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Oryza sativa
cluster # 8871 cluster # 8871       Sequences # 6       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8871#0 length = 3324 sequences # 2  
 consensus_8871#1 length = 804 sequences # 4  
consensusID : consensus_8871#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 3324
fasta sequence 
                              [CTCTCTTGACTCTCCTCCGCCTCCCCTCCCGTCCCTCCGCCTCCATGGACGCCTACCCCCACCACCGCCGCTTCGCCGTCTCCGGCGACGCCCCCCCGCCGCCGCCGCCGCCGCAGCCGCAGCCTCCACCTCCCTCCCACGCGAGCCCGCACTGGTACCCCGGGCCGTCCCCACCGCCGTACCCTCCCCACGCCAACCACCCTTTCCCTCCCCAGCACCACCAGTGGGGACCACCCCACCCTCCGCCGCCGCTGCCGCAGCAGCCGCCGCCGTATGGGTACCATCCCTCCCTCCCTCCGATGCCGATGCAGCCGCCGCCTCCTGCGGCGGGGAATCCCTGGCCTCCTCACCACGCCGCTGCCCAGCCACCGCCGCCCAGCTACCCGCCGCCGCCTCCGGGCCAGGGCTGGGCCAATCATTCGTGGGCTCAAAGTCATGGATACGCAGGGCATGGAAATGAGGAAGATTGGGCTACAAAGGCGAAGGCATGGGCTGCTGCTAAATCTGTTACAGAAAACCATCATATTCAACAGCATGCCATATCCGCAAATAGGCCAGAAGTTCATAATTACGGTTACCAGGATCAGTATCAGCAACCAGCTGGTCTGCCCGCAGAACCTTTACGCCCGCCAATCCCTCAGTCAAGTAATGACCAGTTGCCATTTCAAATGACAGGACAGCACAGGGAAACAAACTATCTGCCAGATGGAGGTCCATTGGCGCCACCAGCAAAGAACTTTGGTTCATTTCCATCCGCCTATGAGCAGGAGGTATCTTATAATTATCCTTCTACTCCAGGTGTTGGGAATGCTATGATTCAATATCCAAGCTCGCAGACTCAGCTACCTCCAACTGCCTCAGCAATGCAAGACGGATTTCCACAAGCGCCTTCCAGTATGCATATTGCTCCCTCACTGGAACAACCTCATTTTGGGCATGATGGGCAGTCTTCCAAGATTGCAGTTGATCCCAGTGATCAACCTTTAGAATTTAATAGTAGGAAAGCTCCTGATATGGCAGTGCACAGAACAGCAAATTTCAATTCTAATATTCCAGCAGCTCCAATAGCAGCATCTGATCATGATGCACATTCAGCACCAGCGCAATCATGGATTCCATCTACTACAGTACTTTTTCCTCAAGCTTCAGTACCACCACAAGCAGCACAGATGGACCCTTCAGTTCATGCTGCACCACTCTTTGGAGCAGTTTCTGGTTCAAGCTATATTCCACCTGCAGCATTTGGAGTTGGTAATGTGACAGAAGCATTCCCTGTGGATGCAAACACTCCTTTTAATGTCACAGAAAGATCAAAGAAACCTCCAGTGCCTAACTGGCTTCGCGAAGAACTTTTGAAGAAGAAATCTACATCAGTGAGTGCTTCGGTGCAACACTCAACAGAGTTCCACTCCAAGGGATCTGAAGATGCTGAAAAAACACTTAAAAGTTCTGATCAGGCTGACAGCAGAAGCGTAGATTCAGCTAAATCTACTGATGATGATGAAGAAGATGAGGACGAAATTGAAGCAGCCCGGATGGCAGCAATGAACCAGGAAATTAAGCGTGTATTAACTGAAGTTCTCTTAAAGGTTACTGATGATCTTTTTGATGAGATCGCGACAAAAGTATTGAATGAAGATGATCCATCAGCTGAACCAAATGAGCCCACTAGAGTTTCTAGTGTGAAGGGGCCTGGTCTGGGAGAATCAAAACCAAAGGTCTCAGCTAAAGTTGTTGTCCCTGCTAAGCCAACTAATGTTAGCTCAGCTGATCATTCTGATGGTACTGGGTTAAGTTCCCCTAAAGGCGCTCTTCTTGGCCTTGCTAGTTATGATTCAGATGATGAGGACGATGAGGGTGATAATGAGGATAAGGTTCCAGTTTCAAACTTATCGTCTGAAACTAAAGCTGGCGCAGCTCGTCCAGGAGAAGGTGAAAAAGCCACTGATGGTGAACAGCATGGAAATCATAATGAAAGAAATTCTGTGGTCCAAAATGCTTCATTAGGCGAAGATCGTAAATTTAATGATGAAATGTCTCATAGGAACTCAAGTGCAGAACTTAAACAAGAGCTACGTGTTCATGACACACATAGTAGGGAATTTCCTTCAGATGCCAAAATATCAAGTCAGCCGAAGGATGTGGCTCCTACCCTGGATGAGAAGGCACATGGATATTCCCAAAATGGAAAAGTTCCACCTTCAGGCAATAATGTTGAAAATTTTAGCAATATGGAGAGCAGTCAAGGGCATTTAGGGAAGAGCAGCAATGAGGAAGATTTTGTAAAGGAGCCAAAGGCTGTTCGAAGAAAAGAATCCGAATCTTCTTCCAAAAGATATAATGATGATGATAAATCTAGCATGTATGGAAATATTGATAAAAAGGGTAGCTTCAAGGAGGAAAAAGGATCTGACAGGAGTGTGAGACATGGAGCTGATACAAGGGAACCCCGTTCCAGAGGAAACTCTAAGCAGGATGATGCAAAAGGAGAGAGAAAAGATTATCAAAAGGACGTAAGAGAGAAAAGCAGGGATTCTGCAGATAGAAGAGAGAAAGGGAAACATGAAAAGGAGGATAGGTCGAGGCAAACTACAAAGGGCTCAAGTAGTCATAGCAGTAGAAGGTCAAGATCACCAAGTGCGAGAAGTCGGACCAAGAAGGAGAGTTCTTCACATCGAGAGAGTGTCTCAAGTGATGAGCCTTCTGATAATTCGAAAAGGAGAAAACTTCATTCATGTAAAAGCAGCATGTCCCCCTCACCCCCAAAATCTAGGAACAGACGAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCGCCTTATTCATCTGCGGAAAGGAAGAAGCGTTCCAGATCCAGAACTCCAGTCAAAAGAAGATAGAAGATACTTTTGATTTCAAGATGCCTCGA-CA--TCCTTGTGAGGCGATGTGTGGCATATCGCTGCATCTTCTACTGATTCATTGAACAACGCATTCCCACGGTAGCAAGATGCCCGCGGATCACCAGTGTAGATAAGCTGGAGGTTTGCCCATACAGAGGATATTAAATCTTCTGTGCTAGCAGCCTAGCAGAGAGCAATGTACTTAATTATTTTGTAGGCCTAGCGACCCACGCAAATATGACATGTACCACCTTTCGATTTCATGTATTCCATCTTGATTGTGGAAAATTGGCAACGCCAACGCCCAGTAGGTGTGTACTGGCTTGCGATTATTTTTGTAGTTTTGAAGATTACTGTTAT-GT-TTTTTTCTTGAAACGCAGATTGTTCGTATTATTCTATTTGGCTCCCCTATCCATCTTGCTTAAAAAAAAAA]

[+] EMBL AK066532             [CTCTCTTGACTCTCCTCCGCCTCCCCTCCCGTCCCTCCGCCTCCATGGACGCCTACCCCCACCACCGCCGCTTCGCCGTCTCCGGCGACGCCCCCCCGCCGCCGCCGCCGCCGCAGCCGCAGCCTCCACCTCCCTCCCACGCGAGCCCGCACTGGTACCCCGGGCCGTCCCCACCGCCGTACCCTCCCCACGCCAACCACCCTTTCCCTCCCCAGCACCACCAGTGGGGACCACCCCACCCTCCGCCGCCGCTGCCGCAGCAGCCGCCGCCGTATGGGTACCATCCCTCCCTCCCTCCGATGCCGATGCAGCCGCCGCCTCCTGCGGCGGGGAATCCCTGGCCTCCTCACCACGCCGCTGCCCAGCCACCGCCGCCCAGCTACCCGCCGCCGCCTCCGGGCCAGGGCTGGGCCAATCATTCGTGGGCTCAAAGTCATGGATACGCAGGGCATGGAAATGAGGAAGATTGGGCTACAAAGGCGAAGGCATGGGCTGCTGCTAAATCTGTTACAGAAAACCATCATATTCAACAGCATGCCATATCCGCAAATAGGCCAGAAGTTCATAATTACGGTTACCAGGATCAGTATCAGCAACCAGCTGGTCTGCCCGCAGAACCTTTACGCCCGCCAATCCCTCAGTCAAGTAATGACCAGTTGCCATTTCAAATGACAGGACAGCACAGGGAAACAAACTATCTGCCAGATGGAGGTCCATTGGCGCCACCAGCAAAGAACTTTGGTTCATTTCCATCCGCCTATGAGCAGGAGGTATCTTATAATTATCCTTCTACTCCAGGTGTTGGGAATGCTATGATTCAATATCCAAGCTCGCAGACTCAGCTACCTCCAACTGCCTCAGCAATGCAAGACGGATTTCCACAAGCGCCTTCCAGTATGCATATTGCTCCCTCACTGGAACAACCTCATTTTGGGCATGATGGGCAGTCTTCCAAGATTGCAGTTGATCCCAGTGATCAACCTTTAGAATTTAATAGTAGGAAAGCTCCTGATATGGCAGTGCACAGAACAGCAAATTTCAATTCTAATATTCCAGCAGCTCCAATAGCAGCATCTGATCATGATGCACATTCAGCACCAGCGCAATCATGGATTCCATCTACTACAGTACTTTTTCCTCAAGCTTCAGTACCACCACAAGCAGCACAGATGGACCCTTCAGTTCATGCTGCACCACTCTTTGGAGCAGTTTCTGGTTCAAGCTATATTCCACCTGCAGCATTTGGAGTTGGTAATGTGACAGAAGCATTCCCTGTGGATGCAAACACTCCTTTTAATGTCACAGAAAGATCAAAGAAACCTCCAGTGCCTAACTGGCTTCGCGAAGAACTTTTGAAGAAGAAATCTACATCAGTGAGTGCTTCGGTGCAACACTCAACAGAGTTCCACTCCAAGGGATCTGAAGATGCTGAAAAAACACTTAAAAGTTCTGATCAGGCTGACAGCAGAAGCGTAGATTCAGCTAAATCTACTGATGATGATGAAGAAGATGAGGACGAAATTGAAGCAGCCCGGATGGCAGCAATGAACCAGGAAATTAAGCGTGTATTAACTGAAGTTCTCTTAAAGGTTACTGATGATCTTTTTGATGAGATCGCGACAAAAGTATTGAATGAAGATGATCCATCAGCTGAACCAAATGAGCCCACTAGAGTTTCTAGTGTGAAGGGGCCTGGTCTGGGAGAATCAAAACCAAAGGTCTCAGCTAAAGTTGTTGTCCCTGCTAAGCCAACTAATGTTAGCTCAGCTGATCATTCTGATGGTACTGGGTTAAGTTCCCCTAAAGGCGCTCTTCTTGGCCTTGCTAGTTATGATTCAGATGATGAGGACGATGAGGGTGATAATGAGGATAAGGTTCCAGTTTCAAACTTATCGTCTGAAACTAAAGCTGGCGCAGCTCGTCCAGGAGAAGGTGAAAAAGCCACTGATGGTGAACAGCATGGAAATCATAATGAAAGAAATTCTGTGGTCCAAAATGCTTCATTAGGCGAAGATCGTAAATTTAATGATGAAATGTCTCATAGGAACTCAAGTGCAGAACTTAAACAAGAGCTACGTGTTCATGACACACATAGTAGGGAATTTCCTTCAGATGCCAAAATATCAAGTCAGCCGAAGGATGTGGCTCCTACCCTGGATGAGAAGGCACATGGATATTCCCAAAATGGAAAAGTTCCACCTTCAGGCAATAATGTTGAAAATTTTAGCAATATGGAGAGCAGTCAAGGGCATTTAGGGAAGAGCAGCAATGAGGAAGATTTTGTAAAGGAGCCAAAGGCTGTTCGAAGAAAAGAATCCGAATCTTCTTCCAAAAGATATAATGATGATGATAAATCTAGCATGTATGGAAATATTGATAAAAAGGGTAGCTTCAAGGAGGAAAAAGGATCTGACAGGAGTGTGAGACATGGAGCTGATACAAGGGAACCCCGTTCCAGAGGAAACTCTAAGCAGGATGATGCAAAAGGAGAGAGAAAAGATTATCAAAAGGACGTAAGAGAGAAAAGCAGGGATTCTGCAGATAGAAGAGAGAAAGGGAAACATGAAAAGGAGGATAGGTCGAGGCAAACTACAAAGGGCTCAAGTAGTCATAGCAGTAGAAGGTCAAGATCACCAAGTGCGAGAAGTCGGACCAAGAAGGAGAGTTCTTCACATCGAGAGAGTGTCTCAAGTGATGAGCCTTCTGATAATTCGAAAAGGAGAAAACTTCATTCATGTAAAAGCAGCATGTCCCCCTCACCCCCAAAATCTAGGAACAGACGAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCGCCTTATTCATCTGCGGAAAGGAAGAAGCGTTCCAGATCCAGAACTCCAGTCAAAAGAAGATAGAAGATACTTTTGATTTCAAGATGCCTCGA CA  TCCTTGTGAGGCGATGTGTGGCATATCGCTGCATCTTCTACTGATTCATTGAACAACGCATTCCCACGGTAGCAAGATGCCCGCGGATCACCAGTGTAGATAAGCTGGAGGTTTGCCCATACAGAGGATATTAAATCTTCTGTGCTAGCAGCCTAGCAGAGAGCAATGTACTTAATTATTTTGTAGGCCTAGCGACCCACGCAAATATGACATGTACCACCTTTCGATTTCATGTATTCCATCTTGATTGTGGAAAATTGGCAACGCCAACGCCCAGTAGGTGTGTACTGGCTTGCGATTATTTTTGTAGTTTTGAAGATTACTGTTAT GT TTTTTTCTTGAAACGCAGATTGTTC                                              ]
[+] EMBL BM421699             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GATAGAAGATACTTTTGATTTCNAGAGGCCGCGAGCAGGGCCTT TGA GCGATGTGTGGCATATCGCTGCATCTTCTACTGATTCATTGAACAACGCATTCCCACGGTAGCAAGATGCCCGCGGATCACCAGTGTAGATAAGCTGGAGGTTTGCCCATACAGAGGATATTAAATCTTCTGTGCTAGCAGCCTAGCAGAGAGCAATGTACTTAATTATTTTGTAGGCCTAGCGACCCACGCAAATATGACATGTACCACCTTTCGATTTCATGTATTCCATCTTGATTGTGGAAAATT GCAACGCCAACGCCCAGTAGGTGTGTACTGGCTTGCGATTATTTTTGTAGTTTTGAAGATTACTGTTATGGTGTTTTTTCTTGAAACGCAGATTGTTCGTATTATTCTATTTGGCTCCCCTATCCATCTTGCTTAAAAAAAAAA]




>consensus_8871#0
CTCTCTTGACTCTCCTCCGCCTCCCCTCCCGTCCCTCCGCCTCCATGGACGCCTACCCCC
ACCACCGCCGCTTCGCCGTCTCCGGCGACGCCCCCCCGCCGCCGCCGCCGCCGCAGCCGC
AGCCTCCACCTCCCTCCCACGCGAGCCCGCACTGGTACCCCGGGCCGTCCCCACCGCCGT
ACCCTCCCCACGCCAACCACCCTTTCCCTCCCCAGCACCACCAGTGGGGACCACCCCACC
CTCCGCCGCCGCTGCCGCAGCAGCCGCCGCCGTATGGGTACCATCCCTCCCTCCCTCCGA
TGCCGATGCAGCCGCCGCCTCCTGCGGCGGGGAATCCCTGGCCTCCTCACCACGCCGCTG
CCCAGCCACCGCCGCCCAGCTACCCGCCGCCGCCTCCGGGCCAGGGCTGGGCCAATCATT
CGTGGGCTCAAAGTCATGGATACGCAGGGCATGGAAATGAGGAAGATTGGGCTACAAAGG
CGAAGGCATGGGCTGCTGCTAAATCTGTTACAGAAAACCATCATATTCAACAGCATGCCA
TATCCGCAAATAGGCCAGAAGTTCATAATTACGGTTACCAGGATCAGTATCAGCAACCAG
CTGGTCTGCCCGCAGAACCTTTACGCCCGCCAATCCCTCAGTCAAGTAATGACCAGTTGC
CATTTCAAATGACAGGACAGCACAGGGAAACAAACTATCTGCCAGATGGAGGTCCATTGG
CGCCACCAGCAAAGAACTTTGGTTCATTTCCATCCGCCTATGAGCAGGAGGTATCTTATA
ATTATCCTTCTACTCCAGGTGTTGGGAATGCTATGATTCAATATCCAAGCTCGCAGACTC
AGCTACCTCCAACTGCCTCAGCAATGCAAGACGGATTTCCACAAGCGCCTTCCAGTATGC
ATATTGCTCCCTCACTGGAACAACCTCATTTTGGGCATGATGGGCAGTCTTCCAAGATTG
CAGTTGATCCCAGTGATCAACCTTTAGAATTTAATAGTAGGAAAGCTCCTGATATGGCAG
TGCACAGAACAGCAAATTTCAATTCTAATATTCCAGCAGCTCCAATAGCAGCATCTGATC
ATGATGCACATTCAGCACCAGCGCAATCATGGATTCCATCTACTACAGTACTTTTTCCTC
AAGCTTCAGTACCACCACAAGCAGCACAGATGGACCCTTCAGTTCATGCTGCACCACTCT
TTGGAGCAGTTTCTGGTTCAAGCTATATTCCACCTGCAGCATTTGGAGTTGGTAATGTGA
CAGAAGCATTCCCTGTGGATGCAAACACTCCTTTTAATGTCACAGAAAGATCAAAGAAAC
CTCCAGTGCCTAACTGGCTTCGCGAAGAACTTTTGAAGAAGAAATCTACATCAGTGAGTG
CTTCGGTGCAACACTCAACAGAGTTCCACTCCAAGGGATCTGAAGATGCTGAAAAAACAC
TTAAAAGTTCTGATCAGGCTGACAGCAGAAGCGTAGATTCAGCTAAATCTACTGATGATG
ATGAAGAAGATGAGGACGAAATTGAAGCAGCCCGGATGGCAGCAATGAACCAGGAAATTA
AGCGTGTATTAACTGAAGTTCTCTTAAAGGTTACTGATGATCTTTTTGATGAGATCGCGA
CAAAAGTATTGAATGAAGATGATCCATCAGCTGAACCAAATGAGCCCACTAGAGTTTCTA
GTGTGAAGGGGCCTGGTCTGGGAGAATCAAAACCAAAGGTCTCAGCTAAAGTTGTTGTCC
CTGCTAAGCCAACTAATGTTAGCTCAGCTGATCATTCTGATGGTACTGGGTTAAGTTCCC
CTAAAGGCGCTCTTCTTGGCCTTGCTAGTTATGATTCAGATGATGAGGACGATGAGGGTG
ATAATGAGGATAAGGTTCCAGTTTCAAACTTATCGTCTGAAACTAAAGCTGGCGCAGCTC
GTCCAGGAGAAGGTGAAAAAGCCACTGATGGTGAACAGCATGGAAATCATAATGAAAGAA
ATTCTGTGGTCCAAAATGCTTCATTAGGCGAAGATCGTAAATTTAATGATGAAATGTCTC
ATAGGAACTCAAGTGCAGAACTTAAACAAGAGCTACGTGTTCATGACACACATAGTAGGG
AATTTCCTTCAGATGCCAAAATATCAAGTCAGCCGAAGGATGTGGCTCCTACCCTGGATG
AGAAGGCACATGGATATTCCCAAAATGGAAAAGTTCCACCTTCAGGCAATAATGTTGAAA
ATTTTAGCAATATGGAGAGCAGTCAAGGGCATTTAGGGAAGAGCAGCAATGAGGAAGATT
TTGTAAAGGAGCCAAAGGCTGTTCGAAGAAAAGAATCCGAATCTTCTTCCAAAAGATATA
ATGATGATGATAAATCTAGCATGTATGGAAATATTGATAAAAAGGGTAGCTTCAAGGAGG
AAAAAGGATCTGACAGGAGTGTGAGACATGGAGCTGATACAAGGGAACCCCGTTCCAGAG
GAAACTCTAAGCAGGATGATGCAAAAGGAGAGAGAAAAGATTATCAAAAGGACGTAAGAG
AGAAAAGCAGGGATTCTGCAGATAGAAGAGAGAAAGGGAAACATGAAAAGGAGGATAGGT
CGAGGCAAACTACAAAGGGCTCAAGTAGTCATAGCAGTAGAAGGTCAAGATCACCAAGTG
CGAGAAGTCGGACCAAGAAGGAGAGTTCTTCACATCGAGAGAGTGTCTCAAGTGATGAGC
CTTCTGATAATTCGAAAAGGAGAAAACTTCATTCATGTAAAAGCAGCATGTCCCCCTCAC
CCCCAAAATCTAGGAACAGACGAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCA
GGCATTCGCCTTATTCATCTGCGGAAAGGAAGAAGCGTTCCAGATCCAGAACTCCAGTCA
AAAGAAGATAGAAGATACTTTTGATTTCAAGATGCCTCGACATCCTTGTGAGGCGATGTG
TGGCATATCGCTGCATCTTCTACTGATTCATTGAACAACGCATTCCCACGGTAGCAAGAT
GCCCGCGGATCACCAGTGTAGATAAGCTGGAGGTTTGCCCATACAGAGGATATTAAATCT
TCTGTGCTAGCAGCCTAGCAGAGAGCAATGTACTTAATTATTTTGTAGGCCTAGCGACCC
ACGCAAATATGACATGTACCACCTTTCGATTTCATGTATTCCATCTTGATTGTGGAAAAT
TGGCAACGCCAACGCCCAGTAGGTGTGTACTGGCTTGCGATTATTTTTGTAGTTTTGAAG
ATTACTGTTATGTTTTTTTCTTGAAACGCAGATTGTTCGTATTATTCTATTTGGCTCCCC
TATCCATCTTGCTTAAAAAAAAAA

consensusID : consensus_8871#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 804
fasta sequence 
                              [GTATCAACCCACTACATTGCCCAAAGTCAAACCAATCTAGACATCAAAGTTCGCAGTTAGGATCGGCAGATGCCCAATTCAGCATCCATTCGTCCAAAGCAAACAACCCTAGTAATATTACTAATGTTAAAAAAACCACTGAAAACAGAGAGGCCACCAATTCAGGTTTTATTGGGACAGAGCTGATATGCTGGCCTGCCTCCAATCCTAGACACTGAAGCAAATGCGTGAACTCCTATAAATCTGGAACCCTGTCTGCCCTATGCCACTTGTGTAGTAACTGTGTTACTTTGTGTTATATTGGTGGTGTCTTTAAATCTGTGTCTAATCATTTCAGGAAGAAGCGTTCCAGATCCAGAACTCCAGTCAAAAGAAGATAGAAGATACTTTTGATTTCAAGATGCCTCGACATCCTTGTGAGGCGATGTGTGGCATATCGCTGCATCTTCTACTGATTCATTGAACAACGCATTCCCACGGTAGCAAGATGCCCGCGGATCACCAGTGTAGATAAGCTGGAGGTTTGCCCATACAGAGGATATTAAATCTTCTGTGCTAGCAGCCTAGCAGAGAGCAATGTACTTAATTATTTTGTAGGCCTAGCGACCCACGCAAATATGACATGTACCACCTTTCGATTTCATGTATTCCATCTTGATTGTGGAAAATTGGCAACGCCAACGCCCAGTAGGTGTGTACTGGCTTGCGATTATTTTTGTAGTTTTGAAGATTACTGTTATGTTTTTTTCTTGAAACGCAGATGGTTCGTATTATTCTATTTGGCTCGCTTATCAAAAAAAAAGG]

[-] EMBL CB641835             [GTATCAACCCACTACATTGCCCAAAGTCAAACCAATCTAGACATCAAAGTTCGCAGTTAGGATCGGCAGATGCCCAATTCAGCATCCATTCGTCCAAAGCAAACAACCCTAGTAATATTACTAATGTTAAAAAAACCACTGAAAACAGAGAGGCCACCAATTCAGGTTTTATTGGGACAGAGCTGATATGTTGGCCTGCCTCCAATCCTAGACACTGAAGCAAATGCGTGAACTCCTATAAATCTGGAACCCTGTCTGCCCTATGCCACTTGTGTAGTAACTGTGTTACTTTGTGTTATATTGGTGGTGTCTTTAAATCTGTGTCTAATCATTTCAGGAAGAAGCGTTCCAGATCCAGAACTCCAGTCAAAAGAAGATAGAAGATACTTTTGATTTCAAGATGCCTCGACATCCTTGTGAGGCGATGTGTGGCATATCGCTGCATCTTCTACTGATTCATTGAACAACGCATTCCCACGGTAGCAAGATGCCCGCGGATCACCAGTGTAGATAAGCTGGAGGTTTGCCCATACAGAGGATATTAAATCTTCTGTGCTAGCAGCCTAGCAGAGAGCAATGTACTTAATTATTTTGTAGGCCTAGCGACCCACGCAAATATGACATGTGCCACCTTTCGATTTCATGTATTCCATCTTGATTGTGGAAAATTGGCAACGCCAACGCCCAGTAGGTGTGTACTGGCTTGCGATTATTTTTGTAGTTTGGAAGATTACTGTTATGTTTTTTTCTTGAAACGCAGATTGTTCGTATTATTCTATTTGGCTCGCTTATCAAAAAAAAAGG]
[-] EMBL CB641845             [                           CAAACCAAACTAGACATCAAAGTTCGCAGTTAGGATCGGCAGATGCCCAATTCAGCATCCATTCGTCCAAAGCAAACAACCCTAGTAATATTACTAATGTTAAAAAAACCACTGAAAACAGAGAGGCCACCAATTCAGGTTTTATTGGGACAGAGCTGATATGCTGGCCTGCCTCCAATCCTAGACACTGAAGCAAATGCGTGAACTCCTATAAATCTGGAACCCTGTCTGCCCTATGCCACTTGTGTAGTAACTGTGTTACTTTGTGTTATATTGGTGGTGTCTTTAAATCTGTGTCTAATCATTTCAGGAAGAAGCGTTCCAGATCCAGAACTCCAGTCAAAAGAAGATAGAAGATACTTTTGATTTCAAGATGCCTCGACATCCTTGTGAGGCGATGTGTGGCATATCGCTGCATCTTCTACTGATTCATTGAACAACGCATTCCCACGGTAGCAAGATGCCCGCGGATCACCAGTGTAGATAAGCTGGAGGTTTGCCCATACAGAGGATATTAAATCTTCTGTGCTAGCAGCCTAGCAGAGAGCAATGTACTTAATTATTTTGTAGGCCTAGCGACCCACGCAAATATGACATGTACCACCTTTCGATTTCATGTATTCCATCTTGATTGTGGAAAATTGGCAACGCCAACGCCCAGTAGGTGTGTACTGGCTTGCGATTATTTTTGTAGTTTTGAAGATTACTGTTATGTTTTTTTCTTGAAACGCAGATGGTTCGTATTATTCTATTTGGC                    ]
[-] EMBL CB641918             [                                            CAAAGTTCGCAGTTAGGATCGGCAGATGCCCAATTCAGCATCCATTCGTCCAAAGCAAACAACCCTAGTAATATTACTAATGTTAAAAAAACCACTGAAAACAGAGAGGCCACCAATTCAGGTTTTATTGGGACAGAGCTGATATGCTGGCCTGCCTCCAATCCTAGACACTGAAGCAAATGCGTGAACTCCTATAAATCTGGAACCCTGTCTGCCCTATGCCACTTGTGTAGTAACTGTGTTACTTTGTGTTATATTGGTGGTGTCTTTAAATCTGTGTCTAATCATTTCAGGAAGAAGCGTTCCAGATCCAGAACTCCAGTCAAAAGAAGATAGAAGATACTTTTGATTTCAAGATGCCTCGACATCCTTGTGAGGCGATGTGTGGCATATCGCTGCATCTTCTACTGATTCATTGAACAACGCATTCCCACGGTAGCAAGATGCCCGCGGATCACCAGTGTAGATAAGCTGGAGGTTTGCCCATACAGAGGATATTAAATCTTCTGTGCTAGCAGCCTAGCAGAGAGCAATGTACTTAATTATTTTGTAGGCCTAGCGACCCACGCAAATATGACATGTACCACCTTTCGATTTCATGTATTCCATCTTGATTGTGGAAAATTGGCAACGCCAACGCCCAGTAGGTGTGTACTGGCTTGCGATTATTTTTGTAGTTTTGAAGATTACTGTTATGTTTTTTTCTTGAAACGCAGATGGTTCGTATTATTCTATTTGGCTCGCCTATCAAAAAAAAAag]
[+] EMBL BI813152             [                                                                                                                                                                                                                                                                                                                                                                                                        ATTTCAAGATGCCTCGACATCCTTGTGAGGCGATGTGTGGCATATCGCTGCATCTTCTACTGATTCATTGAACAACGCATTCCCACGGTAGCAAGATGCCCGCGGATCACCAGTGTAGATAAGCTGGAGGTTTGCCCATACAGAGGATATTAAATCTTCTGTGCTAGCAGCCTAGCAGAGAGCAATGTACTTAATTATTTTGTAGGCCTAGCGACCCACGCAAATATGACATGTACCACCTTTCGATTTCATGTATTCCATCTTGATTGTGGAAAATTGGCAACGCCAACGCCCAGTAGGTGTGTACTGGCTTGCGATTATTTTTGTAGTTTTGAAGATTACTGTTATGTTTTTTTCTTGAAAaaaaaaa                                          ]




>consensus_8871#1
GTATCAACCCACTACATTGCCCAAAGTCAAACCAATCTAGACATCAAAGTTCGCAGTTAG
GATCGGCAGATGCCCAATTCAGCATCCATTCGTCCAAAGCAAACAACCCTAGTAATATTA
CTAATGTTAAAAAAACCACTGAAAACAGAGAGGCCACCAATTCAGGTTTTATTGGGACAG
AGCTGATATGCTGGCCTGCCTCCAATCCTAGACACTGAAGCAAATGCGTGAACTCCTATA
AATCTGGAACCCTGTCTGCCCTATGCCACTTGTGTAGTAACTGTGTTACTTTGTGTTATA
TTGGTGGTGTCTTTAAATCTGTGTCTAATCATTTCAGGAAGAAGCGTTCCAGATCCAGAA
CTCCAGTCAAAAGAAGATAGAAGATACTTTTGATTTCAAGATGCCTCGACATCCTTGTGA
GGCGATGTGTGGCATATCGCTGCATCTTCTACTGATTCATTGAACAACGCATTCCCACGG
TAGCAAGATGCCCGCGGATCACCAGTGTAGATAAGCTGGAGGTTTGCCCATACAGAGGAT
ATTAAATCTTCTGTGCTAGCAGCCTAGCAGAGAGCAATGTACTTAATTATTTTGTAGGCC
TAGCGACCCACGCAAATATGACATGTACCACCTTTCGATTTCATGTATTCCATCTTGATT
GTGGAAAATTGGCAACGCCAACGCCCAGTAGGTGTGTACTGGCTTGCGATTATTTTTGTA
GTTTTGAAGATTACTGTTATGTTTTTTTCTTGAAACGCAGATGGTTCGTATTATTCTATT
TGGCTCGCTTATCAAAAAAAAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8871#0      CTCTCTTGACTCTCCTCCGCCTCCCCTCCCGTCCCTCCGCCTCCATGGACGCCTACCCCC 60
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      ACCACCGCCGCTTCGCCGTCTCCGGCGACGCCCCCCCGCCGCCGCCGCCGCCGCAGCCGC 120
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      AGCCTCCACCTCCCTCCCACGCGAGCCCGCACTGGTACCCCGGGCCGTCCCCACCGCCGT 180
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      ACCCTCCCCACGCCAACCACCCTTTCCCTCCCCAGCACCACCAGTGGGGACCACCCCACC 240
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      CTCCGCCGCCGCTGCCGCAGCAGCCGCCGCCGTATGGGTACCATCCCTCCCTCCCTCCGA 300
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      TGCCGATGCAGCCGCCGCCTCCTGCGGCGGGGAATCCCTGGCCTCCTCACCACGCCGCTG 360
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      CCCAGCCACCGCCGCCCAGCTACCCGCCGCCGCCTCCGGGCCAGGGCTGGGCCAATCATT 420
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      CGTGGGCTCAAAGTCATGGATACGCAGGGCATGGAAATGAGGAAGATTGGGCTACAAAGG 480
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      CGAAGGCATGGGCTGCTGCTAAATCTGTTACAGAAAACCATCATATTCAACAGCATGCCA 540
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      TATCCGCAAATAGGCCAGAAGTTCATAATTACGGTTACCAGGATCAGTATCAGCAACCAG 600
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      CTGGTCTGCCCGCAGAACCTTTACGCCCGCCAATCCCTCAGTCAAGTAATGACCAGTTGC 660
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      CATTTCAAATGACAGGACAGCACAGGGAAACAAACTATCTGCCAGATGGAGGTCCATTGG 720
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      CGCCACCAGCAAAGAACTTTGGTTCATTTCCATCCGCCTATGAGCAGGAGGTATCTTATA 780
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      ATTATCCTTCTACTCCAGGTGTTGGGAATGCTATGATTCAATATCCAAGCTCGCAGACTC 840
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      AGCTACCTCCAACTGCCTCAGCAATGCAAGACGGATTTCCACAAGCGCCTTCCAGTATGC 900
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      ATATTGCTCCCTCACTGGAACAACCTCATTTTGGGCATGATGGGCAGTCTTCCAAGATTG 960
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      CAGTTGATCCCAGTGATCAACCTTTAGAATTTAATAGTAGGAAAGCTCCTGATATGGCAG 1020
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      TGCACAGAACAGCAAATTTCAATTCTAATATTCCAGCAGCTCCAATAGCAGCATCTGATC 1080
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      ATGATGCACATTCAGCACCAGCGCAATCATGGATTCCATCTACTACAGTACTTTTTCCTC 1140
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      AAGCTTCAGTACCACCACAAGCAGCACAGATGGACCCTTCAGTTCATGCTGCACCACTCT 1200
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      TTGGAGCAGTTTCTGGTTCAAGCTATATTCCACCTGCAGCATTTGGAGTTGGTAATGTGA 1260
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      CAGAAGCATTCCCTGTGGATGCAAACACTCCTTTTAATGTCACAGAAAGATCAAAGAAAC 1320
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      CTCCAGTGCCTAACTGGCTTCGCGAAGAACTTTTGAAGAAGAAATCTACATCAGTGAGTG 1380
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      CTTCGGTGCAACACTCAACAGAGTTCCACTCCAAGGGATCTGAAGATGCTGAAAAAACAC 1440
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      TTAAAAGTTCTGATCAGGCTGACAGCAGAAGCGTAGATTCAGCTAAATCTACTGATGATG 1500
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      ATGAAGAAGATGAGGACGAAATTGAAGCAGCCCGGATGGCAGCAATGAACCAGGAAATTA 1560
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      AGCGTGTATTAACTGAAGTTCTCTTAAAGGTTACTGATGATCTTTTTGATGAGATCGCGA 1620
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      CAAAAGTATTGAATGAAGATGATCCATCAGCTGAACCAAATGAGCCCACTAGAGTTTCTA 1680
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      GTGTGAAGGGGCCTGGTCTGGGAGAATCAAAACCAAAGGTCTCAGCTAAAGTTGTTGTCC 1740
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      CTGCTAAGCCAACTAATGTTAGCTCAGCTGATCATTCTGATGGTACTGGGTTAAGTTCCC 1800
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      CTAAAGGCGCTCTTCTTGGCCTTGCTAGTTATGATTCAGATGATGAGGACGATGAGGGTG 1860
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      ATAATGAGGATAAGGTTCCAGTTTCAAACTTATCGTCTGAAACTAAAGCTGGCGCAGCTC 1920
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      GTCCAGGAGAAGGTGAAAAAGCCACTGATGGTGAACAGCATGGAAATCATAATGAAAGAA 1980
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      ATTCTGTGGTCCAAAATGCTTCATTAGGCGAAGATCGTAAATTTAATGATGAAATGTCTC 2040
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      ATAGGAACTCAAGTGCAGAACTTAAACAAGAGCTACGTGTTCATGACACACATAGTAGGG 2100
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      AATTTCCTTCAGATGCCAAAATATCAAGTCAGCCGAAGGATGTGGCTCCTACCCTGGATG 2160
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      AGAAGGCACATGGATATTCCCAAAATGGAAAAGTTCCACCTTCAGGCAATAATGTTGAAA 2220
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      ATTTTAGCAATATGGAGAGCAGTCAAGGGCATTTAGGGAAGAGCAGCAATGAGGAAGATT 2280
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      TTGTAAAGGAGCCAAAGGCTGTTCGAAGAAAAGAATCCGAATCTTCTTCCAAAAGATATA 2340
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      ATGATGATGATAAATCTAGCATGTATGGAAATATTGATAAAAAGGGTAGCTTCAAGGAGG 2400
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      AAAAAGGATCTGACAGGAGTGTGAGACATGGAGCTGATACAAGGGAACCCCGTTCCAGAG 2460
consensus_8871#1      ------------------------------------------------------------
                                                                                  

consensus_8871#0      GAAACTCTAAGCAGGATGATGCAAAAGGAGAGAGAAAAGATTATCAAAAGGACGTAAGAG 2520
consensus_8871#1      --------------------------------GTATCAACCCACTACATTGCCCAAAGTC 28
                                                        *  *    *  * *  * *  ***  

consensus_8871#0      AGAAAAGCAGGGATTCTGCAGATAGAAGAGAGAAAGGG-AAACATGAAAAGGAGGATAGG 2579
consensus_8871#1      AAACCAATCTAGACATCAAAGTTCGCAGTTAGGATCGGCAGATGCCCAATTCAGCATCCA 88
                      * *  *     **      ** * * **  ** *  ** * *     **   ** **   

consensus_8871#0      TCGAGGCAAACTACAAAGGGCTCAAGTAGTCATAGCAGTAGAAGGTCAAGATCACCAAGT 2639
consensus_8871#1      TTCGTCCAAA--GCAAACAACCCTAGTAATATTACTAAT-----GTTAAAAAAACCAC-T 140
                      *     ****   ****   * * **** *  **  * *     ** ** *  ****  *

consensus_8871#0      GCGAGAAGTCGGACCAAGAAGGAGAGTTCTTCACATCGAGAGAGTGTCTCAAGTGATGAG 2699
consensus_8871#1      GAAAACAGAGAGGCCACCAATTCAGGTTTT----ATTGGGACAGAG-CTGATATGCTG-G 194
                      *  *  **   * ***  **     *** *    ** * ** ** * ** *  ** ** *

consensus_8871#0      CCTTCTGATAATTCGAAAA---GGAGAAAAC---TTCATTCATGTAAA---AGCAGCATG 2750
consensus_8871#1      CCTGCCTCCAATCCTAGACACTGAAGCAAATGCGTGAACTCCTATAAATCTGGAACCCTG 254
                      *** *    *** * * *    * ** ***    *  * ** * ****    * * * **

consensus_8871#0      TCCCCCTCACCCCCAAAATCTAGGAACAGACGAGTTTCGCGGTCTCCACATAGCAAGCAT 2810
consensus_8871#1      TCTGCCCTATGCCACTTGTGTAGTAACTGTGTTACTTTGTGTT----ATATTGGTGGTGT 310
                      **  **  *  **     * *** *** *      ** * * *    * ** *   *  *

consensus_8871#0      TCTCACCGCAGGCATTCGCCTTATTCATCTGCGGAAAGGAAGAAGCGTTCCAGATCCAGA 2870
consensus_8871#1      CTTTA-----AATCTGTGTCTAAT-CATTTC-----AGGAAGAAGCGTTCCAGATCCAGA 359
                        * *         *  * ** ** *** *      ************************

consensus_8871#0      ACTCCAGTCAAAAGAAGATAGAAGATACTTTTGATTTCAAGATGCCTCGACATCCTTGTG 2930
consensus_8871#1      ACTCCAGTCAAAAGAAGATAGAAGATACTTTTGATTTCAAGATGCCTCGACATCCTTGTG 419
                      ************************************************************

consensus_8871#0      AGGCGATGTGTGGCATATCGCTGCATCTTCTACTGATTCATTGAACAACGCATTCCCACG 2990
consensus_8871#1      AGGCGATGTGTGGCATATCGCTGCATCTTCTACTGATTCATTGAACAACGCATTCCCACG 479
                      ************************************************************

consensus_8871#0      GTAGCAAGATGCCCGCGGATCACCAGTGTAGATAAGCTGGAGGTTTGCCCATACAGAGGA 3050
consensus_8871#1      GTAGCAAGATGCCCGCGGATCACCAGTGTAGATAAGCTGGAGGTTTGCCCATACAGAGGA 539
                      ************************************************************

consensus_8871#0      TATTAAATCTTCTGTGCTAGCAGCCTAGCAGAGAGCAATGTACTTAATTATTTTGTAGGC 3110
consensus_8871#1      TATTAAATCTTCTGTGCTAGCAGCCTAGCAGAGAGCAATGTACTTAATTATTTTGTAGGC 599
                      ************************************************************

consensus_8871#0      CTAGCGACCCACGCAAATATGACATGTACCACCTTTCGATTTCATGTATTCCATCTTGAT 3170
consensus_8871#1      CTAGCGACCCACGCAAATATGACATGTACCACCTTTCGATTTCATGTATTCCATCTTGAT 659
                      ************************************************************

consensus_8871#0      TGTGGAAAATTGGCAACGCCAACGCCCAGTAGGTGTGTACTGGCTTGCGATTATTTTTGT 3230
consensus_8871#1      TGTGGAAAATTGGCAACGCCAACGCCCAGTAGGTGTGTACTGGCTTGCGATTATTTTTGT 719
                      ************************************************************

consensus_8871#0      AGTTTTGAAGATTACTGTTATGTTTTTTTCTTGAAACGCAGATTGTTCGTATTATTCTAT 3290
consensus_8871#1      AGTTTTGAAGATTACTGTTATGTTTTTTTCTTGAAACGCAGATGGTTCGTATTATTCTAT 779
                      ******************************************* ****************

consensus_8871#0      TTGGCTCCCCTATCCATCTTGCTTAAAAAAAAAA 3324
consensus_8871#1      TTGGCTCGCTTATCAA--------AAAAAAAGG- 804
                      ******* * **** *        *******


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)