cluster # 8896

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Oryza sativa
cluster # 8896 cluster # 8896 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8896#0 length = 2118 sequences # 3

consensus_8896#1 length = 1822 sequences # 1
consensus_8896#2 length = 722 sequences # 2

consensusID : consensus_8896#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2118
fasta sequence

                              [TAGCCAAATCCTCTCCATCCTCTCTGCGGCCGCCACCATCCCCTCCCGACCTCCTACTCCGGCGCAGGCGCACAGCATCGCAGCTTCGGGATGACCACGACTCGGCTCGACGAAGCCACGATTGCCCCCCATCTGTCCATCTCTTCGATTTGATAATTCCTCATCTGCTTCGAAGTTGATTCGAGTGACGACCAACGACGGTGCAGGTGCGCGGGGCGGTGAGAGGCGGCAGCACCAAGCAGGAAGGCGGAAGGGCCGCCAGCCACCGGACGCAGCTGGAGGGCGGCGCATCCGCGCCAGAGCGAGGGGTGCGCGGCGCCGGCGCTGCAGGCAGTGGGCCAGCAAGCGAAAGCGGTCATGCAGCGCCGGCTCTGCAGGCGGCGGCGGCGGCCAGGGAACGGGAGGCCATCGAAGGCGAGAAGGATCGCGGTATAAACTGCAGCGTCTGCTACTGCAGCAGTCGGCACACATATCATTTTTTGGGACAGCGGCACTGCTCCATCTTGCAGAGAGCAGGTAAATTCTTTCATACTTTCAACTCTTGATCTGACTAGTCCATTGCAGTAATTGATTTGACTAGTCCATTGCAGTAACTATGCCTGCTGATGTTAATGAAATTTGTAAATTGGAACTTTTCAATATGATAACTTTTTAGT-GGAATGTAATATTTAAAAAGAACTGCACCAATTTTATGGTTGATGTAGTGATGCTAATTTACATATACCCAAGAGAAGCGACAAAACTGCTGTTGTTGCAACAGTTGGATTCCTTGAATAAAGAGGTAGATGAATTGTAAGCATCAAGGGAGCAGCAGTCGAAGAAAATTGAAAGTTTGAAGAACTCATCAGAAGAGACCAATTCCCTTCTTCGTCGTTTGATTGGCCATTTGGCCTGAATACTCCATATTTTGCTCTGCCTTAGTAAGGTTTGACTATCTCTTCATGTTGCCTTGCTTATTCATGATGTGATATATGAAATTATGTCTTTCTTTATCCTAACTTACGAACGAGTGTGACAATACTTGTTGTTATGTAAATTGTTTCATCTAGACTTTTGGGATGCTAGCAAAATATTTTATGTAGTCCAAGCCGTGTTACCGTGTATAAGTGATGCATTGCATCTTTTTTTTTCTCACTGCATAAGATTGTAGTACCATGCTATTTATCACCAAATAATTGAAGTATTGTCTATCAGGCGATATTTGTACAGCATGTTGTTGGCTGAATGTTTTTGGAAATCATGGCACTTATATAAAATCTTACATGCTATTGGCTACTATAATAATCATGATTAGTTAGATAAGGTGGATAGCTAAGTTACTTGCTTATGTATCATAGCTAAGTTGTTTCCAGATATTGCATCTGCCCTAATATCATAGGGTAATTTGTTGGTACAAAAACTATGACCACCTAGTTATCATAGTTGACTTGAAAAATCAAAATCTGAAAAATCATAACTTGATAAAAATGTGCCAGTTCCTTTTTACTGTTATTTGATAAATTAGAATATTGCTCATGATCTACTTTGTGCATAAGTTCCTTTGATTTGTTTTACTAGTGTGAGGTGTACCTAAATTCTGTTCTATGCATAATAGCTATTTTTTTTAGATTGAGTTTGGAAGTCTCATGTTTGAGCCACCGAAAGTAGACATGCATTTTTCAGGAGTTGGTAATACGTATGTACCTAGCTAGACTCACTACATTCTATCTAGCCTACTGCTTTTTAACTATATAAACCCTTGTTGTGGTTCTGAGACATGGTGGGTATGCACCTAGCAGTCTAGCACCCATATTTCATTCACATTGGATGGCATTATGGGCAGGAAAACTTTACAGCGATGTTTCAGAAGCAAAACTAAGTATGAAGATGTGCTGCCTGCTGCAATTGATCTTTTCAAGGAGCGCCACTGCAGTAGCAAGACTGATTTTTACTGATGCATCAAAGTTGTTTATTTTGCTATGGTCCGTGTCATGTACATGAGCTTGTTGTGGTCACTTAGTAGTCGGTGAATCTGATTCTATGTATGTTACTGGGTTTGTGTTTTTTTATTGAGAGAATCCCTTATATGCCACTCCAAATTAACCGGTTTCCTTTATGCCACTCCAAATTGGCTCCTCC]

[+] EMBL AK102969             [TAGCCAAATCCTCTCCATCCTCTCTGCGGCCGCCACCATCCCCTCCCGACCTCCTACTCCGGCGCAGGCGCACAGCATCGCAGCTTCGGGATGACCACGACTCGGCTCGACGAAGCCACGATTGCCCCCCATCTGTCCATCTCTTCGATTTGATAATTCCTCATCTGCTTCGAAGTTGATTCGAGTGACGACCAACGACGGTGCAGGTGCGCGGGGCGGTGAGAGGCGGCAGCACCAAGCAGGAAGGCGGAAGGGCCGCCAGCCACCGGACGCAGCTGGAGGGCGGCGCATCCGCGCCAGAGCGAGGGGTGCGCGGCGCCGGCGCTGCAGGCAGTGGGCCAGCAAGCGAAAGCGGTCATGCAGCGCCGGCTCTGCAGGCGGCGGCGGCGGCCAGGGAACGGGAGGCCATCGAAGGCGAGAAGGATCGCGGTATAAACTGCAGCGTCTGCTACTGCAGCAGTCGGCACACATATCATTTTTTGGGACAGCGGCACTGCTCCATCTTGCAGAGAGCAGGTAAATTCTTTCATACTTTCAACTCTTGATCTGACTAGTCCATTGCAGTAATTGATTTGACTAGTCCATTGCAGTAACTATGCCTGCTGATGTTAATGAAATTTGTAAATTGGAACTTTTCAATATGATAACTTTTTAGT GGAATGTAATATTTAAAAAGAACTGCACCAATTTTATGGTTGATGTAGTGATGCTAATTTACATATACCCAAGAGAAGCGACAAAACTGCTGTTGTTGCAACAGTTGGATTCCTTGAATAAAGAGGTAGATGAATTGTAAGCATCAAGGGAGCAGCAGTCGAAGAAAATTGAAAGTTTGAAGAACTCATCAGAAGAGACCAATTCCCTTCTTCGTCGTTTGATTGGCCATTTGGCCTGAATACTCCATATTTTGCTCTGCCTTAGTAAGGTTTGACTATCTCTTCATGTTGCCTTGCTTATTCATGATGTGATATATGAAATTATGTCTTTCTTTATCCTAACTTACGAACGAGTGTGACAATACTTGTTGTTATGTAAATTGTTTCATCTAGACTTTTGGGATGCTAGCAAAATATTTTATGTAGTCCAAGCCGTGTTACCGTGTATAAGTGATGCATTGCATCTTTTTTTTTCTCACTGCATAAGATTGTAGTACCATGCTATTTATCACCAAATAATTGAAGTATTGTCTATCAGGCGATATTTGTACAGCATGTTGTTGGCTGAATGTTTTTGGAAATCATGGCACTTATATAAAATCTTACATGCTATTGGCTACTATAATAATCATGATTAGTTAGATAAGGTGGATAGCTAAGTTACTTGCTTATGTATCATAGCTAAGTTGTTTCCAGATATTGCATCTGCCCTAATATCATAGGGTAATTTGTTGGTACAAAAACTATGACCACCTAGTTATCATAGTTGACTTGAAAAATCAAAATCTGAAAAATCATAACTTGATAAAAATGTGCCAGTTCCTTTTTACTGTTATTTGATAAATTAGAATATTGCTCATGATCTACTTTGTGCATAAGTTCCTTTGATTTGTTTTACTAGTGTGAGGTGTACCTAAATTCTGTTCTATGCATAATAGCTATTTTTTTTAGATTGAGTTTGGAAGTCTCATGTTTGAGCCACCGAAAGTAGACATGCATTTTTCAGGAGTTGGTAATACGTATGTACCTAGCTAGACTCACTACATTCTATCTAGCCTACTGCTTTTTAACTATATAAACCCTTGTTGTGGTTCTGAGACATGGTGGGTATGCACCTAGCAGTCTAGCACCCATATTTCATTCACATTGGATGGCATTATGGGCAGGAAAACTTTACAGCGATGTTTCAGAAGCAAAACTAAGTATGAAGATGTGCTGCCTGCTGCAATTGATCTTTTCAAGGAGCGCCACTGCAGTAGCAAGACTGATTTTTACTGATGCATCAAAGTTGTTTATTTTGCTATGGTCCGTGTCATGTACATGAGCTTGTTGTGGTCACTTAGTAGTCGGTGAATCTGATTCTATGTATGTTACTGGGTTTGTGTTTTTTTATTGAGAGAATCCCTTATATGCCACTCCAAATTAACCGGTTTCCTTTATGCCACTCCAAATTGGCTCCTCC]
[+] EMBL C28313               [                                                                                                                                                                                                                                                                                                                                                                                               atccgcgaCAGGGAACGGGAGGCCATCGAAGGCGAGAAGGATCGCGGTATAAACTGCAGCGTCTGCTACTGCAGCAGTCGGCACACATATCATTTTTTGGGACAGCGGCACTGCTCCATCTTGCAGAGAGCAGGTAAATTCTTTCATACTTTCAACTCTTGATCTGACTAGTCCATTGCAGTAATTGATTTGACTNGTCCATTGCAGTAACTATGCCTGCTGATGTTAATGAAATTTGTAAATTGGAACTTTTCAATATGATAACTTTTTAGTGGGAATGTAATATTTAAAAAGg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB682443             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCAGCATAACTTTACAGCGATGTTTCAGAAGCAAAACTAAGTATGAAGATGTGCTGCCTGCTGCAATTGATCTTTTCAAGGAGCGCCACTGCAGTAGCAAGACTGATTTTTACTGATGCATCAAAGTTGTTTATTTTGCTATGGTCCGTGTCATGTACATGAGCTTGTTGTGGTCACTTAGTAGTCGGTGAATCTGATTCTATGTATGTTACTGGGTTTGTGTTTTTTTATTGAGAGAATCCCTTATATGCCACTCCAAA                                        ]




>consensus_8896#0
TAGCCAAATCCTCTCCATCCTCTCTGCGGCCGCCACCATCCCCTCCCGACCTCCTACTCC
GGCGCAGGCGCACAGCATCGCAGCTTCGGGATGACCACGACTCGGCTCGACGAAGCCACG
ATTGCCCCCCATCTGTCCATCTCTTCGATTTGATAATTCCTCATCTGCTTCGAAGTTGAT
TCGAGTGACGACCAACGACGGTGCAGGTGCGCGGGGCGGTGAGAGGCGGCAGCACCAAGC
AGGAAGGCGGAAGGGCCGCCAGCCACCGGACGCAGCTGGAGGGCGGCGCATCCGCGCCAG
AGCGAGGGGTGCGCGGCGCCGGCGCTGCAGGCAGTGGGCCAGCAAGCGAAAGCGGTCATG
CAGCGCCGGCTCTGCAGGCGGCGGCGGCGGCCAGGGAACGGGAGGCCATCGAAGGCGAGA
AGGATCGCGGTATAAACTGCAGCGTCTGCTACTGCAGCAGTCGGCACACATATCATTTTT
TGGGACAGCGGCACTGCTCCATCTTGCAGAGAGCAGGTAAATTCTTTCATACTTTCAACT
CTTGATCTGACTAGTCCATTGCAGTAATTGATTTGACTAGTCCATTGCAGTAACTATGCC
TGCTGATGTTAATGAAATTTGTAAATTGGAACTTTTCAATATGATAACTTTTTAGTGGAA
TGTAATATTTAAAAAGAACTGCACCAATTTTATGGTTGATGTAGTGATGCTAATTTACAT
ATACCCAAGAGAAGCGACAAAACTGCTGTTGTTGCAACAGTTGGATTCCTTGAATAAAGA
GGTAGATGAATTGTAAGCATCAAGGGAGCAGCAGTCGAAGAAAATTGAAAGTTTGAAGAA
CTCATCAGAAGAGACCAATTCCCTTCTTCGTCGTTTGATTGGCCATTTGGCCTGAATACT
CCATATTTTGCTCTGCCTTAGTAAGGTTTGACTATCTCTTCATGTTGCCTTGCTTATTCA
TGATGTGATATATGAAATTATGTCTTTCTTTATCCTAACTTACGAACGAGTGTGACAATA
CTTGTTGTTATGTAAATTGTTTCATCTAGACTTTTGGGATGCTAGCAAAATATTTTATGT
AGTCCAAGCCGTGTTACCGTGTATAAGTGATGCATTGCATCTTTTTTTTTCTCACTGCAT
AAGATTGTAGTACCATGCTATTTATCACCAAATAATTGAAGTATTGTCTATCAGGCGATA
TTTGTACAGCATGTTGTTGGCTGAATGTTTTTGGAAATCATGGCACTTATATAAAATCTT
ACATGCTATTGGCTACTATAATAATCATGATTAGTTAGATAAGGTGGATAGCTAAGTTAC
TTGCTTATGTATCATAGCTAAGTTGTTTCCAGATATTGCATCTGCCCTAATATCATAGGG
TAATTTGTTGGTACAAAAACTATGACCACCTAGTTATCATAGTTGACTTGAAAAATCAAA
ATCTGAAAAATCATAACTTGATAAAAATGTGCCAGTTCCTTTTTACTGTTATTTGATAAA
TTAGAATATTGCTCATGATCTACTTTGTGCATAAGTTCCTTTGATTTGTTTTACTAGTGT
GAGGTGTACCTAAATTCTGTTCTATGCATAATAGCTATTTTTTTTAGATTGAGTTTGGAA
GTCTCATGTTTGAGCCACCGAAAGTAGACATGCATTTTTCAGGAGTTGGTAATACGTATG
TACCTAGCTAGACTCACTACATTCTATCTAGCCTACTGCTTTTTAACTATATAAACCCTT
GTTGTGGTTCTGAGACATGGTGGGTATGCACCTAGCAGTCTAGCACCCATATTTCATTCA
CATTGGATGGCATTATGGGCAGGAAAACTTTACAGCGATGTTTCAGAAGCAAAACTAAGT
ATGAAGATGTGCTGCCTGCTGCAATTGATCTTTTCAAGGAGCGCCACTGCAGTAGCAAGA
CTGATTTTTACTGATGCATCAAAGTTGTTTATTTTGCTATGGTCCGTGTCATGTACATGA
GCTTGTTGTGGTCACTTAGTAGTCGGTGAATCTGATTCTATGTATGTTACTGGGTTTGTG
TTTTTTTATTGAGAGAATCCCTTATATGCCACTCCAAATTAACCGGTTTCCTTTATGCCA
CTCCAAATTGGCTCCTCC

consensusID : consensus_8896#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1822
fasta sequence

                              [TCCTCTCCATCCTCTCTGCGGCCGCCACCATCCCCTCCCGACCTCCTACTCCGGCGCAGGCGCACAGCATCGCAGCTTCGGGATGACCACGACTCGGCTCGACGAAGCCACGATTGCCCCCCATCTGTCCATCTCTTCGATTTGATAATTCCTCATCTGCTTCGAAGTTGATTCGAGTGACGACCAACGACGGTGCAGGTGCGCGGGGCGGTGAGAGGCGGCAGCACCAAGCAGGAAGGCGGAAGGGCCGCCAGCCACCGGACGCAGCTGGAGGGCGGCGCATCCGCGCCAGAGCGAGGGGTGCGCGGCGCCGGCGCTGCAGGCAGTGGGCCAGCAAGCGAAAGCGGTCATGCAGCGCCGGCTCTGCAGGTGGCGGCGGCGGCCAGGGAACGGGAGGCCATCGAAGGCGAGAAGGATCGCGGTATAAACTGCAGCGTCTGCTACTGCAGCAGTCGGCACACATATCATTTTTTGGGACAGCGGCACTGCTCCATCTTGCAGAGAGCAGTGATGCTAATTTACATATACCCAAGAGAAGCGACAAAACTGCTGTTGTTGCAACAGTTGGATTCCTTGAATAAAGAGGTAGATGAATTGTAAGCATCAAGGGAGCAGCAGTCGAAGAAAATTGAAAGTTTGAAGAACTCATCAGAAGAGACCAATTCCCTTCTTCGTCGTTTGATTGGCCATTTGGCCTGAATACTCCATATTTTGCTCTGCCTTAGTAAGGTTTGACTATCTCTTCATGTTGCCTTGCTTATTCATGATGTGATATATGAAATTATGTCTTTCTTTATCCTAACTTACGAACGAGTGTGACAATACTTGTTGTTATGTAAATTGTTTCATCTAGACTTTTGGGATGCTAGCAAAATATTTTATGTAGTCCAAGCCGTGTTACCGTGTATAAGTGATGCATTGCATCTTTTTTTTTCTCACTGCATAAGATTGTAGTACCATGCTATTTATCACCAAATAATTGAAGTATTGTCTATCAGGCGATATTTGTACAGCATGTTGTTGGCTGAATGTTTTTGGAAATCATGGCACTTATATAAAATCTTACATGCTATTGGCTACTATAATAATCATGATTAGTTAGATAAGGTGGATAGCTAAGTTACTTGCTTATGTATCATAGCTAAGTTGTTTCCAGATATTGCATCTGCCCTAATATCATAGGGTAATTTGTTGGTACAAAAACTATGACCACCTAGTTATCATAGTTGACTTGAAAAATCAAAATCTGAAAAATCATAACTTGATAAAAATGTGCCAGTTCCTTTTTACTGTTATTTGATAAATTAGAATATTGCTCATGATCTACTTTGTGCATAAGTTCCTTTGATTTGTTTTACTAGTGTGAGGTGTACCTAAATTCTGTTCTATGCATAATAGCTATTTTTTTTAGATTGAGTTTGGAAGTCTCATGTTTGAGCCACCGAAAGTAGACATGCATTTTTCAGGAGTTGGTAATACGTATGTACCTAGCTAGACTCACTACATTCTATCTAGCCTACTGCTTTTTAACTATATAAACCCTTGTTGTGGTTCTGAGACATGGTGGGTATGCACCTAGCAGTCTAGCACCCATATTTCATTCACATTGGATGGCATTATGGGCAGGAAAACTTTACAGCGATGTTTCAGAAGCAAAACTAAGTATGAAGATGTGCTGCCTGCTGCAATTGATCTTTTCAAGGAGCGCCACTGCAGTAGCAAGACTGATTTTTACTGATGCATCAAAGTTGTTTATTTTGCTATGGTCCGTGTCATGTACATGAGCTTGTTGTGGTCACTTAGTAGTCGGTGAATCTGATTC]

[+] EMBL AK107466             [TCCTCTCCATCCTCTCTGCGGCCGCCACCATCCCCTCCCGACCTCCTACTCCGGCGCAGGCGCACAGCATCGCAGCTTCGGGATGACCACGACTCGGCTCGACGAAGCCACGATTGCCCCCCATCTGTCCATCTCTTCGATTTGATAATTCCTCATCTGCTTCGAAGTTGATTCGAGTGACGACCAACGACGGTGCAGGTGCGCGGGGCGGTGAGAGGCGGCAGCACCAAGCAGGAAGGCGGAAGGGCCGCCAGCCACCGGACGCAGCTGGAGGGCGGCGCATCCGCGCCAGAGCGAGGGGTGCGCGGCGCCGGCGCTGCAGGCAGTGGGCCAGCAAGCGAAAGCGGTCATGCAGCGCCGGCTCTGCAGGTGGCGGCGGCGGCCAGGGAACGGGAGGCCATCGAAGGCGAGAAGGATCGCGGTATAAACTGCAGCGTCTGCTACTGCAGCAGTCGGCACACATATCATTTTTTGGGACAGCGGCACTGCTCCATCTTGCAGAGAGCAGTGATGCTAATTTACATATACCCAAGAGAAGCGACAAAACTGCTGTTGTTGCAACAGTTGGATTCCTTGAATAAAGAGGTAGATGAATTGTAAGCATCAAGGGAGCAGCAGTCGAAGAAAATTGAAAGTTTGAAGAACTCATCAGAAGAGACCAATTCCCTTCTTCGTCGTTTGATTGGCCATTTGGCCTGAATACTCCATATTTTGCTCTGCCTTAGTAAGGTTTGACTATCTCTTCATGTTGCCTTGCTTATTCATGATGTGATATATGAAATTATGTCTTTCTTTATCCTAACTTACGAACGAGTGTGACAATACTTGTTGTTATGTAAATTGTTTCATCTAGACTTTTGGGATGCTAGCAAAATATTTTATGTAGTCCAAGCCGTGTTACCGTGTATAAGTGATGCATTGCATCTTTTTTTTTCTCACTGCATAAGATTGTAGTACCATGCTATTTATCACCAAATAATTGAAGTATTGTCTATCAGGCGATATTTGTACAGCATGTTGTTGGCTGAATGTTTTTGGAAATCATGGCACTTATATAAAATCTTACATGCTATTGGCTACTATAATAATCATGATTAGTTAGATAAGGTGGATAGCTAAGTTACTTGCTTATGTATCATAGCTAAGTTGTTTCCAGATATTGCATCTGCCCTAATATCATAGGGTAATTTGTTGGTACAAAAACTATGACCACCTAGTTATCATAGTTGACTTGAAAAATCAAAATCTGAAAAATCATAACTTGATAAAAATGTGCCAGTTCCTTTTTACTGTTATTTGATAAATTAGAATATTGCTCATGATCTACTTTGTGCATAAGTTCCTTTGATTTGTTTTACTAGTGTGAGGTGTACCTAAATTCTGTTCTATGCATAATAGCTATTTTTTTTAGATTGAGTTTGGAAGTCTCATGTTTGAGCCACCGAAAGTAGACATGCATTTTTCAGGAGTTGGTAATACGTATGTACCTAGCTAGACTCACTACATTCTATCTAGCCTACTGCTTTTTAACTATATAAACCCTTGTTGTGGTTCTGAGACATGGTGGGTATGCACCTAGCAGTCTAGCACCCATATTTCATTCACATTGGATGGCATTATGGGCAGGAAAACTTTACAGCGATGTTTCAGAAGCAAAACTAAGTATGAAGATGTGCTGCCTGCTGCAATTGATCTTTTCAAGGAGCGCCACTGCAGTAGCAAGACTGATTTTTACTGATGCATCAAAGTTGTTTATTTTGCTATGGTCCGTGTCATGTACATGAGCTTGTTGTGGTCACTTAGTAGTCGGTGAATCTGATTC]




>consensus_8896#1
TCCTCTCCATCCTCTCTGCGGCCGCCACCATCCCCTCCCGACCTCCTACTCCGGCGCAGG
CGCACAGCATCGCAGCTTCGGGATGACCACGACTCGGCTCGACGAAGCCACGATTGCCCC
CCATCTGTCCATCTCTTCGATTTGATAATTCCTCATCTGCTTCGAAGTTGATTCGAGTGA
CGACCAACGACGGTGCAGGTGCGCGGGGCGGTGAGAGGCGGCAGCACCAAGCAGGAAGGC
GGAAGGGCCGCCAGCCACCGGACGCAGCTGGAGGGCGGCGCATCCGCGCCAGAGCGAGGG
GTGCGCGGCGCCGGCGCTGCAGGCAGTGGGCCAGCAAGCGAAAGCGGTCATGCAGCGCCG
GCTCTGCAGGTGGCGGCGGCGGCCAGGGAACGGGAGGCCATCGAAGGCGAGAAGGATCGC
GGTATAAACTGCAGCGTCTGCTACTGCAGCAGTCGGCACACATATCATTTTTTGGGACAG
CGGCACTGCTCCATCTTGCAGAGAGCAGTGATGCTAATTTACATATACCCAAGAGAAGCG
ACAAAACTGCTGTTGTTGCAACAGTTGGATTCCTTGAATAAAGAGGTAGATGAATTGTAA
GCATCAAGGGAGCAGCAGTCGAAGAAAATTGAAAGTTTGAAGAACTCATCAGAAGAGACC
AATTCCCTTCTTCGTCGTTTGATTGGCCATTTGGCCTGAATACTCCATATTTTGCTCTGC
CTTAGTAAGGTTTGACTATCTCTTCATGTTGCCTTGCTTATTCATGATGTGATATATGAA
ATTATGTCTTTCTTTATCCTAACTTACGAACGAGTGTGACAATACTTGTTGTTATGTAAA
TTGTTTCATCTAGACTTTTGGGATGCTAGCAAAATATTTTATGTAGTCCAAGCCGTGTTA
CCGTGTATAAGTGATGCATTGCATCTTTTTTTTTCTCACTGCATAAGATTGTAGTACCAT
GCTATTTATCACCAAATAATTGAAGTATTGTCTATCAGGCGATATTTGTACAGCATGTTG
TTGGCTGAATGTTTTTGGAAATCATGGCACTTATATAAAATCTTACATGCTATTGGCTAC
TATAATAATCATGATTAGTTAGATAAGGTGGATAGCTAAGTTACTTGCTTATGTATCATA
GCTAAGTTGTTTCCAGATATTGCATCTGCCCTAATATCATAGGGTAATTTGTTGGTACAA
AAACTATGACCACCTAGTTATCATAGTTGACTTGAAAAATCAAAATCTGAAAAATCATAA
CTTGATAAAAATGTGCCAGTTCCTTTTTACTGTTATTTGATAAATTAGAATATTGCTCAT
GATCTACTTTGTGCATAAGTTCCTTTGATTTGTTTTACTAGTGTGAGGTGTACCTAAATT
CTGTTCTATGCATAATAGCTATTTTTTTTAGATTGAGTTTGGAAGTCTCATGTTTGAGCC
ACCGAAAGTAGACATGCATTTTTCAGGAGTTGGTAATACGTATGTACCTAGCTAGACTCA
CTACATTCTATCTAGCCTACTGCTTTTTAACTATATAAACCCTTGTTGTGGTTCTGAGAC
ATGGTGGGTATGCACCTAGCAGTCTAGCACCCATATTTCATTCACATTGGATGGCATTAT
GGGCAGGAAAACTTTACAGCGATGTTTCAGAAGCAAAACTAAGTATGAAGATGTGCTGCC
TGCTGCAATTGATCTTTTCAAGGAGCGCCACTGCAGTAGCAAGACTGATTTTTACTGATG
CATCAAAGTTGTTTATTTTGCTATGGTCCGTGTCATGTACATGAGCTTGTTGTGGTCACT
TAGTAGTCGGTGAATCTGATTC

consensusID : consensus_8896#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 722
fasta sequence

                              [TAAATTAGAATATTGCTCATGATCTACTTTGTGCATAAGTTCCTTTGATTTGTTTTACTAGTGTGAGGTGTACCTAAATTCTGTTCTATGCATAATAGCTATTTTTTTAGATTGAGTTTGGAAGTCTCATGCTTGAGCCACTGAAAGTAGACATGCATTTTTCAGGAGTTGGTAATACGTATGTACCTAGCTAGACTCACTACATTCTATCTAGCCTACTGCTTTTTAACTATATAAACCCTTGTTGTGGTTCTGAGACATGGTGGGTATGCACCTACCTGTCTAGCACCCATATTTCATTCACATTGGATGGCATTATGGGTAGGAAAACTTTACAGCGATGGTATGTTGTATCTAGCACTTCAATTATGCATATGAAAAAACTTTCAGAGAGCGATGTCATATTGAATTTACAAATTGTTTGCATGCAGTTTCAGAAGCAAAACTAAGTATGAAGATGTGCTGCCTGCTGCAATTGATCTTTTCAAGGAGCGCCACTGCAGTAGCAAGACTGATTTTTACTGATGCATCAAAGTTGTTTATTTTGCTATGGTCCGTGTCATGTACATGAGCTTGTTGTGGTCACTTAGTAGTCGGTGAATCTGATTCTATGTATGTTACTGGGTTTGTGTTTTTTTATTGAGAGAATCCCTTATATGCCA----AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA759168             [TAAATTAGAATATTGCTCATGATCTACTTTGTGCATAAGTTCCTTTGATTTGTTTTACTAGTGTGAGGTGTACCTAAATTCTGTTCTATGCATAATAGCTATTTTTTTAGATTGAGTTTGGAAGTCTCATGCTTGAGCCACTGAAAGTAGACATGCATTTTTCAGGAGTTGGTAATACGTATGTACCTAGCTAGACTCACTACATTCTATCTAGCCTACTGCTTTTTAACTATATAAACCCTTGTTGTGGTTCTGAGACATGGTGGGTATGCACCTACCTGTCTAGCACCCATATTTCATTCACATTGGATGGCATTATGGGTAGGAAAACTTTACAGCGATGGTATGTTGTATCTAGCACTTCAATTATGCATATGAAAAAACTTTCAGAGAGCGATGTCATATTGAATTTACAAATTGTTTGCATGCAGTTTCAGAAGCAAAACTAAGTATGAAGATGTGCTGCCTGCTGCAATTGATCTTTTCAAGGAGCGCCACTGCAGTAGCAAGACTGATTTTTACTGATGCATCAAAGTTGTTTATTTTGCTATGGTCCGTGTCATGTACATGAGCTTGTTGTGGTCACTTAGTAGTCGGTGAATCTGATTCTATGTATGTTACTGGGTTTGTGTTTTTTTATTGAGAGAATCCCTTATATGCCA    AAAAAAAAAAAAAA                                              ]
[+] EMBL AU092873             [                                                                                                                                                                                                                                                                                                         CATTCNCATTGGATGGCATTNTGGGCAGGAAAACTTTACAGCGATGGTATGTTGTATCTAGCACTTCAATTATGCATNTGAAAAAACTTTCAGAGAGCGATGTCATATTGAATTTACAAATTGTTTGCATGCAGTTTCAGAAGCAAAACTAAGTATGAAGATGTGCTGCCTGCTGCAATTGATCTTTTCAAGGNGCGCCACTGCAGTAGCAAGACTGATTTTTACTGATGCATCAAAGTTGTTTATTTTGCTATGGTCCGTGTCATGTACATGAGCTTGTTGTGGTCACTTAGTAGTCGGTGAATCTGATTCTATGTATGTTACTGGGTTTGTGTTTTTTTATTGAGNGAATCCCTTATATGCCACTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8896#2
TAAATTAGAATATTGCTCATGATCTACTTTGTGCATAAGTTCCTTTGATTTGTTTTACTA
GTGTGAGGTGTACCTAAATTCTGTTCTATGCATAATAGCTATTTTTTTAGATTGAGTTTG
GAAGTCTCATGCTTGAGCCACTGAAAGTAGACATGCATTTTTCAGGAGTTGGTAATACGT
ATGTACCTAGCTAGACTCACTACATTCTATCTAGCCTACTGCTTTTTAACTATATAAACC
CTTGTTGTGGTTCTGAGACATGGTGGGTATGCACCTACCTGTCTAGCACCCATATTTCAT
TCACATTGGATGGCATTATGGGTAGGAAAACTTTACAGCGATGGTATGTTGTATCTAGCA
CTTCAATTATGCATATGAAAAAACTTTCAGAGAGCGATGTCATATTGAATTTACAAATTG
TTTGCATGCAGTTTCAGAAGCAAAACTAAGTATGAAGATGTGCTGCCTGCTGCAATTGAT
CTTTTCAAGGAGCGCCACTGCAGTAGCAAGACTGATTTTTACTGATGCATCAAAGTTGTT
TATTTTGCTATGGTCCGTGTCATGTACATGAGCTTGTTGTGGTCACTTAGTAGTCGGTGA
ATCTGATTCTATGTATGTTACTGGGTTTGTGTTTTTTTATTGAGAGAATCCCTTATATGC
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8896#0      TAGCCAAATCCTCTCCATCCTCTCTGCGGCCGCCACCATCCCCTCCCGACCTCCTACTCC 60
consensus_8896#1      --------TCCTCTCCATCCTCTCTGCGGCCGCCACCATCCCCTCCCGACCTCCTACTCC 52
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      GGCGCAGGCGCACAGCATCGCAGCTTCGGGATGACCACGACTCGGCTCGACGAAGCCACG 120
consensus_8896#1      GGCGCAGGCGCACAGCATCGCAGCTTCGGGATGACCACGACTCGGCTCGACGAAGCCACG 112
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      ATTGCCCCCCATCTGTCCATCTCTTCGATTTGATAATTCCTCATCTGCTTCGAAGTTGAT 180
consensus_8896#1      ATTGCCCCCCATCTGTCCATCTCTTCGATTTGATAATTCCTCATCTGCTTCGAAGTTGAT 172
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      TCGAGTGACGACCAACGACGGTGCAGGTGCGCGGGGCGGTGAGAGGCGGCAGCACCAAGC 240
consensus_8896#1      TCGAGTGACGACCAACGACGGTGCAGGTGCGCGGGGCGGTGAGAGGCGGCAGCACCAAGC 232
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      AGGAAGGCGGAAGGGCCGCCAGCCACCGGACGCAGCTGGAGGGCGGCGCATCCGCGCCAG 300
consensus_8896#1      AGGAAGGCGGAAGGGCCGCCAGCCACCGGACGCAGCTGGAGGGCGGCGCATCCGCGCCAG 292
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      AGCGAGGGGTGCGCGGCGCCGGCGCTGCAGGCAGTGGGCCAGCAAGCGAAAGCGGTCATG 360
consensus_8896#1      AGCGAGGGGTGCGCGGCGCCGGCGCTGCAGGCAGTGGGCCAGCAAGCGAAAGCGGTCATG 352
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      CAGCGCCGGCTCTGCAGGCGGCGGCGGCGGCCAGGGAACGGGAGGCCATCGAAGGCGAGA 420
consensus_8896#1      CAGCGCCGGCTCTGCAGGTGGCGGCGGCGGCCAGGGAACGGGAGGCCATCGAAGGCGAGA 412
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      AGGATCGCGGTATAAACTGCAGCGTCTGCTACTGCAGCAGTCGGCACACATATCATTTTT 480
consensus_8896#1      AGGATCGCGGTATAAACTGCAGCGTCTGCTACTGCAGCAGTCGGCACACATATCATTTTT 472
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      TGGGACAGCGGCACTGCTCCATCTTGCAGAGAGCAGGTAAATTCTTTCATACTTTCAACT 540
consensus_8896#1      TGGGACAGCGGCACTGCTCCATCTTGCAGAGAGCAG------------------------ 508
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      CTTGATCTGACTAGTCCATTGCAGTAATTGATTTGACTAGTCCATTGCAGTAACTATGCC 600
consensus_8896#1      ------------------------------------------------------------
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      TGCTGATGTTAATGAAATTTGTAAATTGGAACTTTTCAATATGATAACTTTTTAGTGGAA 660
consensus_8896#1      ------------------------------------------------------------
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      TGTAATATTTAAAAAGAACTGCACCAATTTTATGGTTGATGTAGTGATGCTAATTTACAT 720
consensus_8896#1      --------------------------------------------TGATGCTAATTTACAT 524
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      ATACCCAAGAGAAGCGACAAAACTGCTGTTGTTGCAACAGTTGGATTCCTTGAATAAAGA 780
consensus_8896#1      ATACCCAAGAGAAGCGACAAAACTGCTGTTGTTGCAACAGTTGGATTCCTTGAATAAAGA 584
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      GGTAGATGAATTGTAAGCATCAAGGGAGCAGCAGTCGAAGAAAATTGAAAGTTTGAAGAA 840
consensus_8896#1      GGTAGATGAATTGTAAGCATCAAGGGAGCAGCAGTCGAAGAAAATTGAAAGTTTGAAGAA 644
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      CTCATCAGAAGAGACCAATTCCCTTCTTCGTCGTTTGATTGGCCATTTGGCCTGAATACT 900
consensus_8896#1      CTCATCAGAAGAGACCAATTCCCTTCTTCGTCGTTTGATTGGCCATTTGGCCTGAATACT 704
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      CCATATTTTGCTCTGCCTTAGTAAGGTTTGACTATCTCTTCATGTTGCCTTGCTTATTCA 960
consensus_8896#1      CCATATTTTGCTCTGCCTTAGTAAGGTTTGACTATCTCTTCATGTTGCCTTGCTTATTCA 764
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      TGATGTGATATATGAAATTATGTCTTTCTTTATCCTAACTTACGAACGAGTGTGACAATA 1020
consensus_8896#1      TGATGTGATATATGAAATTATGTCTTTCTTTATCCTAACTTACGAACGAGTGTGACAATA 824
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      CTTGTTGTTATGTAAATTGTTTCATCTAGACTTTTGGGATGCTAGCAAAATATTTTATGT 1080
consensus_8896#1      CTTGTTGTTATGTAAATTGTTTCATCTAGACTTTTGGGATGCTAGCAAAATATTTTATGT 884
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      AGTCCAAGCCGTGTTACCGTGTATAAGTGATGCATTGCATCTTTTTTTTTCTCACTGCAT 1140
consensus_8896#1      AGTCCAAGCCGTGTTACCGTGTATAAGTGATGCATTGCATCTTTTTTTTTCTCACTGCAT 944
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      AAGATTGTAGTACCATGCTATTTATCACCAAATAATTGAAGTATTGTCTATCAGGCGATA 1200
consensus_8896#1      AAGATTGTAGTACCATGCTATTTATCACCAAATAATTGAAGTATTGTCTATCAGGCGATA 1004
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      TTTGTACAGCATGTTGTTGGCTGAATGTTTTTGGAAATCATGGCACTTATATAAAATCTT 1260
consensus_8896#1      TTTGTACAGCATGTTGTTGGCTGAATGTTTTTGGAAATCATGGCACTTATATAAAATCTT 1064
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      ACATGCTATTGGCTACTATAATAATCATGATTAGTTAGATAAGGTGGATAGCTAAGTTAC 1320
consensus_8896#1      ACATGCTATTGGCTACTATAATAATCATGATTAGTTAGATAAGGTGGATAGCTAAGTTAC 1124
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      TTGCTTATGTATCATAGCTAAGTTGTTTCCAGATATTGCATCTGCCCTAATATCATAGGG 1380
consensus_8896#1      TTGCTTATGTATCATAGCTAAGTTGTTTCCAGATATTGCATCTGCCCTAATATCATAGGG 1184
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      TAATTTGTTGGTACAAAAACTATGACCACCTAGTTATCATAGTTGACTTGAAAAATCAAA 1440
consensus_8896#1      TAATTTGTTGGTACAAAAACTATGACCACCTAGTTATCATAGTTGACTTGAAAAATCAAA 1244
consensus_8896#2      ------------------------------------------------------------
                                                                                  

consensus_8896#0      ATCTGAAAAATCATAACTTGATAAAAATGTGCCAGTTCCTTTTTACTGTTATTTGATAAA 1500
consensus_8896#1      ATCTGAAAAATCATAACTTGATAAAAATGTGCCAGTTCCTTTTTACTGTTATTTGATAAA 1304
consensus_8896#2      --------------------------------------------------------TAAA 4
                                                                              ****

consensus_8896#0      TTAGAATATTGCTCATGATCTACTTTGTGCATAAGTTCCTTTGATTTGTTTTACTAGTGT 1560
consensus_8896#1      TTAGAATATTGCTCATGATCTACTTTGTGCATAAGTTCCTTTGATTTGTTTTACTAGTGT 1364
consensus_8896#2      TTAGAATATTGCTCATGATCTACTTTGTGCATAAGTTCCTTTGATTTGTTTTACTAGTGT 64
                      ************************************************************

consensus_8896#0      GAGGTGTACCTAAATTCTGTTCTATGCATAATAGCTATTTTTTTTAGATTGAGTTTGGAA 1620
consensus_8896#1      GAGGTGTACCTAAATTCTGTTCTATGCATAATAGCTATTTTTTTTAGATTGAGTTTGGAA 1424
consensus_8896#2      GAGGTGTACCTAAATTCTGTTCTATGCATAATAGCTATTTTTTT-AGATTGAGTTTGGAA 123
                      ******************************************** ***************

consensus_8896#0      GTCTCATGTTTGAGCCACCGAAAGTAGACATGCATTTTTCAGGAGTTGGTAATACGTATG 1680
consensus_8896#1      GTCTCATGTTTGAGCCACCGAAAGTAGACATGCATTTTTCAGGAGTTGGTAATACGTATG 1484
consensus_8896#2      GTCTCATGCTTGAGCCACTGAAAGTAGACATGCATTTTTCAGGAGTTGGTAATACGTATG 183
                      ******** ********* *****************************************

consensus_8896#0      TACCTAGCTAGACTCACTACATTCTATCTAGCCTACTGCTTTTTAACTATATAAACCCTT 1740
consensus_8896#1      TACCTAGCTAGACTCACTACATTCTATCTAGCCTACTGCTTTTTAACTATATAAACCCTT 1544
consensus_8896#2      TACCTAGCTAGACTCACTACATTCTATCTAGCCTACTGCTTTTTAACTATATAAACCCTT 243
                      ************************************************************

consensus_8896#0      GTTGTGGTTCTGAGACATGGTGGGTATGCACCTAGCAGTCTAGCACCCATATTTCATTCA 1800
consensus_8896#1      GTTGTGGTTCTGAGACATGGTGGGTATGCACCTAGCAGTCTAGCACCCATATTTCATTCA 1604
consensus_8896#2      GTTGTGGTTCTGAGACATGGTGGGTATGCACCTACCTGTCTAGCACCCATATTTCATTCA 303
                      ********************************** * ***********************

consensus_8896#0      CATTGGATGGCATTATGGGCAGGAAAACTTTACAGCGATG-------------------- 1840
consensus_8896#1      CATTGGATGGCATTATGGGCAGGAAAACTTTACAGCGATG-------------------- 1644
consensus_8896#2      CATTGGATGGCATTATGGGTAGGAAAACTTTACAGCGATGGTATGTTGTATCTAGCACTT 363
                      ******************* ********************                    

consensus_8896#0      ------------------------------------------------------------
consensus_8896#1      ------------------------------------------------------------
consensus_8896#2      CAATTATGCATATGAAAAAACTTTCAGAGAGCGATGTCATATTGAATTTACAAATTGTTT 423
                                                                                  

consensus_8896#0      --------TTTCAGAAGCAAAACTAAGTATGAAGATGTGCTGCCTGCTGCAATTGATCTT 1892
consensus_8896#1      --------TTTCAGAAGCAAAACTAAGTATGAAGATGTGCTGCCTGCTGCAATTGATCTT 1696
consensus_8896#2      GCATGCAGTTTCAGAAGCAAAACTAAGTATGAAGATGTGCTGCCTGCTGCAATTGATCTT 483
                              ****************************************************

consensus_8896#0      TTCAAGGAGCGCCACTGCAGTAGCAAGACTGATTTTTACTGATGCATCAAAGTTGTTTAT 1952
consensus_8896#1      TTCAAGGAGCGCCACTGCAGTAGCAAGACTGATTTTTACTGATGCATCAAAGTTGTTTAT 1756
consensus_8896#2      TTCAAGGAGCGCCACTGCAGTAGCAAGACTGATTTTTACTGATGCATCAAAGTTGTTTAT 543
                      ************************************************************

consensus_8896#0      TTTGCTATGGTCCGTGTCATGTACATGAGCTTGTTGTGGTCACTTAGTAGTCGGTGAATC 2012
consensus_8896#1      TTTGCTATGGTCCGTGTCATGTACATGAGCTTGTTGTGGTCACTTAGTAGTCGGTGAATC 1816
consensus_8896#2      TTTGCTATGGTCCGTGTCATGTACATGAGCTTGTTGTGGTCACTTAGTAGTCGGTGAATC 603
                      ************************************************************

consensus_8896#0      TGATTCTATGTATGTTACTGGGTTTGTGTTTTTTTATTGAGAGAATCCCTTATATGCCAC 2072
consensus_8896#1      TGATTC------------------------------------------------------ 1822
consensus_8896#2      TGATTCTATGTATGTTACTGGGTTTGTGTTTTTTTATTGAGAGAATCCCTTATATGCCAA 663
                      ******                                                      

consensus_8896#0      TCCAAATTAACCGGTTTCCTTTATGCCACTCCAAATTGGCTCCTCC------------- 2118
consensus_8896#1      -----------------------------------------------------------
consensus_8896#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 722