These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8839#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 549 fasta sequence [TCCCGGTGACCGGAGGGCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCGTGTACTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACTTCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGCTCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCTCTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCACCGCCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTTTCATTGTATTTTTATTGGATGTTGCATATATTATTGTCTTTTTGTTGCAATCAGTAGTTTTCAACTGTTGCATTCACCCACCGCCTGATCGAGTCGTCCCATTATTTGCTTTTTGTTGCATCTTGTCGTGGAATGATGTTTCATTGTGTTTTTAATCGATGTTGCACATATTGTTGTCTTTAAAAAAAA] [+] EMBL AK062737 [TCCCGGTGACCGGAGGGCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCGTGTACTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACTTCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGCTCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCTCTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCACCGCCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTTTCATTGTATTTTTATTGGATGTTGCATATATTATTGTCTTTTTGTTGCAATCAGTAGTTTTCAACTGTTGCATTCACCCACCGCCTGATCGAGTCGTCCCATTATTTGCTTTTTGTTGCATCTTGTCGTGGAATGATGTTTCATTGTGTTTTTAATCGATGTTGCACA ] [+] EMBL CB656916 [ GGGCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCGTGTACTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACTTCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGCTCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCTCTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCACCGCCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTTTCATTGTATTTTTATTGGATGTTGCATATATTATTGTCTTTTTGTTGCAATCAGTAGTTTTCAACTGTTGCATTCACCCACCGCCTGATCGAGTCGTCCCATTATTTGCTTTTTGTTGCATCTTGTCGTGGAATGATGTTTCATTGTGTTTTTAATCGATGTTGCACATAT ] [+] EMBL CB656919 [ GGGCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCGTGTACTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACTTCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGCTCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCTCTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCACCGCCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTTTCATTGTATTTTTATTGGATGTTGCATATATTATTGTCTTTTTGTTGCAATCAGTAGTTTTCAACTGTTGCATTCACCCACCGCCTGATCGAGTCGTCCCATTATTTGCTTTTTGTTGCATCTTGTCGTGGAATGATGTTTCATTGTGTTTTTAATCGATGTTGCACATAT ] [+] EMBL CF280415 [ TCGTCGCGGCCGCGTGGCTCGGGGGACGGCGTGTACTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACTTCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGCTCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCTCTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCACCGCCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTTTCATTGTATTTTTATTGGATGTTGCATATATTATTGTCTTTTTGTTGCAATCAGTAGTTTTCAACTGTTGCATTCACCCACCGCCTGATCGAGTCGTCCCATTATTTGCTTTTTGTTGCATCTTGTCGTGGAATGATGTTTCATTGTGTTTTTAATCGATGTTGCACATATTGTTGTCTTTAAAAAA ] [-] EMBL CF280416 [ GGACGCGCTGCTCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCTCTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCACCGCCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTTTCATTGTATTTTTATTGGATGTTGCATATATTATTGTCTTTTTGTAGCAATCAGTAGTTTTCAACTGTTGCATTCACCCACCGCCTGATCGAGTCGTCCCATTATTTGCTTTTTGTTGCATCTTGTCGTGGAATGATGTTTCATTGTGTTTTTAATCGATGTTGCACATATTGTTGTCTTTAAAAAAAA] consensusID : consensus_8839#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [GCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCGTGTGCTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACTTCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGCTCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCTCTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCACCGCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTTTCATTGTATTTTTATTGGATGTTGCATATATTATTGGCTTTTTGTTGCAATCAGTAGTTTTCAACTGTTGCATTCAANANAAAAAAANAAA] [+] EMBL CA756512 [GCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCGTGTGCTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACTTCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGCTCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCTCTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCACCGCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTTTCATTGTATTTTTATTGGATGTTGCATATATTATTGGCTTTTTGTTGCAATCAGTAGTTTTCAACTGTTGCATTCAANANAAAAAAANAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8839#0 TCCCGGTGACCGGAGGGCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCG 60 consensus_8839#1 ----------------GCACCGCAGGGGTTCGTCGCGGCCGCGTGGCTCGGGGGACGGCG 44 ******************************************** consensus_8839#0 TGTACTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACT 120 consensus_8839#1 TGTGCTCCGCCGCGGCGACCACGCTGCCCTACGAGGACGCGGATGGGCTCATCAAGTACT 104 *** ******************************************************** consensus_8839#0 TCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGC 180 consensus_8839#1 TCGCCGTCGACGACTCCCGCGGCCGCGTGTTCGTGTTCTCTGTCGCCGTGGACGCGCTGC 164 ************************************************************ consensus_8839#0 TCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCT 240 consensus_8839#1 TCGAGCTGGAGCCTAGGGTGTGCAACGAGCCGCCGATCACTGCCCTGCTTGTGTACCTCT 224 ************************************************************ consensus_8839#0 CTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCA 300 consensus_8839#1 CTCCGCGCCACACCTCTTCTTCCTCTTCACCGGCCATGCCGACGGCTCCATCGCTGCCCA 284 ************************************************************ consensus_8839#0 CCGCCTCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTT 360 consensus_8839#1 CCGC-TCGTCGAGTCGTCTCATTATTTGTTTTCGTTGCACCTTTGTCGTGAAATGATGTT 343 **** ******************************************************* consensus_8839#0 TCATTGTATTTTTATTGGATGTTGCATATATTATTGTCTTTTTGTTGCAATCAGTAGTTT 420 consensus_8839#1 TCATTGTATTTTTATTGGATGTTGCATATATTATTGGCTTTTTGTTGCAATCAGTAGTTT 403 ************************************ *********************** consensus_8839#0 TCAACTGTTGCATTCACCCACCGCCTGATCGAGTCGTCCCATTATTTGCTTTTTGTTGCA 480 consensus_8839#1 TCAACTGTTGCATTCAAN-ANAAAAAAANAAA---------------------------- 434 **************** * * * consensus_8839#0 TCTTGTCGTGGAATGATGTTTCATTGTGTTTTTAATCGATGTTGCACATATTGTTGTCTT 540 consensus_8839#1 ------------------------------------------------------------ consensus_8839#0 TAAAAAAAA 549 consensus_8839#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||