cluster # 8860

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Oryza sativa
cluster # 8860 cluster # 8860 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8860#0 length = 693 sequences # 4

consensus_8860#1 length = 348 sequences # 1
consensus_8860#2 length = 271 sequences # 1

consensusID : consensus_8860#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 693
fasta sequence

                              [TTTTTTTTTTTTGTTTTTACTAGTATAATCCCTCTTTCAGTATTCACTGATTGATTAGTTGGGTACATCGGAAATCAAACAGTAAACCCCACTTTTTTACTCACCCATTTCTCCTATACCAAGATTACCATCTCTCTCTC-TTTTTTTTTCTGGAAGAATAAAAGATCATCTACCAACTCTATATATCATATGATCGAACCCTGGAAAAACCCAGCAAGATTGCTACTACTTCAAAAGGATTGATGAATCCAGAGAGGAGGAAAGGAAGGCGACCTTCATGTTTGCATCATCCACTCCACACACGACGGTCCACGGTCAAACATGGCACGCCGGCCGGCTGTTCGCCGGCCGGCGACGATCCACCGGCGGCGATCGATCAGTAGCACCGGTAGACGACGTAGTTGTTCCGGCGCGGCTGCGGCCGGTGGCAGATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAACCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCCCATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAGACGGAGAAGAAGAAGAAGAGCCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTGAGTGTACGGCGTCTTGCTTCGCCTGCGGAGAAAGGAGAGGCGAAATGGTGGCTGNGGCTTTGCT]

[+] EMBL CA760422             [TTTTTTTTTTTTGTTTTTACTAGTATAATCCCTCTTTCAGTATTCACTGATTGATTAGTTGGGTACATCGGAAATCAAACAGTAAACCCCACTTTTTTACTCACCCATTTCTCCTATACCAAGATTACCATCTCTCTCTC TTTTTTTTTCTGGAAGAATAAAAGATCATCTACCAACTCTATATATCATATGATCGAACCCTGGAAAAACCCAGCAAGATTGCTACTACTTCAAAAGGATTGATGAATCCAGAGAGGAGGAAAGGAAGGCGACCTTCATGTTTGCATCATCCACTCCACACACGACGGTCCACGGTCAAACATGGCACGCCGGCCGGCTGTTCGCCGGCCGGCGACGATCCACCGGCGGCGATCGATCAGTAGCACCGGTAGACGACGTANTTGTTCCGGCGCGGCTGCGGCCGGTGGCAGATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAACCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCACCGTCGTCGTCGTTGCACCCCATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAAACGGAGAAAAAGAAGAAGAGCCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTGAGTGTACGGCGGCTTGCTTCGCCTGCGGAGAAAGGAGAGGCGAAATGGTGGCTGNGGCTTTGCT]
[-] EMBL AK107714             [                            TCCCTCGTTCAGTATTCACTGATTGATTAGTTGGGTACATCGGAAATCAAACAGTAAACCCCACTTTTTTACTCACCCATTTCTCCTATACCAAGATTACCATCTCTCTCTCTTTTTTTTTTCTAGAAGAATAAAAGATCATCTACCAACTCTATATATCATATGATCGAACCCTGGAAAAACCCAGCAAGATTGCTACTATTTCAAAAGGATTGATGAATCCAGAGAGGAGGAAAGGAAGGCGACCTTCATGTTTGCATCATCCACTCCACACACGACGGTCCACGGTCAAACATGGCACGCCGGCCGGCTGTTCGCCGGCCGGCGACGATCCACCGGCGGCGATCGATCAGTAGCACCGGTAGACGACGTAGTTGTTCCGGCGCGGCTGCGGCCGGTGGCAGATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAACCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCCCATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAGACGGAGAAGAAGAAGAAGAGCCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTGAGTGTACGGCGTCTTGCTTCGCCTGCGGAGAAAGGAGAGGCGAAATGGTGGCTGtg        ]
[-] EMBL CF310067             [                                                                                                                                                                                                                                                                                                                                                                                    ATCGATCAGTAGCACCGGTAGACGACGTAGTTGTTCCGGCGCGGCTGCGGCCGGTGGCAGATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAACCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCCCATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAGACGGAGAAGAAGAAGAAGAGCCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTGAGTGTACGGCGTCTTGCTTCGCCTGCGGAGAAAGGAGAGG                        ]
[-] EMBL CF310370             [                                                                                                                                                                                                                                                                                                                                                                                       GATCAGTAGCACCGGTAGACGACGTAGTTG TCCGGCGCGGCTGCGGCCGGTGGCAGATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAACCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCCCATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAGACGGAGAAGAAGAAGAAGAGCCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTGAGTGTACGGCGTCTTGCTTCGCCTGCGGAGAAAGGAGAGG                        ]




>consensus_8860#0
TTTTTTTTTTTTGTTTTTACTAGTATAATCCCTCTTTCAGTATTCACTGATTGATTAGTT
GGGTACATCGGAAATCAAACAGTAAACCCCACTTTTTTACTCACCCATTTCTCCTATACC
AAGATTACCATCTCTCTCTCTTTTTTTTTCTGGAAGAATAAAAGATCATCTACCAACTCT
ATATATCATATGATCGAACCCTGGAAAAACCCAGCAAGATTGCTACTACTTCAAAAGGAT
TGATGAATCCAGAGAGGAGGAAAGGAAGGCGACCTTCATGTTTGCATCATCCACTCCACA
CACGACGGTCCACGGTCAAACATGGCACGCCGGCCGGCTGTTCGCCGGCCGGCGACGATC
CACCGGCGGCGATCGATCAGTAGCACCGGTAGACGACGTAGTTGTTCCGGCGCGGCTGCG
GCCGGTGGCAGATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAACCCTTTCG
GGTCCAGACCGCCGTCGCCGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCCCATGCAGC
AGCAGGACCCCATGGTTGGTGCTCCCCGGAGACGGAGAAGAAGAAGAAGAGCCCAAGTCT
AATTTGCTTCCGATGAATCTTTTGATTTGAGTGTACGGCGTCTTGCTTCGCCTGCGGAGA
AAGGAGAGGCGAAATGGTGGCTGNGGCTTTGCT

consensusID : consensus_8860#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTCTTTTTGAGCCAAACAAGACCAGATATGTACTAGTATAATCCCTCGTTCAGTATTCACTGATTGATTAGTTGGGTACATCGGAAATCAAACAGTAAACCCCACTTTTTTACTCACCCATTTCTCCTATACCAAAATTACCATCTCTCTCTCTTTTTTTTTTTCTAAAAAAATAAAAAATCATCTACCAACTCTATATATCATATGATCGAACCCTGGAAAAACCCAGCAAGATTGCTACTATTTCAAAAGGATTGATGAATCCAAAGAGGAGGAAAGGAAGGCGACCTTCATGTTTGCATCATCCACTCCACACACAACGGTCCAC]

[+] EMBL CF291435             [TTTTTTTTTTTTTTTTTTTTTTCTTTTTGAGCCAAACAAGACCAGATATGTACTAGTATAATCCCTCGTTCAGTATTCACTGATTGATTAGTTGGGTACATCGGAAATCAAACAGTAAACCCCACTTTTTTACTCACCCATTTCTCCTATACCAAAATTACCATCTCTCTCTCTTTTTTTTTTTCTAAAAAAATAAAAAATCATCTACCAACTCTATATATCATATGATCGAACCCTGGAAAAACCCAGCAAGATTGCTACTATTTCAAAAGGATTGATGAATCCAAAGAGGAGGAAAGGAAGGCGACCTTCATGTTTGCATCATCCACTCCACACACAACGGTCCAC]




>consensus_8860#1
TTTTTTTTTTTTTTTTTTTTTTCTTTTTGAGCCAAACAAGACCAGATATGTACTAGTATA
ATCCCTCGTTCAGTATTCACTGATTGATTAGTTGGGTACATCGGAAATCAAACAGTAAAC
CCCACTTTTTTACTCACCCATTTCTCCTATACCAAAATTACCATCTCTCTCTCTTTTTTT
TTTTCTAAAAAAATAAAAAATCATCTACCAACTCTATATATCATATGATCGAACCCTGGA
AAAACCCAGCAAGATTGCTACTATTTCAAAAGGATTGATGAATCCAAAGAGGAGGAAAGG
AAGGCGACCTTCATGTTTGCATCATCCACTCCACACACAACGGTCCAC

consensusID : consensus_8860#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [AGTAGCACCGGTAGACGACGTAGTTGTTCCGGCGCGGCTGCGGCCGGTGGCAGATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAACCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCCCATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAGACGGAGAAGAAGAAGAAGAGCCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTTTTTCTACTCCTTCATCCATG]

[-] EMBL CF291434             [AGTAGCACCGGTAGACGACGTAGTTGTTCCGGCGCGGCTGCGGCCGGTGGCAGATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAACCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCCCATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAGACGGAGAAGAAGAAGAAGAGCCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTTTTTCTACTCCTTCATCCATG]




>consensus_8860#2
AGTAGCACCGGTAGACGACGTAGTTGTTCCGGCGCGGCTGCGGCCGGTGGCAGATCATGA
AGAGCACCAGCGCGATCATCAGGGCCAGCAAGAACCCTTTCGGGTCCAGACCGCCGTCGC
CGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCCCATGCAGCAGCAGGACCCCATGGTTG
GTGCTCCCCGGAGACGGAGAAGAAGAAGAAGAGCCCAAGTCTAATTTGCTTCCGATGAAT
CTTTTGATTTTTTTCTACTCCTTCATCCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8860#0      TTTTTTTTTTTTGTTTTTACTAGTATAATCCCTCTTTCAGTATTCACTGATTGATTAGTT 60
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      GGGTACATCGGAAATCAAACAGTAAACCCCACTTTTTTACTCACCCATTTCTCCTATACC 120
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      AAGATTACCATCTCTCTCTCTTTTTTTTTCTGGAAGAATAAAAGATCATCTACCAACTCT 180
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      ATATATCATATGATCGAACCCTGGAAAAACCCAGCAAGATTGCTACTACTTCAAAAGGAT 240
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      TGATGAATCCAGAGAGGAGGAAAGGAAGGCGACCTTCATGTTTGCATCATCCACTCCACA 300
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      CACGACGGTCCACGGTCAAACATGGCACGCCGGCCGGCTGTTCGCCGGCCGGCGACGATC 360
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      -------TTTTTTTTTTTTTTTTTTTTTTCTTTTTGAGCCAAACAAGACCAGATATGTAC 53
                                                                                  

consensus_8860#0      CACCGGCGGCGATCGATCAGTAG-CACCGGTAGACGACGTAGTTGTTCCGGCGCGGCTGC 419
consensus_8860#2      ------------------AGTAG-CACCGGTAGACGACGTAGTTGTTCCGGCGCGGCTGC 41
consensus_8860#1      TAGTATAATCCCTCGTTCAGTATTCACTGATTGATTAGTTGGGTACATCGGAAATCAAAC 113
                                        ****  *** * * **  *  * * *    ***        *

consensus_8860#0      GGCCGGTGGCA-------GATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAA 472
consensus_8860#2      GGCCGGTGGCA-------GATCATGAAGAGCACCAGCGCGATCATCAGGGCCAGCAAGAA 94
consensus_8860#1      AGTAAACCCCACTTTTTTACTCACCCATTTCTCCTATACCAAAATTACCATCTCTCTCTC 173
                       *       **         ***   *   * **    * *  ** *    *        

consensus_8860#0      CCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCC 532
consensus_8860#2      CCCTTTCGGGTCCAGACCGCCGTCGCCGCCGCCGCTGCCGCCGTCGTCGTCGTTGCACCC 154
consensus_8860#1      TTTTTTTTTTTCTAAAAAAATAAAAAATCATCTACCAACTCTATA--TATCATATGATCG 231
                         ***    ** * *            *  *  *   * *  *     ** *   * * 

consensus_8860#0      CATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAGACGGA-GAAGAAGAAGAAGAG 591
consensus_8860#2      CATGCAGCAGCAGGACCCCATGGTTGGTGCTCCCCGGAGACGGA-GAAGAAGAAGAAGAG 213
consensus_8860#1      AACCCTGGAAAAACCCAGCAAGATTGCTACTATTTCAAAAGGATTGATGAATCCAAAGAG 291
                       *  * * *  *   *  ** * *** * **      * * *   ** ***    *****

consensus_8860#0      CCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTGAGTGTACGGCGTCTTGCTTCGC 651
consensus_8860#2      CCCAAGTCTAATTTGCTTCCGATGAATCTTTTGATTTTTTTCTACTCCTTCATCCATG-- 271
consensus_8860#1      GAGGAAAGGAAGGCGACCTTCATGTTTGCATCATCCACTCCACACACAACGGTCCAC--- 348
                          *    **   *      ***  *   *            **       * *     

consensus_8860#0      CTGCGGAGAAAGGAGAGGCGAAATGGTGGCTGNGGCTTTGCT 693
consensus_8860#2      ------------------------------------------
consensus_8860#1      ------------------------------------------