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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8845#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1083 fasta sequence
[CTTTCTTCCCCGCAGACCGCAACGACCGAAAACGCCGCTACGCTACCACGGG-CGCGCTCCCCTCCTCTTCGCCGTCGCCGCCTCCGCCGCCGCGGGCTCGCATCGCCGCCCGTCCCCAGTAGCACGGTTTTTGTTCTGCTCTTCACTGGTGTGGTTGCTACTCTTTGCTCAACAATATGGTTTCCTTCGAGATGAATGACCTCAAGAAGATTGGGCTAGGCTTGACAGGCTTTGGAGTATTCTTCTCATTCCTGGGAATCATTTTCTTCTTTGACAAGGGGCTTATTGCAATGGGCAATATTCTCTTCCTGTCAGGTTTGGGTTTGACAATTGGTCTGAAATCAACCATGCAATTCTTCACCAAGCCTAAGAATTACAAGGGTACCATCTCATTTGGTGCTGGCTTTTTCCTGGTTCTCATTGGGTGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTTTGTTGTACTCTTCAGTGGATTCTGGCCAACTCTTGTGGTTTTCTTGCAAAGGATTCCTATTATTGGTTGGATATTTCAACAACCATTTGTCACATCGTTCCTTGACCGCTACAGAGGAAAACGGGTTCCAGTGTAGCACAGCTATGTTTCTTATGATGTAGCAACTGAAGGTTTTGGGGGGTTACAACAGCAAGTGGTTCTCCCAATGTGTAATCCTTTTTCTCTAAATGTTTACTTGCTGGTAGGTTTGTTCTTTTGTAAATTACAACCCTGGACCTCCACTGAATCGTTTGGCCAAAGACATGCAAATTCTACAATGAAATGGATTGGATCATTGGAGAAACTTCTGAAGCAAGCCCCGCATGTTGGGACAAGGTAGCAGTAGAGGATCGCTATTGAAAACTAAAATAGATTTTACATACCCTTTATCGTTTTGTAACAGTGCCTGGCAGTCGCAGATATAGATATTCCAGCCTTGTCGGCTTATGCTTGAGCGTATTGTCGCAACTTATGCGCACTTGATAGCTTGGAAGAAGTAAATTTGATGCAATTAT-CCCAACTTATGTTCATTTGATAGCTTGAAGAAAGTAAATTTGCTGCAATTGAAATTAAAAAAAAAA]
[+] EMBL AK059829 [CTTTCTTCCCCGCAGACCGCAACGACCGAAAACGCCGCTACGCTACCACGGG CGCGCTCCCCTCCTCTTCGCCGTCGCCGCCTCCGCCGCCGCGGGCTCGCATCGCCGCCCGTCCCCAGTAGCACGGTTTTTGTTCTGCTCTTCACTGGTGTGGTTGCTACTCTTTGCTCAACAATATGGTTTCCTTCGAGATGAATGACCTCAAGAAGATTGGGCTAGGCTTGACAGGCTTTGGAGTATTCTTCTCATTCCTGGGAATCATTTTCTTCTTTGACAAGGGGCTTATTGCAATGGGCAATATTCTCTTCCTGTCAGGTTTGGGTTTGACAATTGGTCTGAAATCAACCATGCAATTCTTCACCAAGCCTAAGAATTACAAGGGTACCATCTCATTTGGTGCTGGCTTTTTCCTGGTTCTCATTGGGTGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTTTGTTGTACTCTTCAGTGGATTCTGGCCAACTCTTGTGGTTTTCTTGCAAAGGATTCCTATTATTGGTTGGATATTTCAACAACCATTTGTCACATCGTTCCTTGACCGCTACAGAGGAAAACGGGTTCCAGTGTAGCACAGCTATGTTTCTTATGATGTAGCAACTGAAGGTTTTGGGGGGTTACAACAGCAAGTGGTTCTCCCAATGTGTAATCCTTTTTCTCTAAATGTTTACTTGCTGGTAGGTTTGTTCTTTTGTAAATTACAACCCTGGACCTCCACTGAATCGTTTGGCCAAAGACATGCAAATTCTACAATGAAATGGATTGGATCATTGGAGAAACTTCTGAAGCAAGCCCCGCATGTTGGGACAAGGTAGCAGTAGAGGATCGCTATTGAAAACTAAAATAGATTTTACATACCCTTTATCGTTTTGTAACAGTGCCTGGCAGTCGCAGATATAGATATTCCAGCCTTGTCGGCTTATGCTTGAGCGTATTGTCGCAACTTATGCGCACTTGATAGCTTGGAAGAAGTAAATTTGATGCAATTAT CCCAACTTATGTTCATTTGATAGCTTGAAGAAAGTAAATTTGCTGCAATTGAAATT ]
[+] EMBL CA758955 [ CCGATACGCTACCACGGGCCGCGCTCCCCTGCTCTTCGCCGTCGCCGCCTCCGCCGCCGCGGGCTCGCATCGCCGCCCGTCCCCAGTAGCACGGGTTTTGTTCTGCTCTTCACTGGTGGGGCTGCTACTCTTTGCTCAACAATATGGTTTCCTTCGAGATGAATGACCTCAAGAAGATGGGGCTAGGCTTGACAGGCTTTGGAGTATTCTTCTCATTCCTGGGAATCATTGTCTTCTTTGACAAGGGGCTTATTGCAATGGGCAATATTCTCTTCCTGACAGGATTGGGTTTGACAATTGGTCTGAAATCAACCATGCAATTCTTCACCAAGCCTAAGAATTACAAGGGGACCATCTCATTTGGTGCTGGCTTTTTCCTGGATCTCATTGGGGGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTTTGTTGTACTCTTCAGTGGATTCTGGCCAACTCTTGTGGTTTTCTTGCAGAGGATTCCTATTATTGGTTGGATATTTCAACAACCATTTGTCACATCGTTCCTTGACCGCTACAGAGGAAAACGGGTTCCAGTGTAGCACAGCTATGCTTCTTATGATGTAGCAACTGAAGGTTCTGGTGGGTTACAACAGCAAGTGGGTCTCCCAGTGTGTAATC ]
[-] EMBL CA762273 [ GGCTTTNTCCTGGTTCTCATTGGGTGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTTTGTTGTACTCTTCAGTGGATTCTGGCCAACTCTTGTGGTTTTCTTGCAAAGGATTCCTATTATTGGTTGGATATTTCAACAACCATTTGTCACATCGTTCCTTGACCGCTACAGAGGAAAACGGGTTCCAGTGTAGCACAGCTATGTTTTTTTTGATGTAGCAACTGAAGGTTTTGGGGGGTTACAACAGCAAGTGGTTCTCCCAATGTGTAATCCTTTTTCTCTAAATGTTTA CTGGTAGGTTTGTTCTTTTGTAAATTACAACCCTGGACCTCCCCTGAATTGTTTGGCCAAAGACATGCAAATTTTTCAATGAAATGGATTGGATCCTTGGAGAAACTTTTGAAGCCAGCCCCGCATGTTGGGACAAGGTAGCAGTAGAGGATCGCTATTGAAAACTAAAATAGATTTTACATACCCTTTATCGTTTTGTAACAGTGCCTGTCAGTCGCAGATATAGATATTCCAGCCTTGTCGGCTTATGCTTGAGCGTATTGTCGCAACTTTTGCGCCCCTGATAGCTTGGAAGAAGTAAATTTGATGCAATTATCCCCAACTTATGTTCCTTTGATAGCTTGAAGAAAGTAAATTTGCTGCCATTGAAAAAAAAAAAAAAA]
consensusID : consensus_8845#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 830 fasta sequence
[TGGACTGAAGGAGTAGAAAAGACCGCAACGACCGAAAACGCCGCTACGCTACCACGGGCGCGCTCCCCTCCTCTTCGCCGTCGCCGCCTCCGCCGCCGCGGGCTCGCATCGCCGCCCGTCCCCAGTAGCACGGTTTTTGTTCTGCTCTTCACTGGTGTGGTTGCTACTCTTTGCTCAACAATATGGTTTCCTTCGAGATGAATGACCTCAAGAAGATTGGGCTAGGCTTGACAGGCTTTGGAGTATTCTTCTCATTCCTGGGAATCATTTTCTTCTTTGACAAGGGGCTTATTGCAATGGGCAATATTCTCTTCCTGTCAGGTTTGGGTTTGACAATTGGTCTGAAATCAACCATGCAATTCTTCACCAAGCCTAAGAATTACAAGGGTACCATCTCATTTGGTGCTGGCTTTTTCCTGGTTCTCATTGGGTGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTNTGTTGTACTCTTCAGTGGATTCTGGCCAACTCTTGTGGTTTTCTTGCAAAGGATTCCTATTATTGGTTGGATATTTCAACAACCATTTGTCACATCGTTCCTTGACCGCTACAGAGGAAAACGGGTTCCAGTGTAGCACAGCTATGTTTCTTATGATGTAGCAACTGAAGGTTTTGGGGGGTTACAACAGCAAGTGGTTCTCCCAATGTGTAATCCTTTTTCTCTAAATGTTTACTTGCTGGTNNNNTTGTTCTTTTGTAAATTACAACCCTGGACCTCCACTGAATCGTTTGGCCAANNNCATGCAAATTCTACNNTGAAATGGATTGGATCATTNNNNNNNCTTCTGANNNNNNCCNNN]
[+] EMBL CF290934 [TGGACTGAAGGAGTAGAAAAGACCGCAACGACCGAAAACGCCGCTACGCTACCACGGGCGCGCTCCCCTCCTCTTCGCCGTCGCCGCCTCCGCCGCCGCGGGCTCGCATCGCCGCCCGTCCCCAGTAGCACGGTTTTTGTTCTGCTCTTCACTGGTGTGGTTGCTACTCTTTGCTCAACAATATGGTTTCCTTCGAGATGAATGACCTCAAGAAGATTGGGCTAGGCTTGACAGGCTTTGGAGTATTCTTCTCATTCCTGGGAATCATTTTCTTCTTTGACAAGGGGCTTATTGCAATGGGCAATATTCTCTTCCTGTCAGGTTTGGGTTTGACAATTGGTCTGAAATCAACCATGCAATTCTTCACCAAGCCTAAGAATTACAAGGGTACCATCTCATTTGGTGCTGGCTTTTTCCTGGTTCTCATTGGGTGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTNTGTTGTACTCTTCAGTGGATTCTGGCCAACTCTTGTGGTTTTCTTGCAAAGGATTCCTATTATTGGTTGGATATTTCAACAACCATTTGTCACAT ]
[+] EMBL CF196582 [ TTCCTGGGAATCATTTTCTTCTTTGACAAGGGGCTTATTGCAATGGGCAATATTCTCTTCCTGTCAGGTTTGGGTTTGACAATTGGTCTGAAATCAACCATGCAATTCTTCACCAAGCCTAAGAATTACAAGGGTACCATCTCATTTGGTGCTGGCTTTTTCCTGGTTCTCATTGGGTGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTTTGTTGTACTCTTCAGTGGATTCTGGCCAACTCTTGTGGTTTTCTTGCAAAGGATTCCTATTATTGGTTGGATATTTCAACAACCATTTGTCACATCGTTCCTTGACCGCTACAGAGGAAAACGGGTTCCAGTGTAGCACAGCTATGTTTCTTATGATGTAGCAACTGAAGGTTTTGGGGGGTTACAACAGCAAGTGGTTCTCCCAATGTGTAATCCTTTTTCTCTAAATGTTTACTTGCTGGTNNNNTTGTTCTTTTGTAAATTACAACCCTGGACCTCCACTGAATCGTTTGGCCAANNNCATGCAAATTCTACNNTGAAATGGATTGGATCATTNNNNNNNCTTCTGANNNNNNCCNNN]
consensusID : consensus_8845#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence
[CGTGTAATCCTTTTTCTTTAAATGTTGACAGGCTGGTAGGTTTGTTCTTTTGTACATTGCACCCCTGGACCTCCGTTGAATCGTTTGGCCAAAGACATGCCAATTCTACAATGAAATGCATTGGATCATTGTAGAAACTTATCAAGCAAGCCCCGCATGTTGGGACAAGGTAGCAGTAGAGGATCGCTATTGAAAACTAAAATAGATTCTACATACCCTTTATCGTTTTGTAACAGTGCCTGGCAGTTGCAGATATAGATATTCCAGCCTTGTCGGTTTATGCTTGAGCGTATTGTCGCAACTTATGCGCACTTGATAGCTTGGAATAAGTAAATTTGATGCCATTATCCCAACTTATGTTCATTTGATAGCTGTAAGAAAGTAAATTTGCTGCAATTGTGATTGATTGTTCGTAAAAAA]
[-] EMBL CF290933 [CGTGTAATCCTTTTTCTTTAAATGTTGACAGGCTGGTAGGTTTGTTCTTTTGTACATTGCACCCCTGGACCTCCGTTGAATCGTTTGGCCAAAGACATGCCAATTCTACAATGAAATGCATTGGATCATTGTAGAAACTTATCAAGCAAGCCCCGCATGTTGGGACAAGGTAGCAGTAGAGGATCGCTATTGAAAACTAAAATAGATTCTACATACCCTTTATCGTTTTGTAACAGTGCCTGGCAGTTGCAGATATAGATATTCCAGCCTTGTCGGTTTATGCTTGAGCGTATTGTCGCAACTTATGCGCACTTGATAGCTTGGAATAAGTAAATTTGATGCCATTATCCCAACTTATGTTCATTTGATAGCTGTAAGAAAGTAAATTTGCTGCAATTGTGATTGATTGTTCGTAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8845#0 ----CTTTCTTCCCCGCA--GACCGCAACGACCGAAAACGCCGCTACGCTACCACGGGCG 54
consensus_8845#1 TGGACTGAAGGAGTAGAAAAGACCGCAACGACCGAAAACGCCGCTACGCTACCACGGGCG 60
consensus_8845#2 ------------------------------------------------------------
consensus_8845#0 CGCTCCCCTCCTCTTCGCCGTCGCCGCCTCCGCCGCCGCGGGCTCGCATCGCCGCCCGTC 114
consensus_8845#1 CGCTCCCCTCCTCTTCGCCGTCGCCGCCTCCGCCGCCGCGGGCTCGCATCGCCGCCCGTC 120
consensus_8845#2 ------------------------------------------------------------
consensus_8845#0 CCCAGTAGCACGGTTTTTGTTCTGCTCTTCACTGGTGTGGTTGCTACTCTTTGCTCAACA 174
consensus_8845#1 CCCAGTAGCACGGTTTTTGTTCTGCTCTTCACTGGTGTGGTTGCTACTCTTTGCTCAACA 180
consensus_8845#2 ------------------------------------------------------------
consensus_8845#0 ATATGGTTTCCTTCGAGATGAATGACCTCAAGAAGATTGGGCTAGGCTTGACAGGCTTTG 234
consensus_8845#1 ATATGGTTTCCTTCGAGATGAATGACCTCAAGAAGATTGGGCTAGGCTTGACAGGCTTTG 240
consensus_8845#2 ------------------------------------------------------------
consensus_8845#0 GAGTATTCTTCTCATTCCTGGGAATCATTTTCTTCTTTGACAAGGGGCTTATTGCAATGG 294
consensus_8845#1 GAGTATTCTTCTCATTCCTGGGAATCATTTTCTTCTTTGACAAGGGGCTTATTGCAATGG 300
consensus_8845#2 ------------------------------------------------------------
consensus_8845#0 GCAATATTCTCTTCCTGTCAGGTTTGGGTTTGACAATTGGTCTGAAATCAACCATGCAAT 354
consensus_8845#1 GCAATATTCTCTTCCTGTCAGGTTTGGGTTTGACAATTGGTCTGAAATCAACCATGCAAT 360
consensus_8845#2 ------------------------------------------------------------
consensus_8845#0 TCTTCACCAAGCCTAAGAATTACAAGGGTACCATCTCATTTGGTGCTGGCTTTTTCCTGG 414
consensus_8845#1 TCTTCACCAAGCCTAAGAATTACAAGGGTACCATCTCATTTGGTGCTGGCTTTTTCCTGG 420
consensus_8845#2 ------------------------------------------------------------
consensus_8845#0 TTCTCATTGGGTGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTTTGTTGTACTCT 474
consensus_8845#1 TTCTCATTGGGTGGCCCTTCTTCGGCATGCTTTTAGAGGCATATGGCTNTGTTGTACTCT 480
consensus_8845#2 -------CGTGTAATCCTTTTTCTTTAAATGTTGACAGGCTGGTAGGTTTGTTCTTTTGT 53
* ** **** *** * ** * **** * * * **** * * *
consensus_8845#0 TCAGTGGATTC-TGGCCAACTCTTGTGGTTTTCTTGCAAAGGATTCCTATTATTGGTTGG 533
consensus_8845#1 TCAGTGGATTC-TGGCCAACTCTTGTGGTTTTCTTGCAAAGGATTCCTATTATTGGTTGG 539
consensus_8845#2 ACATTGCACCCCTGGACCTCCGTTGAATCGTTTGGCCAAAGACATGCCAATTCTACAATG 113
** ** * * *** * * *** ** ***** * * * * * *
consensus_8845#0 ATATTTCAACAACCATT-TGTCACATCGTTCCTTGACCGCTACAGAGGAAAACG-GGTTC 591
consensus_8845#1 ATATTTCAACAACCATT-TGTCACATCGTTCCTTGACCGCTACAGAGGAAAACG-GGTTC 597
consensus_8845#2 AAATGCATTGGATCATTGTAGAAACTTATCAAGCAAGCCCCGCATGTTGGGACAAGGTAG 173
* ** * **** * * * * * * * ** ** ***
consensus_8845#0 CAGTGTAGCACAGCTAT-GTTTCTTATGATGTAGCAACTGAAGGTTTTGGGGGGTTACAA 650
consensus_8845#1 CAGTGTAGCACAGCTAT-GTTTCTTATGATGTAGCAACTGAAGGTTTTGGGGGGTTACAA 656
consensus_8845#2 CAGTAGAGGATCGCTATTGAAAACTAAAATAGATTCTACATACCCTTTATCGTTTTGTAA 233
**** ** * ***** * ** ** * * *** * ** **
consensus_8845#0 CAGCAAGTGGTTCTCCCA-ATGTGTA-ATCCTTTTTCTCTAAATGTTTACTTGCTGGTAG 708
consensus_8845#1 CAGCAAGTGGTTCTCCCA-ATGTGTA-ATCCTTTTTCTCTAAATGTTTACTTGCTGGTNN 714
consensus_8845#2 CAGTGCCTGGCAGTTGCAGATATAGATATTCCAGCCTTGTCGGTTTATGCTTGAGCGTAT 293
*** *** * ** ** * * ** * * * * * * **** **
consensus_8845#0 GTTTGTT-CTTTTGTAAATT--ACAACCCTGGACCTCCA---CTGAATCGTTTGGCCAAA 762
consensus_8845#1 NNTTGTT-CTTTTGTAAATT--ACAACCCTGGACCTCCA---CTGAATCGTTTGGCCAAN 768
consensus_8845#2 TGTCGCAACTTATGCGCACTTGATAGCTTGGAATAAGTAAATTTGATGCCATTATCCCAA 353
* * *** ** * * * * * * * * *** * ** ** *
consensus_8845#0 GACATGCAAATTCTACAA-TGAAATGGATTGGATC-ATTGGAGAAACTTCTGAAGCAAGC 820
consensus_8845#1 NNCATGCAAATTCTACNN-TGAAATGGATTGGATC-ATTNNNNNNNCTTCTGANNNNNNC 826
consensus_8845#2 CTTATGTTCATTTGATAGCTGTAAGAAAGTAAATTTGCTGCAATTGTGATTGATTGTTCG 413
*** *** * ** ** * * ** * ***
consensus_8845#0 CCCGCATGTTGGGACAAGGTAGCAGTAGAGGATCGCTATTGAAAACTAAAATAGATTTTA 880
consensus_8845#1 CNNN-------------------------------------------------------- 830
consensus_8845#2 TAAAAAA----------------------------------------------------- 420
consensus_8845#0 CATACCCTTTATCGTTTTGTAACAGTGCCTGGCAGTCGCAGATATAGATATTCCAGCCTT 940
consensus_8845#1 ------------------------------------------------------------
consensus_8845#2 ------------------------------------------------------------
consensus_8845#0 GTCGGCTTATGCTTGAGCGTATTGTCGCAACTTATGCGCACTTGATAGCTTGGAAGAAGT 1000
consensus_8845#1 ------------------------------------------------------------
consensus_8845#2 ------------------------------------------------------------
consensus_8845#0 AAATTTGATGCAATTATCCCAACTTATGTTCATTTGATAGCTTGAAGAAAGTAAATTTGC 1060
consensus_8845#1 ------------------------------------------------------------
consensus_8845#2 ------------------------------------------------------------
consensus_8845#0 TGCAATTGAAATTAAAAAAAAAA 1083
consensus_8845#1 -----------------------
consensus_8845#2 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||