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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8852#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 768 fasta sequence
[TTGAATTCAAAATTTTGGATTCGAACTTTTAGACTATTTAAGTGGAGAAAGTTATTACAGACTTGTGGTAGTAAAGTTGAGCCAAAAGAAAAAAAAAACTTAAGTGCTCCATGAACCA-GTTTCTCAACTGAAAATTTTCATGTGGAACAGGACCATCGAGATACAAAACTATCTGAAAGTGTTGAATTTCTCTCTCTAGCGAACAAATCAAACTACTCTGCTGCTCTATCATGCTATGCGTATCATTGGAAACTAATCTAAAGAGATGTTTATCTCAAAGCTGGACTCTGAGCTGATGGTCTCCTTGTTGGTGGTCCCAGCAGGATGATCGGCACACTCCAGCATCAGCCTCAGGTGCACCGGCTTCATGATTGTCAGGGCCCTCGAATCCTTGCAGCTCTCCATCAGTAGCTCAACGCCTGCGTGATCCTCGCGACGCTGGCACTGGATGATCCTCTTCACCAGTGATTTCTGTTCTCCGTGGTCATCTTTCGCGCTATCGATCTTCAGGTACAACGCAGCAGAGGCCACCAGCTCGCATGTCCCAAGACTGACATTAACAACACAGTTGAAATGCGCTCTTCTCTGTTCTTGATAACTTCCATCTGAAAGGTTCTCATCACCTTCATGCACTGTAGGTTCCTCAGGAACTTCAGAAAAAGCTAGGGTGTCTATCTCATCATACCATTGCTGTGCTATACCAACCTTTTCTGTGCTTGTGGATGGTTCATCAAAACCAGATACCTCAGCACCAGATCCCCTTACTTG]
[+] EMBL CB653546 [TTGAATTCAAAATTTTGGATTCGAACTTTTAGACTATTTAAGTGGAGAAAGTTATTACAGACTTGTGGTAGTAAAGTTGAGCCAAAAGAAAAAAAAAACTTAAGTGCTCCATGAACCANGTTTCTCAACTGAAAATTTTCATGTGGAACAGGACCATCGAGATACAAAACTATCTGAAAGTGTTGAATTTCTCTCTCTAGCGAACAAATCAAACTACTCTGCTGCTCTATCATGCTATGCGTATCATTGGAAACTAATCTAAAGAGATGTTTATCTCAAAGCTGGACTCTGAGCTGATGGTCTCCTTGTTGGTGGTCCCAGCAGGATGATCGGCACACTCCAGCATCAGCCTCAGGTGCACCGGCTTCATGATTGTCAGGGCCCTCGAATCCTTGCAGCTCTCCATCAGTAGCTCAACGCCTGCGTGATCCTCGCGACGCTGGCACTGGATGATCCTCTTCACCAGTGATTTCTGTTCTCCGTGGTCATCTTTCGCGCTATCGATCTTCAGGTACAACGCAGCAGAGGCCACCAGCTCGCATGTCCCAAGACTGACATTAACAACACAGTTGAAATGCGCTCTTCTCTGTTCTTGATAACTTCCATCTGAAAGGTTCTCATCACCTTCATGCACTGTAGGTTCCTCAGGAACTTCAGAAAAAGCTAGGGTGTCTATCTCATCATACCATTGCTGTGCTATACCAACCTTTTCTGTGCTTGTGGATGGTTCATCAAAACCAGATACCTCAGCACCAGATCCCCTTACTTG]
[-] EMBL CF300760 [ TTTAGACTATTTAAGTGGAGAAAGTTATTACAGACTTGTGGTAGTAAAGTTGAGCCAAAAGAAAAAAAAAACTTAAGTGCTCCATGAACCA GTTTCTCAACTGAAAATTTTCATGTGGAACAGGACCATCGAGATACAAAACTATCTGAAAGTGTTGAATTTCTCTCTCTAGCGAA ]
[-] EMBL AK059320 [ TGAACCA GTTTCTCAACTGAAAATTTTCATGTGGAACAGGACCATCGAGATACAAAACTATCTGAAAGTGTTGAATTTCTCTCTCTAGCGAACAAATCAAACTACTCTGCTGCTCTATCATGCTATGCGTATCATTGGAAACTAATCTAAAGAGATGTTTATCTCAAAGCTGGACTCTGAGCTGATGGTCTCCTTGTTGGTGGTCCCAGCAGGATGATCGGCACACTCCAGCATCAGCCTCAGGTGCACCGGCTTCATGATTGTCAGGTCCCTCGAATCCTTGCAGCTCTCCATCAGTAGCTCAACGCCTGCGTGATCCTCGCGACGCTGGCACTGGATGATCCTCTTCACCAGTGATTTCTGTTCTCCGTGGTCATCTTTCGCGCTATCGATCTTCAGGTACAACGCAGCAGAGGCCACCAGCTCGCATGTCCCAGGACTGACATTAACAACACAGTTGAAATGCGCTCTTCTCTGTTCTTGATAACTTCCATCTGAAAGGTTCTCATCACCTTCATGCACTGTAGGTTCCTCAGGAACTTCAGAAAAAGCTA ]
consensusID : consensus_8852#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence
[TCGATTTTTGTTGAATTCAAAATTTTGGATTCGAACTTTTAGACTATATAAGTGGAGAAAGTTATTACAGACTTGTGGTAGTAAAGTTGAGCCAAAAAACAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACTGAAGTGCTCCATGAGCCAGTTTCTCAACTGAAAATTTTCATGTGGAACAGGACCATCGAGATACAAAACTATCTGAAAGTGTTGAATTTTTCTCTCTAGCGAACAAATCAAACTACTCTGCTGCTCTATCATGCTATGCGTATCATGGAAAGTTGGAAACTAATCTAAAGAGATGTTTATCTCAAAGCTGGACTCTGAGCTGATGGTTTCCTTGTTGGTTGTTCCAGCAGGATGATCGGCACATTCCAGCATCAGCCTCAGATGCACTGGCTTCATGATTGTCAGGTCCCTCGCATCCTTGCAGCTCTCCATCAGTAGCTCAACGCCTGCGTGATCCTCGCGACGCTGGCACTGGATGATCCTCTTCACCAGTGCTTGCTGTTCTCCGTGGTCATCTTTCGCGCTATCGATCTTCAGGTACAACGCAGCAGAGGCCACCAGCTCGCATGTCCCAGGACTGACATTAACAACACAGCTGAAATGCACTCTTCTCTGTTCTTGATAACTTCCATCTGAAAGATTCTCATCACCTTCATGCACTGTAGGTTCCTCAGGAACTTCAGAAAAAGCTAGGTTGTCTATCTCATCATACCATTGCTGTGCTATACC]
[+] EMBL CB630150 [TCGATTTTTGTTGAATTCAAAATTTTGGATTCGAACTTTTAGACTATATAAGTGGAGAAAGTTATTACAGACTTGTGGTAGTAAAGTTGAGCCAAAAAACAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACTGAAGTGCTCCATGAGCCAGTTTCTCAACTGAAAATTTTCATGTGGAACAGGACCATCGAGATACAAAACTATCTGAAAGTGTTGAATTTTTCTCTCTAGCGAACAAATCAAACTACTCTGCTGCTCTATCATGCTATGCGTATCATGGAAAGTTGGAAACTAATCTAAAGAGATGTTTATCTCAAAGCTGGACTCTGAGCTGATGGTTTCCTTGTTGGTTGTTCCAGCAGGATGATCGGCACATTCCAGCATCAGCCTCAGATGCACTGGCTTCATGATTGTCAGGTCCCTCGCATCCTTGCAGCTCTCCATCAGTAGCTCAACGCCTGCGTGATCCTCGCGACGCTGGCACTGGATGATCCTCTTCACCAGTGCTTGCTGTTCTCCGTGGTCATCTTTCGCGCTATCGATCTTCAGGTACAACGCAGCAGAGGCCACCAGCTCGCATGTCCCAGGACTGACATTAACAACACAGCTGAAATGCACTCTTCTCTGTTCTTGATAACTTCCATCTGAAAGATTCTCATCACCTTCATGCACTGTAGGTTCCTCAGGAACTTCAGAAAAAGCTAGGTTGTCTATCTCATCATACCATTGCTGTGCTATACC]
consensusID : consensus_8852#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGAATTCAAAATTTTGGATTCGAACTTTTAAACTATATAAGGGGAGAAAGTTATTACAGACTTGGGGTAGTAAAGTTGAGCCAAAAAACAAGAGAGAGAGAGAGAGAGAGAGAGAACTGAAGTGCTCCATGAGCCAGTTTCTCAACTGAAAATTTTCATGGGGAACAGGACCATCGAGATACAAAACTATCTGAAAGGGTTGAATTTTTCTCTCTAGCGAACAAATCAAACTACTCTGCTGCTCTATCAGGCTATGCGAATCAGGGAAAGGTGGAAACTAATCTAAAGAGATGTTTATCTCAAAGCTGGACTCTGAGCTGACGGGTTCCTTGGTGGTTGTTCCAGCAGGAGGATCGGGACATTTCAGGATCGGCCTCAAATGCCCTGGGTTCATGAGTGGCAGGACCCTCGCATCCTTGGAGGTGTCCATAAGAAGGCTAACGCCGGCGGGATCCTCGGGACGCTGGCACTGGAGGAGCCCCTCCACCAGGGGTTGCGGGTCTCCGGGGGCCGTTTTCGGGCTATGGGTGGTCAGGGTCAAGGGCACCAGGAGCCACGCGCCTCGTATGGCGCTAGAGCTGCTTGTACACGGCGAAGTTGAATGCAGCCTTCGCTTTGCTCCGAAACCCCCCTGGTCGCGGCCGAAACAGGTTGATGG]
[+] EMBL CA759500 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGAATTCAAAATTTTGGATTCGAACTTTTAAACTATATAAGGGGAGAAAGTTATTACAGACTTGGGGTAGTAAAGTTGAGCCAAAAAACAAGAGAGAGAGAGAGAGAGAGAGAGAACTGAAGTGCTCCATGAGCCAGTTTCTCAACTGAAAATTTTCATGGGGAACAGGACCATCGAGATACAAAACTATCTGAAAGGGTTGAATTTTTCTCTCTAGCGAACAAATCAAACTACTCTGCTGCTCTATCAGGCTATGCGAATCAGGGAAAGGTGGAAACTAATCTAAAGAGATGTTTATCTCAAAGCTGGACTCTGAGCTGACGGGTTCCTTGGTGGTTGTTCCAGCAGGAGGATCGGGACATTTCAGGATCGGCCTCAAATGCCCTGGGTTCATGAGTGGCAGGACCCTCGCATCCTTGGAGGTGTCCATAAGAAGGCTAACGCCGGCGGGATCCTCGGGACGCTGGCACTGGAGGAGCCCCTCCACCAGGGGTTGCGGGTCTCCGGGGGCCGTTTTCGGGCTATGGGTGGTCAGGGTCAAGGGCACCAGGAGCCACGCGCCTCGTATGGCGCTAGAGCTGCTTGTACACGGCGAAGTTGAATGCAGCCTTCGCTTTGCTCCGAAACCCCCCTGGTCGCGGCCGAAACAGGTTGATGG]
consensusID : consensus_8852#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[CCGCTCTCCGCTCGCCGCCGCTGCGTCGCCTCGCCCTGCGGCTTCGTGCGATCCATTCTACGCTGCTGCGCCGAGCGGGGACGGAGGCGAGGCGAGGCGGGCGGGTGCTCTGATGGTGCAGGCTTCGGCCGTGGCGCTGCGCCGCCTCGGGCGCCGGGGCCGTCGAGATACAAAACTATCTGAAAGTGTTGAATTTTTCTCTCTAGCGAACAAATCAAACTACTCTGCTGCTCTATCATGCTATGCGTATCATGGAAAGTTGGAAACTAATCTAAAGAGATGTTTATCTCAAAGCTGGACTCTGAGCTGATGGTTTCCTTGTTGGGGGGTCCAGCAGGATGATCGGCACATTCCAGCATCAGCCTCAAATGCACTGGCTTCATGATTGTCAGGTCCCTCGCATCCTTGCAGCTCTCCATCAGTAGCTCAACGCCTGCGTGATCCTCGCGACGCTGGCACTGGATGATCCTCTTCACCAGTGCTTGCTGTTCTCCGTGGTCATCTTTCGCGCTATCGATCTTCAGGTACAACGCAGCAGAGGCCACCAGCTCGCATGTCCCAGGACTGACATTAACAACACAGCTGAAATGCACTCTTCTCTGTTCTTGATAACTTCCATCTGAAAGATTCTCAT]
[+] EMBL CB630149 [CCGCTCTCCGCTCGCCGCCGCTGCGTCGCCTCGCCCTGCGGCTTCGTGCGATCCATTCTACGCTGCTGCGCCGAGCGGGGACGGAGGCGAGGCGAGGCGGGCGGGTGCTCTGATGGTGCAGGCTTCGGCCGTGGCGCTGCGCCGCCTCGGGCGCCGGGGCCGTCGAGATACAAAACTATCTGAAAGTGTTGAATTTTTCTCTCTAGCGAACAAATCAAACTACTCTGCTGCTCTATCATGCTATGCGTATCATGGAAAGTTGGAAACTAATCTAAAGAGATGTTTATCTCAAAGCTGGACTCTGAGCTGATGGTTTCCTTGTTGGGGGGTCCAGCAGGATGATCGGCACATTCCAGCATCAGCCTCAAATGCACTGGCTTCATGATTGTCAGGTCCCTCGCATCCTTGCAGCTCTCCATCAGTAGCTCAACGCCTGCGTGATCCTCGCGACGCTGGCACTGGATGATCCTCTTCACCAGTGCTTGCTGTTCTCCGTGGTCATCTTTCGCGCTATCGATCTTCAGGTACAACGCAGCAGAGGCCACCAGCTCGCATGTCCCAGGACTGACATTAACAACACAGCTGAAATGCACTCTTCTCTGTTCTTGATAACTTCCATCTGAAAGATTCTCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8852#0 ------------------------------------TTGAATTCAAAATTTTGGATTCGA 24
consensus_8852#1 --------------------------TCGATTTTTGTTGAATTCAAAATTTTGGATTCGA 34
consensus_8852#2 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGAATTCAAAATTTTGGATTCGA 60
consensus_8852#3 ---------------------CCGCTCTCCGCTCGCCGCCGCTGCGTCGCCTCGCCCTGC 39
* * * *
consensus_8852#0 ACTTTTAGACTATTTAAGTGGAGAAAGTTATTACAGACTTGTGGTAGTAAAGTTGAGCCA 84
consensus_8852#1 ACTTTTAGACTATATAAGTGGAGAAAGTTATTACAGACTTGTGGTAGTAAAGTTGAGCCA 94
consensus_8852#2 ACTTTTAAACTATATAAGGGGAGAAAGTTATTACAGACTTGGGGTAGTAAAGTTGAGCCA 120
consensus_8852#3 GGCTTCGTGCGATCCATTCT----ACGCTGCTGC-GCCGAGCGGGGACGGAGGCGAGGCG 94
** * ** * * * * * * * * * ** ** *** *
consensus_8852#0 AAA-----------------------GAAAAAAAAAACTTAAGTGCTCCATGAACCAGTT 121
consensus_8852#1 AAAAACAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACTGAAGTGCTCCATGAGCCAGTT 154
consensus_8852#2 AAAAACAAGAGAGAGAGAGAG----AGAGAGAGAGAACTGAAGTGCTCCATGAGCCAGTT 176
consensus_8852#3 AG------------------------GCGGGCGGGTGCTCTGATGGTGCAGGCTTCGGCC 130
* * ** ** * ** * * *
consensus_8852#0 TCTCAACTGAAAATTTTCATGTGGAACAGGACCATCGAGATACAAAACTATCTGAAAGTG 181
consensus_8852#1 TCTCAACTGAAAATTTTCATGTGGAACAGGACCATCGAGATACAAAACTATCTGAAAGTG 214
consensus_8852#2 TCTCAACTGAAAATTTTCATGGGGAACAGGACCATCGAGATACAAAACTATCTGAAAGGG 236
consensus_8852#3 GTGGCGCTGCG--CCGCCTCGGGCGCCGGGGCCGTCGAGATACAAAACTATCTGAAAGTG 188
*** * * * * ** ** ************************ *
consensus_8852#0 TTGAATTTCTCTCTCTAGCGAACAAATCAAACTACTCTGCTGCTCTATCATGCTATGCGT 241
consensus_8852#1 TTGAATTTTTCTCTCTAGCGAACAAATCAAACTACTCTGCTGCTCTATCATGCTATGCGT 274
consensus_8852#2 TTGAATTTTTCTCTCTAGCGAACAAATCAAACTACTCTGCTGCTCTATCAGGCTATGCGA 296
consensus_8852#3 TTGAATTTTTCTCTCTAGCGAACAAATCAAACTACTCTGCTGCTCTATCATGCTATGCGT 248
******** ***************************************** ********
consensus_8852#0 ATCAT-------TGGAAACTAATCTAAAGAGATGTTTATCTCAAAGCTGGACTCTGAGCT 294
consensus_8852#1 ATCATGGAAAGTTGGAAACTAATCTAAAGAGATGTTTATCTCAAAGCTGGACTCTGAGCT 334
consensus_8852#2 ATCAGGGAAAGGTGGAAACTAATCTAAAGAGATGTTTATCTCAAAGCTGGACTCTGAGCT 356
consensus_8852#3 ATCATGGAAAGTTGGAAACTAATCTAAAGAGATGTTTATCTCAAAGCTGGACTCTGAGCT 308
**** ************************************************
consensus_8852#0 GATGGTCTCCTTGTTGGTGGTCCCAGCAGGATGATCGGCACACTCCAGCATCAGCCTCAG 354
consensus_8852#1 GATGGTTTCCTTGTTGGTTGTTCCAGCAGGATGATCGGCACATTCCAGCATCAGCCTCAG 394
consensus_8852#2 GACGGGTTCCTTGGTGGTTGTTCCAGCAGGAGGATCGGGACATTTCAGGATCGGCCTCAA 416
consensus_8852#3 GATGGTTTCCTTGTTGGGGGGTCCAGCAGGATGATCGGCACATTCCAGCATCAGCCTCAA 368
** ** ****** *** * ********* ****** *** * *** *** ******
consensus_8852#0 GTGCACCGGCTTCATGATTGTCAGGGCCCTCGAATCCTTGCAGCTCTCCATCAGTAGCTC 414
consensus_8852#1 ATGCACTGGCTTCATGATTGTCAGGTCCCTCGCATCCTTGCAGCTCTCCATCAGTAGCTC 454
consensus_8852#2 ATGCCCTGGGTTCATGAGTGGCAGGACCCTCGCATCCTTGGAGGTGTCCATAAGAAGGCT 476
consensus_8852#3 ATGCACTGGCTTCATGATTGTCAGGTCCCTCGCATCCTTGCAGCTCTCCATCAGTAGCTC 428
*** * ** ******* ** **** ****** ******* ** * ***** ** **
consensus_8852#0 AACGCCTGCGTGATCCTCGCGACGCTGGCACTGGATGATCCTCTTCACCAGTGATTTCTG 474
consensus_8852#1 AACGCCTGCGTGATCCTCGCGACGCTGGCACTGGATGATCCTCTTCACCAGTGCTTGCTG 514
consensus_8852#2 AACGCCGGCGGGATCCTCGGGACGCTGGCACTGGAGGAGCCCCTCCACCAGGGGTTGCGG 536
consensus_8852#3 AACGCCTGCGTGATCCTCGCGACGCTGGCACTGGATGATCCTCTTCACCAGTGCTTGCTG 488
****** *** ******** *************** ** ** ** ****** * ** * *
consensus_8852#0 TTCTCCGTGGTCATCTTTCGCGCTATCGATCTTCAGGTACAACG-CAGCAGAGGCCAC-C 532
consensus_8852#1 TTCTCCGTGGTCATCTTTCGCGCTATCGATCTTCAGGTACAACG-CAGCAGAGGCCAC-C 572
consensus_8852#2 GTCTCCGGGGGCCGTTTTCGGGCTATGGGTGGTCAGGGTCAAGGGCACCAGGAGCCACGC 596
consensus_8852#3 TTCTCCGTGGTCATCTTTCGCGCTATCGATCTTCAGGTACAACG-CAGCAGAGGCCAC-C 546
****** ** * ***** ***** * * ***** *** * ** *** ***** *
consensus_8852#0 AGCTCGCATGTC-CCAAGACTGACATTA-ACAACACAGTTGAAATGCGCTCTTCTCTGTT 590
consensus_8852#1 AGCTCGCATGTC-CCAGGACTGACATTA-ACAACACAGCTGAAATGCACTCTTCTCTGTT 630
consensus_8852#2 GCCTCGTATGGCGCTAGAGCTGCTTGTACACGGCGAAGTTGAA-TGCAGCCTTCGCTTTG 655
consensus_8852#3 AGCTCGCATGTC-CCAGGACTGACATTA-ACAACACAGCTGAAATGCACTCTTCTCTGTT 604
**** *** * * * *** ** ** * ** **** *** **** ** *
consensus_8852#0 CTTGATAACTTCCATCTGAAAGGTTCTCATCACCTTCATGCACTGTAGGTTCCTCAGGAA 650
consensus_8852#1 CTTGATAACTTCCATCTGAAAGATTCTCATCACCTTCATGCACTGTAGGTTCCTCAGGAA 690
consensus_8852#2 CTCCGAAACCCCCCTG-GTCGCGGCCGAAACAGGTTGATGG------------------- 695
consensus_8852#3 CTTGATAACTTCCATCTGAAAGATTCTCAT------------------------------ 634
** *** ** * * * *
consensus_8852#0 CTTCAGAAAAAGCTAGGGTGTCTATCTCATCATACCATTGCTGTGCTATACCAACCTTTT 710
consensus_8852#1 CTTCAGAAAAAGCTAGGTTGTCTATCTCATCATACCATTGCTGTGCTATACC-------- 742
consensus_8852#2 ------------------------------------------------------------
consensus_8852#3 ------------------------------------------------------------
consensus_8852#0 CTGTGCTTGTGGATGGTTCATCAAAACCAGATACCTCAGCACCAGATCCCCTTACTTG 768
consensus_8852#1 ----------------------------------------------------------
consensus_8852#2 ----------------------------------------------------------
consensus_8852#3 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||