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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 922 fasta sequence
[CCTTTGTCCTTGCGTTGCCGGCGGCGGCGGCGGCGGCGGCTACGGTGGCCATGGAGATCTCACGCGACCATTTGCCGGTGAGGTCGGCTGCTCCGCCTCCGCCTCCGCATCTACGCCTGATTGATCCCCACCCCTATCTCCACTGACTGTGCTATCGCGTTTCCGGCGGTGGTTGATCGAGGCGGTAGCCCGTGCGGCGCGCGAGATTCCGCCCGTCCACGGATTTCCGGTCGCCATCGCCGGGGTTCGTCTTCTCCGGCCAGCCCCTCGCCGCGCGAACCTGCGCCGGCCGACCTCGGCCAGGATCTGGTCGGGATCGCTTGTGGGGGATGTTGAGTTGTAAGAAGACCAGATGCATCAGCTCTGATTTAGTGATTTTAGAGGCATGTATAACCAGTCAAAGAGCAGCAAAAGAAATGCGTCATAGCTGTGTGATACATAACTTTGCCAGGAGATCTCTCTATTTAAGCACACAGACTGCTATGGCATTGTTAAACATTTGCTCAGTTTCTCTTAAATGCATTTCTGCTGGCATAAGATGGTAGCATGGTGGAGGTTCTGTTGTTAAACCCTGGTATCAGGACTTGATCAAGCAGTTTGGTACGTTCGGTGAAAATTCATGCACATTTGAGCGATCGTACAGTAGTCTGAAGTTGGTGTTTTCTATCCTCCGGTAATTATGGATCACTGGTATAACGAGG-AATCAACCTAACGTATAATTGCCATGGTCTGTATTTTTGTATATGTGGAGACTGGTGTGTGTACTAATTTTCTGGAATGTCATGTAATCAGAAGAGTTGTTTAGAAGAGGCATAGGCAAATTCTCTTGTAAGGCTTTTGTAGTTCCTTGATAGTTTAACATGGTTATAACAGTAGTGTTTTCTATGACGACATTTATGATTAAACTGTGTCTACAAAAAAA]
[+] EMBL AK072818 [CCTTTGTCCTTGCGTTGCCGGCGGCGGCGGCGGCGGCGGCTACGGTGGCCATGGAGATCTCACGCGACCATTTGCCGGTGAGGTCGGCTGCTCCGCCTCCGCCTCCGCATCTACGCCTGATTGATCCCCACCCCTATCTCCACTGACTGTGCTATCGCGTTTCCGGCGGTGGTTGATCGAGGCGGTAGCCCGTGCGGCGCGCGAGATTCCGCCCGTCCACGGATTTCCGGTCGCCATCGCCGGGGTTCGTCTTCTCCGGCCAGCCCCTCGCCGCGCGAACCTGCGCCGGCCGACCTCGGCCAGGATCTGGTCGGGATCGCTTGTGGGGGATGTTGAGTTGTAAGAAGACCAGATGCATCAGCTCTGATTTAGTGATTTTAGAGGCATGTATAACCAGTCAAAGAGCAGCAAAAGAAATGCGTCATAGCTGTGTGATACATAACTTTGCCAGGAGATCTCTCTATTTAAGCACACAGACTGCTATGGCATTGTTAAACATTTGCTCAGTTTCTCTTAAATGCATTTCTGCTGGCATAAGATGGTAGCATGGTGGAGGTTCTGTTGTTAAACCCTGGTATCAGGACTTGATCAAGCAGTTTGGTACGTTCGGTGAAAATTCATGCACATTTGAGCGATCGTACAGTAGTCTGAAGTTGGTGTTTTCTATCCTCCGGTAATTATGGATCACTGGTATAACGAGG AATCAACCTAACGTATAATTGCCATGGTCTGTATTTTTGTATATGTGGAGACTGGTGTGTGTACTAATTTTCTGGAATGTCATGTAATCAGAAGAGTTGTTTAGAAGAGGCATAGGCAAATTCTCTTGTAAGGCTTTTGTAGTTCCTTGATAGTTTAACATGGTTATAACAGTAGTGTT ]
[-] EMBL CF282032 [ cgTTTGCTCAGTTGCTCTTACGTGCATTTCTGCTGGCATAAGATGGTGGCATGGTGGAGGTTCTGTTGTTAAACCCTGGTATCAGGACTTGATCGAGCAATTTGGTATGTTCGGTGAAAATTCATGCTCATTTGAGTGATTGTACAGTACTCCGAAGTTGGTGTTTTCTATGCTCCGGTAATTGTGGATCACTGGTATAATGAGGAAATCAACCTAACGTATAATTGCCATGGTCTGTATTTGTGTGTATGTGGAGACTGGTGTGTGTACTAATTTTCTGGAATGTCATTTAATCAGAAGAGTTGTTTAGAAGAGGCATAGGCAAATTCTCTTGTAAGGCTTATGTAGTTC GAGTGTTTAACATGGTTATAACAGTAGTGTTTTCTATGACGACATTTATGATTAAACTGTGTCTACAAAAAAA]
consensusID : consensus_8856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 708 fasta sequence
[AGACAAGGGGGGGGGCCCACCATTGCGTATCATATCCATCACCTTTGTCCTTGCGTTGCCGGCGGCGGCGGCGGCTACGGCCATGGAGATCTCACGCGACCATTTGCCGGTGAGGGGGATGTTGAGTTGTAAGAAGACCAGATGCATCTGCTTTGATTTTAGAGGCATGCATAACCTGTCAAAGAGCAGCAAAAGAAATGCCTCATAGCTGTGTGATACATAACTTTGCCAGGAGAGATCTCTCTATTTAAGCACACAGACTGATATGGCATTGTTAACCATTTGCTCAGTTGCTTTTAAATGCATTTTTGCTGGCATAAGATGGTAGTATGGTGGAGGTTCTGTTGTTAAACCCTGGTATCAGGACTTGATCAAGCAGTTTGGTACGTTCGGTGAAAATTCATGCACATTTGAGCGATCGTGCGGTACTCCGAAGTTGGTGTTTTCTATCCTCCGGTAATTGCGGATCACTGGTATAATGAGGAAATCAACCTAACGTATAAGTGCCATGGTCTGTATTTATGTGTATGTGGAGACTGGTGTGTGCACTAATTTTTTGGAATGTCATTTAGTCAGAAGAGTTGTTTAGAAGAGGCATAGGCAAATTTTCTTGTAAGGCTTTTGTAGTTCCTTGAGAGTTTAACATAGTTATGACAGTAGTGTTTTTTATGACGACATTTATGATTAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760123 [AGACAAGGGGGGGGGCCCACCATTGCGTATCATATCCATCACCTTTGTCCTTGCGTTGCCGGCGGCGGCGGCGGCTACGGCCATGGAGATCTCACGCGACCATTTGCCGGTGAGGGGGATGTTGAGTTGTAAGAAGACCAGATGCATCTGCTTTGATTTTAGAGGCATGCATAACCTGTCAAAGAGCAGCAAAAGAAATGCCTCATAGCTGTGTGATACATAACTTTGCCAGGAGAGATCTCTCTATTTAAGCACACAGACTGATATGGCATTGTTAACCATTTGCTCAGTTGCTTTTAAATGCATTTTTGCTGGCATAAGATGGTAGTATGGTGGAGGTTCTGTTGTTAAACCCTGGTATCAGGACTTGATCAAGCAGTTTGGTACGTTCGGTGAAAATTCATGCACATTTGAGCGATCGTGCGGTACTCCGAAGTTGGTGTTTTCTATCCTCCGGTAATTGCGGATCACTGGTATAATGAGGAAATCAACCTAACGTATAAGTGCCATGGTCTGTATTTATGTGTATGTGGAGACTGGTGTGTGCACTAATTTTTTGGAATGTCATTTAGTCAGAAGAGTTGTTTAGAAGAGGCATAGGCAAATTTTCTTGTAAGGCTTTTGTAGTTCCTTGAGAGTTTAACATAGTTATGACAGTAGTGTTTTTTATGACGACATTTATGATTAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760122 [AGACAAGGGGGGGGGCCCACCATTGCGTATCATATCCATCACCTTTGTCCTTGCGTTGCCGGCGGCGGCGGCGGCTACGGCCATGGAGATCTCACGCGACCATTTGCCGGTGAGGGGGATGTTGAGTTGTAAGAAGACCAGATGCATCTGCTTTGATTTTAGAGGCATGCATAACCTGTCAAAGAGCAGCAAAAGAAATGCCTCATAGCTGTGTGATACATAACTTTGCCAGGAGAGATCTCTCTATTTAAGCACACAGACTGATATGGCATTGTTAACCATTTGCTCAGTTGCTTTTAAATGCATTTTTGCTGGCATAAGATGGTAGTATGGTGGAGGTTCTGTTGTTAAACCCTGGTATCAGGACTTGATCAAGCAGTTTGGTACGTTCGGTGAAAATTCATGCACATTTGAGCGATCGTGCGGTACTCCGAAGTTGGTGTTTTCTATCCTCCGGTAATTGCGGATCACTGGTATAATGAGGAAATCAACCTAACGTATAAGTGCCATGGTCTGTATTTATGTGTATGTGGAGACTGGTGTGTGCACTAATTTTTTGGAATGTCATTTAGTCAGAAGAGTTGTTTAGAAGAGGCATAGGCAAATTTTCTTGTAAGGCTTTTGTAGTTCCTTGAGAGTTTAACATAGTTATGACAGTAGTGTTTTTTATGACGACATTTATGATTAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8856#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 523 fasta sequence
[TGTCCTTGCGTTGCCGCCGGCGGCGGCGGCTACGGCCATGGAGATCTCACGCGACCATTTGCCGGTGAGGTCGGCTGCTCCGCCTCCGCCTCGGCATCTACGCCTGATTGGATCCCCACCCCTATCTCCACTGACTGTGCTATCGCGTTTCCGGCGGTGGTTGATCGAGGCGGTAGCCCGTGCGGCGCGCGAGATTCCGCCCGTCCACGGATTTCCGGTCGCCATCGCGGGGATTCGTCTTCTCCGGCCAACCCCTCGCTGCGCGATCCTGCGCCGCCCGTCCTCGGGCAGGATCTGGNTCGGGGTCGCTTGTGGNGGGAATGTTGAGTTGTAAGAAGACCAGATGCATCTGCTCTGATTTTAGTGGCATGTATAACTATAACCTGTCAAAGAGCAGCAAAAGAAATGCCTCGTAGCTGTGTGATACATAACTTTGCCAGGATATCTCTCTGTTTATGCACACAGACTGCTATGGCATTTTTAACCGTTTGCTCAGTTGCTCTTACGTGCATTTCTGCTGGCA]
[+] EMBL CF282031 [TGTCCTTGCGTTGCCGCCGGCGGCGGCGGCTACGGCCATGGAGATCTCACGCGACCATTTGCCGGTGAGGTCGGCTGCTCCGCCTCCGCCTCGGCATCTACGCCTGATTGGATCCCCACCCCTATCTCCACTGACTGTGCTATCGCGTTTCCGGCGGTGGTTGATCGAGGCGGTAGCCCGTGCGGCGCGCGAGATTCCGCCCGTCCACGGATTTCCGGTCGCCATCGCGGGGATTCGTCTTCTCCGGCCAACCCCTCGCTGCGCGATCCTGCGCCGCCCGTCCTCGGGCAGGATCTGGNTCGGGGTCGCTTGTGGNGGGAATGTTGAGTTGTAAGAAGACCAGATGCATCTGCTCTGATTTTAGTGGCATGTATAACTATAACCTGTCAAAGAGCAGCAAAAGAAATGCCTCGTAGCTGTGTGATACATAACTTTGCCAGGATATCTCTCTGTTTATGCACACAGACTGCTATGGCATTTTTAACCGTTTGCTCAGTTGCTCTTACGTGCATTTCTGCTGGCA]
[+] EMBL CF298532 [ CGGCGCGCGAGATTCCGCCCGTCCACGGATTTCCGGTCGCCATCGCGGGGATTCGTCTTCTCCGGCCAACCCCTCGCTGCGCGATCCTGCGCCGCCCGTCCTCGGGCAGGATCTGG TCGGGGTCGCTTGTGG GGG ATGTTGAGTTGTAAGAAGACCAGATGCATCTGCTCTGATTTTAGTGGCATGTATAACTATAACCTGTCAAAGAGCAGCAAAAGAAATGCCTCGTAGCTGTGTGATACATAACTTTGCCAGGATATCTCTCTGTTTATGCACACAGACTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8856#0 -----------------------------------------CCTTTGTCCTTGCGTTGCC 19
consensus_8856#2 ---------------------------------------------TGTCCTTGCGTTGCC 15
consensus_8856#1 AGACAAGGGGGGGGGCCCACCATTGCGTATCATATCCATCACCTTTGTCCTTGCGTTGCC 60
***************
consensus_8856#0 GGCGGCGGCGGCGGCGGCGGCTACGGTGGCCATGGAGATCTCACGCGACCATTTGCCGGT 79
consensus_8856#2 GCCGGCGGCGGCGGCTACGGC---------CATGGAGATCTCACGCGACCATTTGCCGGT 66
consensus_8856#1 GGCGGCGGCGGCGGCTACGGC---------CATGGAGATCTCACGCGACCATTTGCCGGT 111
* ************* **** ******************************
consensus_8856#0 GAGGTCGGCTGCTCCGCCTCCGCCTCCGCATCTACGCCTGATTG-ATCCC-----CACCC 133
consensus_8856#2 GAGGTCGGCTGCTCCGCCTCCGCCTCGGCATCTACGCCTGATTGGATCCC-----CACCC 121
consensus_8856#1 GAGGG-GGATGTTGAGTTGTAAGAAGACCAGATGCATCTGCTTTGATTTTAGAGGCATGC 170
**** ** ** * * ** * * *** ** ** ** *
consensus_8856#0 CTATC---TCCACTGACTGTGCTATCGCGTTTCCGGCGGTGGTTGATCGAGGCGGTAGCC 190
consensus_8856#2 CTATC---TCCACTGACTGTGCTATCGCGTTTCCGGCGGTGGTTGATCGAGGCGGTAGCC 178
consensus_8856#1 ATAACCTGTCAAAGAGCAGCAAAAGAAATGCCTCATAGCTGTGTGATACATAACTTTGCC 230
** * ** * * * * * * ** **** * * ***
consensus_8856#0 CGTGCGGCGCGCGAGATTCC-GCCCGTCCACGGATTTCCGGTCGCCATCGCCGGGGTTCG 249
consensus_8856#2 CGTGCGGCGCGCGAGATTCC-GCCCGTCCACGGATTTCCGGTCGCCATCGCGGGGATTCG 237
consensus_8856#1 AGGAGAGATCTCTCTATTTAAGCACACAGACTGATATGGCATTGTTAACCATTTGCTCAG 290
* * * * *** ** * ** *** * * * * * * * *
consensus_8856#0 TCTTCTCCGGCCAGCCCCTCGCCGC------GCGAACCTGCGCCGGCCGACCT-CGGCCA 302
consensus_8856#2 TCTTCTCCGGCCAACCCCTCGCTGC------GCGATCCTGCGCCGCCCGTCCT-CGGGCA 290
consensus_8856#1 TTGCTTTTAAATGCATTTTTGCTGGCATAAGATGGTAGTATGGTGGAGGTTCTGTTGTTA 350
* * * ** * * * * * * ** * *
consensus_8856#0 GGATCTGGT-CGGGATCGCTTGTGGGGG--ATGTTGAGTTGTAAGAAGAC-CAGATGCAT 358
consensus_8856#2 GGATCTGGNTCGGGGTCGCTTGTGGNGGGAATGTTGAGTTGTAAGAAGAC-CAGATGCAT 349
consensus_8856#1 AACCCTGGTATCAGGACTTGATCAAGCAGTTTGGTACGTTCGGTGAAAATTCATGCACAT 410
**** * * ** * *** *** * ** ***
consensus_8856#0 CAGCTCTGATTTAGTGATTTTAGAGG-CATGTATAACCAGTCAAAGAGCAGCAAAAGAAA 417
consensus_8856#2 CTGCTCTGATTT--TAGTGGCATGTA-TAACTATAACCTGTCAAAGAGCAGCAAAAGAAA 406
consensus_8856#1 TTGAGC-GATCGTGCGGTACTCCGAAGTTGGTGTTTTCTATCCTCCGGTAATTGCGGATC 469
* * *** * * * * ** * * **
consensus_8856#0 TGCGTCATAGCTGTGTGAT--ACATAACTT-----TGCCAGGAGATCTCTCTATTTAAGC 470
consensus_8856#2 TGCCTCGTAGCTGTGTGAT--ACATAACTT-----TGCCAGGATATCTCTCTGTTTATGC 459
consensus_8856#1 ACTGGTATAATGAGGAAATCAACCTAACGTATAAGTGCCATGGTCTGTATTTATGTGTAT 529
** * ** ** **** * ***** * * * * * * *
consensus_8856#0 ACACAGACTGCTATG-GCATT--GTTAAACATTTGCTCAGTTTCTCTTAAATGCATTTCT 527
consensus_8856#2 ACACAGACTGCTATG-GCATT--TTTAACCGTTTGCTCAGTTGCTCTTACGTGCATTTCT 516
consensus_8856#1 GTGGAGACTGGTGTGTGCACTAATTTTTTGGAATG-TCATTTAGTCAGAAGAGTTGTTTA 588
****** * ** *** * ** ** *** ** ** * * **
consensus_8856#0 GCTGGCATAAGATGGTAGCATGGTGGAGGTTCTGTTGTTAAACCCTGGTATCAGGACTTG 587
consensus_8856#2 GCTGGCA----------------------------------------------------- 523
consensus_8856#1 GAAGAGGCATAGGCAAATTTTCTTGTAAGGCTTTTGTAGTTCCTTGAGAGTTTAACATAG 648
* *
consensus_8856#0 ATCAAGCAGTTTGGTACGTTCGGTGAAAATTCATGCACATTTGAGCGATCGTACAGTAGT 647
consensus_8856#2 ------------------------------------------------------------
consensus_8856#1 TTATGACAGTAGTGTTTTTTATGACGACATTTATGATTAAAAAAAAAAAAAAAAAAAAAA 708
consensus_8856#0 CTGAAGTTGGTGTTTTCTATCCTCCGGTAATTATGGATCACTGGTATAACGAGGAATCAA 707
consensus_8856#2 ------------------------------------------------------------
consensus_8856#1 ------------------------------------------------------------
consensus_8856#0 CCTAACGTATAATTGCCATGGTCTGTATTTTTGTATATGTGGAGACTGGTGTGTGTACTA 767
consensus_8856#2 ------------------------------------------------------------
consensus_8856#1 ------------------------------------------------------------
consensus_8856#0 ATTTTCTGGAATGTCATGTAATCAGAAGAGTTGTTTAGAAGAGGCATAGGCAAATTCTCT 827
consensus_8856#2 ------------------------------------------------------------
consensus_8856#1 ------------------------------------------------------------
consensus_8856#0 TGTAAGGCTTTTGTAGTTCCTTGATAGTTTAACATGGTTATAACAGTAGTGTTTTCTATG 887
consensus_8856#2 ------------------------------------------------------------
consensus_8856#1 ------------------------------------------------------------
consensus_8856#0 ACGACATTTATGATTAAACTGTGTCTACAAAAAAA 922
consensus_8856#2 -----------------------------------
consensus_8856#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||