cluster # 8874

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Oryza sativa
cluster # 8874 cluster # 8874 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8874#0 length = 3100 sequences # 4

consensus_8874#1 length = 265 sequences # 1
consensus_8874#2 length = 201 sequences # 1

consensusID : consensus_8874#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 3100
fasta sequence

                              [AACTTGCTCCAAATCGAAGTATTATTTTCTCTCGCGATTTCTCCGATTTTTTTTTCTAGCGATAAATTAATTAATGCTCCTCTCGCCGCGCCGGGAAAGCATTTAAATCTCCCCCTCCTCCGCGCGGTTCTCCCAACCCAAACCCTACCACGATTCCTCCCCACTCCCAATCCAATCGCCGCGGCGGAGGCGGCGGGCGCGCGTGCACACCAGGTGTTCGACGGAAGGCCTCGCCGGGTGGGGGGCGAAGATGTACGTGGTGAAGCGGGACGGGCGGCAGGAGACGGTGCACTTCGACAAGATCACGGCGCGGCTGAAGAAGCTCAGCTACGGCCTCAGCCAGGAGCACTGCGACCCGGTGCTCGTCGCGCAGAAGGTATGCGCGGGTGTGTACAAGGGCGTCACCACCAGCCAGCTCGACGAGCTCGCTGCCGAGACTGCCGCCGCCATGACCGCGTCCCACCCCGACTACGCCTCGCTCGCGGCGAGGATTGCGGTTTCCAACCTGCACAAGAACACCAAGAAGTCCTTCTCGGAGACGATTAAGGACATGTATGGACATTTCAACGAGAGATCTGGGCTGAATGCTCCTTTGGTTGCCCACGATGTATATGAAGTCATCATGAAGAATGCTTCTCGCTTGGACAGCGAGATAATTTATGATAGGGACTTCGATTATGATTATTTTGGTTTCAAGACTCTGGAGAGGTCTTACCTCCTGAAACTTGGCGGGAAGGTTGTTGAAAGGCCGCAACACATGTTAATGAGAGTTTCAGTAGGTATACACAAGGATGACATTGAGTCTGCTATCAAGACCTACCATCTGATGTCTCAGCGCTGGTTTACTCATGCTTCACCGACCCTTTTCAATGCTGGCACTACAAGGCCCCAATTAAGCAGCTGTTTCCTTATCTGCATGAAAGATGACAGCATTGAGGGAATCTATGATACTTTGAAGGAATGTGCTGTCATAAGCAAATCTGCTGGAGGAATTGGTGTATCAGTTCACAATATTCGAGCTACTGGGAGCTATATCCGTGGAACAAATGGAACCTCCAATGGGATTGTTCCTATGCTACGTGTTTTCAATGATACTGCCCGTTATGTTGATCAAGGTGGAGGCAAGAGAAAGGGTGCATTTGCTGTGTACTTGGAGCCTTGGCATGCGGATATTTTTGAGTTCCTTGATCTGAGAAAGAATCATGGGAAGGAGGAGCATCGTGCAAGGGATCTTTTCTATGCACTCTGGGTTCCTGATCTATTCATGCAAAGAGTCCAAAATAACCAAGAATGGTCATTGTTTTGTCCCAATGAAGCTCCAGGGTTAGCTGATTGCTGGGGTGATGAGTTTGAGAAACTGTACACAAAATATGAGAGAGAGGGCAAGGCAAAGAAAATTGTCCCAGCTCAGACCCTCTGGTTTGACATTTTAAAGGCACAGATAGAAACTGGTACACCATATATGCTTTACAAGGATACATGCAATAGGAAAAGTAACCAGCAGAATTTGGGCACAATTAAATCTTCAAACTTATGCACTGAGATAATTGAGTACACAAGCCCTACTGAAACTGCTGTCTGCAATCTGGCATCTATTGCTTTACCACGTTTTGTAAGGGAAAAGGGTGTCCCCATAGAGTCCCATCCATCTAAACTTGTCGGGAGCAGTGATTCTAAAAATAGATATTTTGACTTTGACAAGCTTGCTGAGGTTACTTCAACTGTCACATACAATCTCAACAAAATAATTGATATTAATTATTACCCTGTTGAAACCGCAAAAAGATCAAATATGCGGCACAGGCCAATTGGCATTGGTGTTCAAGGGTTGGCAGATACTTTCATATTACTTGGCATGCCATTTGATTCACCAGAGGCTCAGCAATTGAATAAGGATATCTTCGAAACTATTTACTTTCATTCTCTGAAAGCTTCCGCTGAGCTTGCTGGTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGGGCATTCTCCAACCTGATATGTGGAATGTAGTTCCATCTGACAGATGGAACTGGCCATCTCTACGGAGTACTATTTCTAAAGTTGGATTAAGAAACTCTCTTCTTGTTGCTCCAATGCCTACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAATGCTTTGAACCTTATACATCTAACATATACAGCCGGCGGGTTCTAAGTGGGGAGTTTGTTGTGGTTAACAAGCATCTTCTCCATGATTTGACTGAAATGGGTGTTTGGACTCCAGCTCTGAAAAATAAGATAATTTATGAAGATGGTTCTGTTCAAAAGATGACAGTGATCCCAGATGATCTAAAAGCAATTTACAAAACGGTTTGGGAGATAAAGCAGAAAACGCTTGTTGACATGGCTGTTGATCGTGGATGCTACATTGATCAGAGCCAGAGTCTTAATGTTCACATGGAACAACCAAACTTTGGGAAGCTGACTTCTCTGCATTTCCATGCTTGGTCCAAGGGCCTGAAAACTGGGATGTATTATCTACGAACACGAGCAGCTGCTGACGCAATCAAGTTCACAGTTGATACTGCCCTTTTGAAGGCCAATGGAGAAAACGGCACCAAGGCTGCAGAGGAAGAGGACGTGGAAGCTAAAATGGCTCAAATGGTTTGTTCCTTGAACAACCGGGAGGA-GTGCTTGGCGTGTGGAAGTTAGATGCTTCACTACACAGTTAAAATCTATTTTTAACCAAGACGACACCATTATACAACTGGC-TGATCATTTGGTCTCAATAAC-TGAAAA-GGGAGCCCTTCGTGTAG-TTTGTATGAGCTGATTTCCATACTGGGGGGTAGTGGGGCTCCCCTGTCTGCTGAATTTCATCTTTGGCTTGTACTGTAACATCAAAATTCTTGGGTTACTGCAAATGTACATATGTGTTACTGTTAACGTTATTGACGTGTGGTGTTGCCATGTTGGCAATGGTACTTTGGGTTTGGGAGTCTCATGGTTTTGTATTTGCTTTTGCGTTATCATTTTTTGATGTGGTACGAGTGGCACATCTTTGGCTGTGTGATATTTTCAATTTGTTACTGTAATGGAATTTATCAGGAGCTGTAAAAA]

[+] EMBL AK068858             [AACTTGCTCCAAATCGAAGTATTATTTTCTCTCGCGATTTCTCCGATTTTTTTTTCTAGCGATAAATTAATTAATGCTCCTCTCGCCGCGCCGGGAAAGCATTTAAATCTCCCCCTCCTCCGCGCGGTTCTCCCAACCCAAACCCTACCACGATTCCTCCCCACTCCCAATCCAATCGCCGCGGCGGAGGCGGCGGGCGCGCGTGCACACCAGGTGTTCGACGGAAGGCCTCGCCGGGTGGGGGGCGAAGATGTACGTGGTGAAGCGGGACGGGCGGCAGGAGACGGTGCACTTCGACAAGATCACGGCGCGGCTGAAGAAGCTCAGCTACGGCCTCAGCCAGGAGCACTGCGACCCGGTGCTCGTCGCGCAGAAGGTATGCGCGGGTGTGTACAAGGGCGTCACCACCAGCCAGCTCGACGAGCTCGCTGCCGAGACTGCCGCCGCCATGACCGCGTCCCACCCCGACTACGCCTCGCTCGCGGCGAGGATTGCGGTTTCCAACCTGCACAAGAACACCAAGAAGTCCTTCTCGGAGACGATTAAGGACATGTATGGACATTTCAACGAGAGATCTGGGCTGAATGCTCCTTTGGTTGCCCACGATGTATATGAAGTCATCATGAAGAATGCTTCTCGCTTGGACAGCGAGATAATTTATGATAGGGACTTCGATTATGATTATTTTGGTTTCAAGACTCTGGAGAGGTCTTACCTCCTGAAACTTGGCGGGAAGGTTGTTGAAAGGCCGCAACACATGTTAATGAGAGTTTCAGTAGGTATACACAAGGATGACATTGAGTCTGCTATCAAGACCTACCATCTGATGTCTCAGCGCTGGTTTACTCATGCTTCACCGACCCTTTTCAATGCTGGCACTACAAGGCCCCAATTAAGCAGCTGTTTCCTTATCTGCATGAAAGATGACAGCATTGAGGGAATCTATGATACTTTGAAGGAATGTGCTGTCATAAGCAAATCTGCTGGAGGAATTGGTGTATCAGTTCACAATATTCGAGCTACTGGGAGCTATATCCGTGGAACAAATGGAACCTCCAATGGGATTGTTCCTATGCTACGTGTTTTCAATGATACTGCCCGTTATGTTGATCAAGGTGGAGGCAAGAGAAAGGGTGCATTTGCTGTGTACTTGGAGCCTTGGCATGCGGATATTTTTGAGTTCCTTGATCTGAGAAAGAATCATGGGAAGGAGGAGCATCGTGCAAGGGATCTTTTCTATGCACTCTGGGTTCCTGATCTATTCATGCAAAGAGTCCAAAATAACCAAGAATGGTCATTGTTTTGTCCCAATGAAGCTCCAGGGTTAGCTGATTGCTGGGGTGATGAGTTTGAGAAACTGTACACAAAATATGAGAGAGAGGGCAAGGCAAAGAAAATTGTCCCAGCTCAGACCCTCTGGTTTGACATTTTAAAGGCACAGATAGAAACTGGTACACCATATATGCTTTACAAGGATACATGCAATAGGAAAAGTAACCAGCAGAATTTGGGCACAATTAAATCTTCAAACTTATGCACTGAGATAATTGAGTACACAAGCCCTACTGAAACTGCTGTCTGCAATCTGGCATCTATTGCTTTACCACGTTTTGTAAGGGAAAAGGGTGTCCCCATAGAGTCCCATCCATCTAAACTTGTCGGGAGCAGTGATTCTAAAAATAGATATTTTGACTTTGACAAGCTTGCTGAGGTTACTTCAACTGTCACATACAATCTCAACAAAATAATTGATATTAATTATTACCCTGTTGAAACCGCAAAAAGATCAAATATGCGGCACAGGCCAATTGGCATTGGTGTTCAAGGGTTGGCAGATACTTTCATATTACTTGGCATGCCATTTGATTCACCAGAGGCTCAGCAATTGAATAAGGATATCTTCGAAACTATTTACTTTCATTCTCTGAAAGCTTCCGCTGAGCTTGCTGGTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGGGCATTCTCCAACCTGATATGTGGAATGTAGTTCCATCTGACAGATGGAACTGGCCATCTCTACGGAGTACTATTTCTAAAGTTGGATTAAGAAACTCTCTTCTTGTTGCTCCAATGCCTACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAATGCTTTGAACCTTATACATCTAACATATACAGCCGGCGGGTTCTAAGTGGGGAGTTTGTTGTGGTTAACAAGCATCTTCTCCATGATTTGACTGAAATGGGTGTTTGGACTCCAGCTCTGAAAAATAAGATAATTTATGAAGATGGTTCTGTTCAAAAGATGACAGTGATCCCAGATGATCTAAAAGCAATTTACAAAACGGTTTGGGAGATAAAGCAGAAAACGCTTGTTGACATGGCTGTTGATCGTGGATGCTACATTGATCAGAGCCAGAGTCTTAATGTTCACATGGAACAACCAAACTTTGGGAAGCTGACTTCTCTGCATTTCCATGCTTGGTCCAAGGGCCTGAAAACTGGGATGTATTATCTACGAACACGAGCAGCTGCTGACGCAATCAAGTTCACAGTTGATACTGCCCTTTTGAAGGCCAATGGAGAAAACGGCACCAAGGCTGCAGAGGAAGAGGACGTGGAAGCTAAAATGGCTCAAATGGTTTGTTCCTTGAACAACCGGGAGGA GTGCTTGGCGTGTGGAAGTTAGATGCTTCACTACACAGTTAAAATCTATTTTTAACCAAGACGACACCATTATACAACTGGC TGATCATTTGGTCTCAATAAC TGAAAA GGGAGCCCTTCGTGTAG TTTGTATGAGCTGATTTCCATACTGGGGGGTAGTGGGGCTCCCCTGTCTGCTGAATTTCATCTTTGGCTTGTACTGTAACATCAAAATTCTTGGGTTACTGCAAATGTACATATGTGTTACTGTTAACGTTATTGACGTGTGGTGTTGCCATGTTGGCAATGGTACTTTGGGTTTGGGAGTCTCATGGTTTTGTATTTGCTTTTGCGTTATCATTTTTTGATGTGGTACGAGTGGCACATCTTTGGCTGTGTGATATTTTCAATTTGTTACTGTAATGGAATTTAT               ]
[+] EMBL AU058088             [                                        cnCCGATTTTTTTTTCTAGCGATAAATTAATTAATGCTCCTCTCGCCGCGCCGGGAAAGCATTTAAATCTCCCCCTCCTCCGCGCGGTTCTCCCAACCCAAACCCTACCACGATTCCTCCCCACTCCCAATCCAATCGNCGNGGCGGAGGCGGCGGGCGCGCGTGCACACCAGGTGTTCGACGGAAGGCCTCGNCGGGTGGGGGGCGAAGATNTACGTGGTGAAGCGGGACGGGCGGCANGAGACGGTGCANTTCGACAAGATCACGNCGng                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL C27722               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AACTTTGGGAAGCTGACTTCTCTGCATTTCCATGCTTGGTCCAAGGGCCTGAAAACTGGGATGTATTATCTACGAACACGAGCAGCTGCTGACGCAATCAAGTTCACAGTTGATACTGCCCTTTTGAAGGCCAATGGAGAAAACGGCACCAAGGCTGCAGAGGAAGAGGACGTGGAAGCTAAAATGGCTCAAATGGTTTGTTCCTTGAACAACCGGGANGATGTGCTTGGCGTGTGGAAGTTAGATGCTTCACTACACAGTTAAAATCTATTTTTAACCAAGACGACACCATTATACAACTGGCTTAATCAGTTGGTCTCANTAACTTGAAAAGGGGAGCCCTTCGTGTAGTTTTGTATGAGCTGATT                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU092640             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACTTTGGGAAGCTGACTTCTCTGCATTTCCATGCTTGGTCCAAGGGCCTGAAAACTGGGATGTATTATCTACGAACACGAGCAGCT CTGACGCAATCAAGTTCACAGTTGATACTGCCCTTTTGAAGGCCAATGGAGAAAACGGCACCAAGGCTGCAGAGGAAGAGGACGTGGAAGCTAAAATGGCTCAAATGGTTTGTTCCTTGAACAACCGGGAGGA GTGCTTGGCGTGTGGAAGTTAGATGCTTCACTACACAGTTAAAATCTATTTTTAACCAAGACGACACCATTATACAACTGGC TGANCATTTGGTCTCAATAAC TGAAAA GGGAGCCCTTCGTGTAG TTTGTATGAGCTGATTTCCATACTGGGGGGTAGTGGGGCTCCCCTGTCTGCTGAATTTCATCTTTGGCTTGTACTGTAACATCAAAATTCTTGGGTTACTGCAAATGTACATATGTGTTACTGTTAACGTTATTGACGTGTGGTGTTGCCATGTTGGCAATGGTACTTTGGGTTTGGGAGTCTCATGGTTTTGTATTTGCTTTTGCGTTATCATTTTTTGATGTGGTACGAGTGGCACATCTTTGGCTGTGTGATATTTTCAATTTGTTACTGTAATGGAATTTATCAGGAGCTGTAAAAA]




>consensus_8874#0
AACTTGCTCCAAATCGAAGTATTATTTTCTCTCGCGATTTCTCCGATTTTTTTTTCTAGC
GATAAATTAATTAATGCTCCTCTCGCCGCGCCGGGAAAGCATTTAAATCTCCCCCTCCTC
CGCGCGGTTCTCCCAACCCAAACCCTACCACGATTCCTCCCCACTCCCAATCCAATCGCC
GCGGCGGAGGCGGCGGGCGCGCGTGCACACCAGGTGTTCGACGGAAGGCCTCGCCGGGTG
GGGGGCGAAGATGTACGTGGTGAAGCGGGACGGGCGGCAGGAGACGGTGCACTTCGACAA
GATCACGGCGCGGCTGAAGAAGCTCAGCTACGGCCTCAGCCAGGAGCACTGCGACCCGGT
GCTCGTCGCGCAGAAGGTATGCGCGGGTGTGTACAAGGGCGTCACCACCAGCCAGCTCGA
CGAGCTCGCTGCCGAGACTGCCGCCGCCATGACCGCGTCCCACCCCGACTACGCCTCGCT
CGCGGCGAGGATTGCGGTTTCCAACCTGCACAAGAACACCAAGAAGTCCTTCTCGGAGAC
GATTAAGGACATGTATGGACATTTCAACGAGAGATCTGGGCTGAATGCTCCTTTGGTTGC
CCACGATGTATATGAAGTCATCATGAAGAATGCTTCTCGCTTGGACAGCGAGATAATTTA
TGATAGGGACTTCGATTATGATTATTTTGGTTTCAAGACTCTGGAGAGGTCTTACCTCCT
GAAACTTGGCGGGAAGGTTGTTGAAAGGCCGCAACACATGTTAATGAGAGTTTCAGTAGG
TATACACAAGGATGACATTGAGTCTGCTATCAAGACCTACCATCTGATGTCTCAGCGCTG
GTTTACTCATGCTTCACCGACCCTTTTCAATGCTGGCACTACAAGGCCCCAATTAAGCAG
CTGTTTCCTTATCTGCATGAAAGATGACAGCATTGAGGGAATCTATGATACTTTGAAGGA
ATGTGCTGTCATAAGCAAATCTGCTGGAGGAATTGGTGTATCAGTTCACAATATTCGAGC
TACTGGGAGCTATATCCGTGGAACAAATGGAACCTCCAATGGGATTGTTCCTATGCTACG
TGTTTTCAATGATACTGCCCGTTATGTTGATCAAGGTGGAGGCAAGAGAAAGGGTGCATT
TGCTGTGTACTTGGAGCCTTGGCATGCGGATATTTTTGAGTTCCTTGATCTGAGAAAGAA
TCATGGGAAGGAGGAGCATCGTGCAAGGGATCTTTTCTATGCACTCTGGGTTCCTGATCT
ATTCATGCAAAGAGTCCAAAATAACCAAGAATGGTCATTGTTTTGTCCCAATGAAGCTCC
AGGGTTAGCTGATTGCTGGGGTGATGAGTTTGAGAAACTGTACACAAAATATGAGAGAGA
GGGCAAGGCAAAGAAAATTGTCCCAGCTCAGACCCTCTGGTTTGACATTTTAAAGGCACA
GATAGAAACTGGTACACCATATATGCTTTACAAGGATACATGCAATAGGAAAAGTAACCA
GCAGAATTTGGGCACAATTAAATCTTCAAACTTATGCACTGAGATAATTGAGTACACAAG
CCCTACTGAAACTGCTGTCTGCAATCTGGCATCTATTGCTTTACCACGTTTTGTAAGGGA
AAAGGGTGTCCCCATAGAGTCCCATCCATCTAAACTTGTCGGGAGCAGTGATTCTAAAAA
TAGATATTTTGACTTTGACAAGCTTGCTGAGGTTACTTCAACTGTCACATACAATCTCAA
CAAAATAATTGATATTAATTATTACCCTGTTGAAACCGCAAAAAGATCAAATATGCGGCA
CAGGCCAATTGGCATTGGTGTTCAAGGGTTGGCAGATACTTTCATATTACTTGGCATGCC
ATTTGATTCACCAGAGGCTCAGCAATTGAATAAGGATATCTTCGAAACTATTTACTTTCA
TTCTCTGAAAGCTTCCGCTGAGCTTGCTGGTAAAGAAGGTCCCTATGAAACATATGAAGG
GAGCCCTGTCAGCAAGGGCATTCTCCAACCTGATATGTGGAATGTAGTTCCATCTGACAG
ATGGAACTGGCCATCTCTACGGAGTACTATTTCTAAAGTTGGATTAAGAAACTCTCTTCT
TGTTGCTCCAATGCCTACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAATGCTTTGA
ACCTTATACATCTAACATATACAGCCGGCGGGTTCTAAGTGGGGAGTTTGTTGTGGTTAA
CAAGCATCTTCTCCATGATTTGACTGAAATGGGTGTTTGGACTCCAGCTCTGAAAAATAA
GATAATTTATGAAGATGGTTCTGTTCAAAAGATGACAGTGATCCCAGATGATCTAAAAGC
AATTTACAAAACGGTTTGGGAGATAAAGCAGAAAACGCTTGTTGACATGGCTGTTGATCG
TGGATGCTACATTGATCAGAGCCAGAGTCTTAATGTTCACATGGAACAACCAAACTTTGG
GAAGCTGACTTCTCTGCATTTCCATGCTTGGTCCAAGGGCCTGAAAACTGGGATGTATTA
TCTACGAACACGAGCAGCTGCTGACGCAATCAAGTTCACAGTTGATACTGCCCTTTTGAA
GGCCAATGGAGAAAACGGCACCAAGGCTGCAGAGGAAGAGGACGTGGAAGCTAAAATGGC
TCAAATGGTTTGTTCCTTGAACAACCGGGAGGAGTGCTTGGCGTGTGGAAGTTAGATGCT
TCACTACACAGTTAAAATCTATTTTTAACCAAGACGACACCATTATACAACTGGCTGATC
ATTTGGTCTCAATAACTGAAAAGGGAGCCCTTCGTGTAGTTTGTATGAGCTGATTTCCAT
ACTGGGGGGTAGTGGGGCTCCCCTGTCTGCTGAATTTCATCTTTGGCTTGTACTGTAACA
TCAAAATTCTTGGGTTACTGCAAATGTACATATGTGTTACTGTTAACGTTATTGACGTGT
GGTGTTGCCATGTTGGCAATGGTACTTTGGGTTTGGGAGTCTCATGGTTTTGTATTTGCT
TTTGCGTTATCATTTTTTGATGTGGTACGAGTGGCACATCTTTGGCTGTGTGATATTTTC
AATTTGTTACTGTAATGGAATTTATCAGGAGCTGTAAAAA

consensusID : consensus_8874#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 265
fasta sequence

                              [AGNCGGTCTGAATGCNATNGACNTACGNCCTCACCCAGGAGCACTGCNACCCGGTGCTCGTNGCGCAGAAGGTATGCNCGGGTNTNTACAAGGGCGTCACCACCAGCCAGCTCGACGAGCTCGCTGCCGAGACTGCCGCCGCCATGACCGNTTCCCACCCCGACTACGACTCGCTCGCGGCGAGGATTGCGGTTTCCAACCTGCACAAGAACACCGAGAAGCCCTCTATCCATCCATCCANTGTTAGGTGTTCTTCGTCCGTAAT]

[+] EMBL C27938               [AGNCGGTCTGAATGCNATNGACNTACGNCCTCACCCAGGAGCACTGCNACCCGGTGCTCGTNGCGCAGAAGGTATGCNCGGGTNTNTACAAGGGCGTCACCACCAGCCAGCTCGACGAGCTCGCTGCCGAGACTGCCGCCGCCATGACCGNTTCCCACCCCGACTACGACTCGCTCGCGGCGAGGATTGCGGTTTCCAACCTGCACAAGAACACCGAGAAGCCCTCTATCCATCCATCCANTGTTAGGTGTTCTTCGTCCGTAAT]




>consensus_8874#1
AGNCGGTCTGAATGCNATNGACNTACGNCCTCACCCAGGAGCACTGCNACCCGGTGCTCG
TNGCGCAGAAGGTATGCNCGGGTNTNTACAAGGGCGTCACCACCAGCCAGCTCGACGAGC
TCGCTGCCGAGACTGCCGCCGCCATGACCGNTTCCCACCCCGACTACGACTCGCTCGCGG
CGAGGATTGCGGTTTCCAACCTGCACAAGAACACCGAGAAGCCCTCTATCCATCCATCCA
NTGTTAGGTGTTCTTCGTCCGTAAT

consensusID : consensus_8874#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [TTTGAGNCCCCTTGAANCTGNGAAANAANCCATGGGANGNNGGAGCATCGTNCAAAGGGATCTTTTCTATGCACTCTGGGTNCCTGANCTATTCATNCAAAAGAGTCCNAAATAACCAAANATGGNCATTGTTTTGTCCCAATNAAGCNCCAGGGTTAGCTGATTGCTGGGGTGATGAGTTTGAGAAACTGTACACAAAAA]

[+] EMBL AU161522             [TTTGAGNCCCCTTGAANCTGNGAAANAANCCATGGGANGNNGGAGCATCGTNCAAAGGGATCTTTTCTATGCACTCTGGGTNCCTGANCTATTCATNCAAAAGAGTCCNAAATAACCAAANATGGNCATTGTTTTGTCCCAATNAAGCNCCAGGGTTAGCTGATTGCTGGGGTGATGAGTTTGAGAAACTGTACACAAAAA]




>consensus_8874#2
TTTGAGNCCCCTTGAANCTGNGAAANAANCCATGGGANGNNGGAGCATCGTNCAAAGGGA
TCTTTTCTATGCACTCTGGGTNCCTGANCTATTCATNCAAAAGAGTCCNAAATAACCAAA
NATGGNCATTGTTTTGTCCCAATNAAGCNCCAGGGTTAGCTGATTGCTGGGGTGATGAGT
TTGAGAAACTGTACACAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8874#0      AACTTGCTCCAAATCGAAGTATTATTTTCTCTCGCGATTTCTCCGATTTTTTTTTCTAGC 60
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      GATAAATTAATTAATGCTCCTCTCGCCGCGCCGGGAAAGCATTTAAATCTCCCCCTCCTC 120
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      CGCGCGGTTCTCCCAACCCAAACCCTACCACGATTCCTCCCCACTCCCAATCCAATCGCC 180
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      GCGGCGGAGGCGGCGGGCGCGCGTGCACACCAGGTGTTCGACGGAAGGCCTCGCCGGGTG 240
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      GGGGGCGAAGATGTACGTGGTGAAGCGGGACGGGCGGCAGGAGACGGTGCACTTCGACAA 300
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      GATCACGGCGCGGCTGAAGAAGCTCAGCTACGGCCTCAGCCAGGAGCACTGCGACCCGGT 360
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      GCTCGTCGCGCAGAAGGTATGCGCGGGTGTGTACAAGGGCGTCACCACCAGCCAGCTCGA 420
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      CGAGCTCGCTGCCGAGACTGCCGCCGCCATGACCGCGTCCCACCCCGACTACGCCTCGCT 480
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      CGCGGCGAGGATTGCGGTTTCCAACCTGCACAAGAACACCAAGAAGTCCTTCTCGGAGAC 540
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      GATTAAGGACATGTATGGACATTTCAACGAGAGATCTGGGCTGAATGCTCCTTTGGTTGC 600
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      CCACGATGTATATGAAGTCATCATGAAGAATGCTTCTCGCTTGGACAGCGAGATAATTTA 660
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      TGATAGGGACTTCGATTATGATTATTTTGGTTTCAAGACTCTGGAGAGGTCTTACCTCCT 720
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      GAAACTTGGCGGGAAGGTTGTTGAAAGGCCGCAACACATGTTAATGAGAGTTTCAGTAGG 780
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      TATACACAAGGATGACATTGAGTCTGCTATCAAGACCTACCATCTGATGTCTCAGCGCTG 840
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      GTTTACTCATGCTTCACCGACCCTTTTCAATGCTGGCACTACAAGGCCCCAATTAAGCAG 900
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      CTGTTTCCTTATCTGCATGAAAGATGACAGCATTGAGGGAATCTATGATACTTTGAAGGA 960
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      ATGTGCTGTCATAAGCAAATCTGCTGGAGGAATTGGTGTATCAGTTCACAATATTCGAGC 1020
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      TACTGGGAGCTATATCCGTGGAACAAATGGAACCTCCAATGGGATTGTTCCTATGCTACG 1080
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      TGTTTTCAATGATACTGCCCGTTATGTTGATCAAGGTGGAGGCAAGAGAAAGGGTGCATT 1140
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      TGCTGTGTACTTGGAGCCTTGGCATGCGGATATTTTTGAGTTCCTT--GATCTGAGAAAG 1198
consensus_8874#2      ----------------------------------TTTGAGNCCCCTTGAANCTGNGAAAN 26
consensus_8874#1      ----------------------AGNCGGTCTGAATGCNATNGACNTACGNCCTCACCCAG 38
                                                        *   *    * *     **     * 

consensus_8874#0      AATC-ATGGGAAGGAG-GAGCATCGTGCAA-GGGATCTTTTCTATGCACTCT-GGGTTCC 1254
consensus_8874#2      AANCCATGGGANGNNG-GAGCATCGTNCAAAGGGATCTTTTCTATGCACTCT-GGGTNCC 84
consensus_8874#1      GAGCACTGCNACCCGGTGCTCGTNGCGCAGAAGGTATGCNCGGGTNTNTACAAGGGCGTC 98
                       * *  **  *    * *  * * *  **   **          *     *  ***   *

consensus_8874#0      TGATCTATTCATGCAAA-GAGTCCAAAAT--AACCAAGAATGGTCATTGTTTTGTCCCAA 1311
consensus_8874#2      TGANCTATTCATNCAAAAGAGTCCNAAAT--AACCAAANATGGNCATTGTTTTGTCCCAA 142
consensus_8874#1      ACCACCAGCCAGCTCGACGAGCTCGCTGCCGAGACTGCCGCCGCCATGACCGNTTCCCAC 158
                          * *  **     * ***  *       *  *       * ***       ***** 

consensus_8874#0      TGAAGCTCCAGGGTTAGCTGATTGCTGGGGTGATGAGTTTGAGAAACTGTACACAAAATA 1371
consensus_8874#2      TNAAGCNCCAGGGTTAGCTGATTGCTGGGGTGATGAGTTTGAGAAACTGTACACAAAAA- 201
consensus_8874#1      CCCGACTAC--GACTCGCTCGCGGCGAGGATTGCGGTTTCCA--ACCTGCACAAGAACAC 214
                           *  *  *  * ***    **  ** *   *  **  *  * *** ***  **   

consensus_8874#0      TGAGAGAGAGGGCAAGGCAAAGAAAATTGTCCCAGCTCAGACCCTCTGGTTTGACATTTT 1431
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      CGAGAAGCCCTCTATCCATCCATCCANTGTTAGGTGTTCTTCGTCCGTAAT--------- 265
                                                                                  

consensus_8874#0      AAAGGCACAGATAGAAACTGGTACACCATATATGCTTTACAAGGATACATGCAATAGGAA 1491
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      AAGTAACCAGCAGAATTTGGGCACAATTAAATCTTCAAACTTATGCACTGAGATAATTGA 1551
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      GTACACAAGCCCTACTGAAACTGCTGTCTGCAATCTGGCATCTATTGCTTTACCACGTTT 1611
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      TGTAAGGGAAAAGGGTGTCCCCATAGAGTCCCATCCATCTAAACTTGTCGGGAGCAGTGA 1671
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      TTCTAAAAATAGATATTTTGACTTTGACAAGCTTGCTGAGGTTACTTCAACTGTCACATA 1731
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      CAATCTCAACAAAATAATTGATATTAATTATTACCCTGTTGAAACCGCAAAAAGATCAAA 1791
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      TATGCGGCACAGGCCAATTGGCATTGGTGTTCAAGGGTTGGCAGATACTTTCATATTACT 1851
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      TGGCATGCCATTTGATTCACCAGAGGCTCAGCAATTGAATAAGGATATCTTCGAAACTAT 1911
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      TTACTTTCATTCTCTGAAAGCTTCCGCTGAGCTTGCTGGTAAAGAAGGTCCCTATGAAAC 1971
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      ATATGAAGGGAGCCCTGTCAGCAAGGGCATTCTCCAACCTGATATGTGGAATGTAGTTCC 2031
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      ATCTGACAGATGGAACTGGCCATCTCTACGGAGTACTATTTCTAAAGTTGGATTAAGAAA 2091
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      CTCTCTTCTTGTTGCTCCAATGCCTACTGCTTCCACTAGTCAGATTCTTGGCAACAATGA 2151
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      ATGCTTTGAACCTTATACATCTAACATATACAGCCGGCGGGTTCTAAGTGGGGAGTTTGT 2211
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      TGTGGTTAACAAGCATCTTCTCCATGATTTGACTGAAATGGGTGTTTGGACTCCAGCTCT 2271
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      GAAAAATAAGATAATTTATGAAGATGGTTCTGTTCAAAAGATGACAGTGATCCCAGATGA 2331
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      TCTAAAAGCAATTTACAAAACGGTTTGGGAGATAAAGCAGAAAACGCTTGTTGACATGGC 2391
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      TGTTGATCGTGGATGCTACATTGATCAGAGCCAGAGTCTTAATGTTCACATGGAACAACC 2451
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      AAACTTTGGGAAGCTGACTTCTCTGCATTTCCATGCTTGGTCCAAGGGCCTGAAAACTGG 2511
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      GATGTATTATCTACGAACACGAGCAGCTGCTGACGCAATCAAGTTCACAGTTGATACTGC 2571
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      CCTTTTGAAGGCCAATGGAGAAAACGGCACCAAGGCTGCAGAGGAAGAGGACGTGGAAGC 2631
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      TAAAATGGCTCAAATGGTTTGTTCCTTGAACAACCGGGAGGAGTGCTTGGCGTGTGGAAG 2691
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      TTAGATGCTTCACTACACAGTTAAAATCTATTTTTAACCAAGACGACACCATTATACAAC 2751
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      TGGCTGATCATTTGGTCTCAATAACTGAAAAGGGAGCCCTTCGTGTAGTTTGTATGAGCT 2811
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      GATTTCCATACTGGGGGGTAGTGGGGCTCCCCTGTCTGCTGAATTTCATCTTTGGCTTGT 2871
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      ACTGTAACATCAAAATTCTTGGGTTACTGCAAATGTACATATGTGTTACTGTTAACGTTA 2931
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      TTGACGTGTGGTGTTGCCATGTTGGCAATGGTACTTTGGGTTTGGGAGTCTCATGGTTTT 2991
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      GTATTTGCTTTTGCGTTATCATTTTTTGATGTGGTACGAGTGGCACATCTTTGGCTGTGT 3051
consensus_8874#2      ------------------------------------------------------------
consensus_8874#1      ------------------------------------------------------------
                                                                                  

consensus_8874#0      GATATTTTCAATTTGTTACTGTAATGGAATTTATCAGGAGCTGTAAAAA 3100
consensus_8874#2      -------------------------------------------------
consensus_8874#1      -------------------------------------------------