAGTGCTTTGTT---------------- 1118 consensus_8837#1 ATGTTGT-GTGCTTGCCTGACTAAATTATCAAAA 964 *** ** ****** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||