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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8900#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2059 fasta sequence
[CTCTAGGCTCTGCCACCAGTCCGCCCTTCCACTCCTCGTCCTTGCGCTTCTTCGGTTCTTCCTCTCCGAGGTCCGAGCTGCCCAAAAGTTTCATCGATCCGTTCTCTGCCACAGCCGCTGGATTCTAGCTTTCATTTGCTTGCTCTGATCCGTTGGATTGGATTGCCTCGTTTTGAATAGTTCAGAGAAACCTTGCTCTGACGGAGTATTGAGGCTGGCAGCAGGTCCAAGAAATGGGGAGGAAATGGCACCATGTCGCCGCGGCGCTGGCCGTGGCCTGCGCCGCGACGGCGGCCGCCACCGTCGCCGCCGCGGCCGACAGGGGGCTTTGGTCCGCCGCCGCCGCCGCCGTGGCGGAGGAGGGGGAGGAAGCGAGCCACCTGCGCAAGGTGGCCAACTTTTTGTGGCGGAGCGGCGGCGAGAACTCCTACCACCACGTGTGGCCGCCAATGGAATTTGGATGGCAAATTGTGCTGGGGTCATTTGTCGGATTCATTGGAGCGGCGTTTGGGAGTATAGGCGGTGTAGGCGGCGGTGGGTTCTTCATGCCGATGCTGACCTTGATCATTGGGTTCGACGCAAAGTCATCCGTGGCGATATCAAAATGTATGATAATGGGAGCCGCTGTGTCGACTGTGTACTGCAACCTTAAGCGGAAACACCCAACTTTGGACATGCCAGTGATTGACTATGATCTAGCCCTTCTTATCCAGCCGATGCTCATGCTAGGAATTAGTATCGGTGTCATTTTCAATGTGATATTCCCTGATTGGCTGGTCACAGTTCTCTTGATCATCCTTTTCCTAAGCACTTCAACTAAAGCTTTTCTGAAGGGTATCGAGACATGGAAGAAAGAGACAATAATAAAAAGGGAGGCAGAAAAGCGATCAGAGCAGACAAGTGAAGAACTAGAGTATAGACCAGTTCCTGCATCTGAGTCAAAACCCCCTTCAGATGAAGCGGTATCTATTTTGCATAATGTTTACTGGAAGGAATTTGGACTTCTTGCCTTTGTTTGGATAGCATTCCTCGCACTTCAGGTTACTAAGAATTACATGCCAACTTGCTCCACGTGGTACTGGGTTTTGAACTTATTGCAGATCCCAGTGTCAGTTGGGGTGACCATGTATGAAGGACTAGGATTGATGCAGGGGAGGAGGGTCATATCATCAAATGGAAATGAGCAGACCAACCTAAAATTTCACCAGCTACTTATGTACTGCTTTTTTGGAATAACTGCTGGAATTGTTGCCGGTCTGCTTGGTGTTGGGGGCGGCTCAATCCTAGGACCCATGTTCTTGGACCTTGGTGTCCCTCCACAAGTCGCAAGTGCCACTGCCACCTTCTCAATGATGTTCTCGGCTTCCATGTCTGCTGTTGAATACTACTTCTTGGACCGATTCCCTGTGCCATATGCTCTTTACTTGACCGTTGTGGCATTCTTTTCTGCGATTGTCGGCCAGCGAATGGTAAGGAAGGTGATCAATTGGTTAGGGCGTGCATCGATCATTATCTTCACATTGTCCATCATGATCTTCCTCAGTACAATCCCTCTAGGTGGAATCGGTATCGTGAACTGGATTGGCAAGATTGAGCGACATGAGTACATGGGATTCGAAGACATATGCAAGTTTGATGCATAGGAGGAAGGTAAACATGGGCACTATATATACTGTGCAGTTTCAGCCAATGGAACACATATATCATCATATTTGCCTGGTCAGATTGCAGCATGGAGATTGTTTTTTCGCCCTGTAAATTCAAGACAGTTGTATATTGATATTGTCCCTCAATTGATAGTAGCTCGGAGGAGACAAATTTACTGTACTACTCACTCCATCCTATAATATAAGGGATTTTAAATAGATATGACATATCTTAGTACAATAAATCTAAACATCCACCCAAAATCCCTATAGGACGGGACTAGTAGTTTTTTTAGGTGTTCAGACATGTGAACTCTCCTACAGCAAGTAGTAGTACGTCCATAAAGCTGTGAACTGTGAAGAGAGAATNACAAGAGCNGGTCCNNTNTNTTGNTNAAAAAAAAAAAAAAAAA]
[+] EMBL AK120787 [CTCTAGGCTCTGCCACCAGTCCGCCCTTCCACTCCTCGTCCTTGCGCTTCTTCGGTTCTTCCTCTCCGAGGTCCGAGCTGCCCAAAAGTTTCATCGATCCGTTCTCTGCCACAGCCGCTGGATTCTAGCTTTCATTTGCTTGCTCTGATCCGTTGGATTGGATTGCCTCGTTTTGAATAGTTCAGAGAAACCTTGCTCTGACGGAGTATTGAGGCTGGCAGCAGGTCCAAGAAATGGGGAGGAAATGGCACCATGTCGCCGCGGCGCTGGCCGTGGCCTGCGCCGCGACGGCGGCCGCCACCGTCGCCGCCGCGGCCGACAGGGGGCTTTGGTCCGCCGCCGCCGCCGCCGTGGCGGAGGAGGGGGAGGAAGCGAGCCACCTGCGCAAGGTGGCCAACTTTTTGTGGCGGAGCGGCGGCGAGAACTCCTACCACCACGTGTGGCCGCCAATGGAATTTGGATGGCAAATTGTGCTGGGGTCATTTGTCGGATTCATTGGAGCGGCGTTTGGGAGTATAGGCGGTGTAGGCGGCGGTGGGTTCTTCATGCCGATGCTGACCTTGATCATTGGGTTCGACGCAAAGTCATCCGTGGCGATATCAAAATGTATGATAATGGGAGCCGCTGTGTCGACTGTGTACTGCAACCTTAAGCGGAAACACCCAACTTTGGACATGCCAGTGATTGACTATGATCTAGCCCTTCTTATCCAGCCGATGCTCATGCTAGGAATTAGTATCGGTGTCATTTTCAATGTGATATTCCCTGATTGGCTGGTCACAGTTCTCTTGATCATCCTTTTCCTAAGCACTTCAACTAAAGCTTTTCTGAAGGGTATCGAGACATGGAAGAAAGAGACAATAATAAAAAGGGAGGCAGAAAAGCGATCAGAGCAGACAAGTGAAGAACTAGAGTATAGACCAGTTCCTGCATCTGAGTCAAAACCCCCTTCAGATGAAGCGGTATCTATTTTGCATAATGTTTACTGGAAGGAATTTGGACTTCTTGCCTTTGTTTGGATAGCATTCCTCGCACTTCAGGTTACTAAGAATTACATGCCAACTTGCTCCACGTGGTACTGGGTTTTGAACTTATTGCAGATCCCAGTGTCAGTTGGGGTGACCATGTATGAAGGACTAGGATTGATGCAGGGGAGGAGGGTCATATCATCAAATGGAAATGAGCAGACCAACCTAAAATTTCACCAGCTACTTATGTACTGCTTTTTTGGAATAACTGCTGGAATTGTTGCCGGTCTGCTTGGTGTTGGGGGCGGCTCAATCCTAGGACCCATGTTCTTGGACCTTGGTGTCCCTCCACAAGTCGCAAGTGCCACTGCCACCTTCTCAATGATGTTCTCGGCTTCCATGTCTGCTGTTGAATACTACTTCTTGGACCGATTCCCTGTGCCATATGCTCTTTACTTGACCGTTGTGGCATTCTTTTCTGCGATTGTCGGCCAGCGAATGGTAAGGAAGGTGATCAATTGGTTAGGGCGTGCATCGATCATTATCTTCACATTGTCCATCATGATCTTCCTCAGTACAATCCCTCTAGGTGGAATCGGTATCGTGAACTGGATTGGCAAGATTGAGCGACATGAGTACATGGGATTCGAAGACATATGCAAGTTTGATGCATAGGAGGAAGGTAAACATGGGCACTATATATACTGTGCAGTTTCAGCCAATGGAACACATATATCATCATATTTGCCTGGTCAGATTGCAGCATGGAGATTGTTTTTTCGCCCTGTAAATTCAAGACAGTTGTATATTGATATTGTCCCTCAATTGATAGTAGCTCGGAGGAGACAAATTTACTGTACTACTCACTCCATCCTATAATATAAGGGA ]
[+] EMBL CA999075 [ TCCTAGGACCCATGTTCTTGGACCTTGGTGTCCCTCCACAAGTCGCAAGTGCCACTGCCACCTTCTCAATGATGTTCTCGGCTTCCATGTCTGCTGTTGAATACTACTTCTTGGACCGATTCCCTGTGCCATATGCTCTTTACTTGACCGTTGTGGCATTCTTTTCTGCGATTGTCGGCCAGCGAATGGTAAGGAAGGTGATCAATTGGTTAGGGCGTGCATCGATCATTATCTTCACATTGTCCATCATGATCTTCCTCAGTACAATCCCTCTAGGTGGAATCGGTATCGTGAACTGGATTGGCAAGATTGAGCGACATGAGTACATGGGATTCGAAGACATATGCAAGTTTGATGCATAGGAGGAAGGTAAACATGGGCACTATATATACTGTGCAGTTTCAGCCAATGGAACACATATATCATCATATTTGCCTGGTCAGATTGCAGCATGGAGATTGTTTTTTCGCCCTGTAAATTCAAGACAGTTGTATATTGATATTGTCCCTCAATTGATAGTAGCTCGGAGGAGACAAATTTACTGTACTACTCACTCCATCCTATAATATAAGGGATTTTAAATAGATATGACATATCTTAGTACAATAAATCTAAACATCCACCCAAAATCCCTATAGGACGGGACT ]
[+] EMBL CA999024 [ GCTTCCATGTCTGCTGTTGAATACTACTTCTTGGACCGATTCCCTGTGCCATATGCTCTTTACTTGACCGTTGTGGCATTCTTTTCTGCGATTGTCGGCCAGCGAATGGTAAGGAAGGTGATCAATTGGTTAGGGCGTGCATCGATCATTATCTTCACATTGTCCATCATGATCTTCCTCAGTACAATCCCTCTAGGTGGAATCGGTATCGTGAACTGGATTGGCAAGATTGAGCGACATGAGTACATGGGATTCGAAGACATATGCAAGTTTGATGCATAGGAGGAAGGTAAACATGGGCACTATATATACTGTGCAGTTTCAGCCAATGGAACACATATATCATCATATTTGCCTGGTCAGATTGCAGCATGGAGATTGTTTTTTCGCCCTGTAAATTCAAGACAGTTGTATATTGATATTGTCCCTCAATTGATAGTAGCTCGGAGGAGACAAATTTACTGTACTACTCACTCCATCCTATAATATAAGGGATTTTAAATAGATATGACATATCTTAGTACAATAAATCTAAACATCCACCCAAAATCCCTATAGGACGGGACTAGTAGTTTTTTTAGGTGTTCAGACATGTGAA ]
[+] EMBL AU032590 [ TTCAGCCAATGGAACACATATATCATCATATTTGCCTGGTCANATTGCAGCATGGAGANTGTTTTTTCGCCCTGTAAATTCAAGACAGTTGTATATTGATATTGTCCCTCAATTGATNGTNGCNCGGNGGAGANNAATTTACTGTACTACTCACTCCATCCTATAATATAAGGGATTTTAAATAGATATGACATATCTTAGTACAATAAATCTAAACATCCACCCAAAATCCCTATAGGACGGGACTAGTAGTTTTTTTAGGTGTTCAGACATGTGAACTCTCCTACAGCAAGTAGTAGTACGTCCATAAAGCTGTGAACTGTGAAGAGAGAATNACAAGAGCNGGTCCNNTNTNTTGNTNAAAAAAAAAAAAAAAAA]
consensusID : consensus_8900#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 527 fasta sequence
[ACTAGTAGTTTTNTTAGGTGTTCAGACATGTGAACTNTCCTACAGCAAGTAGTAGTACGTCCATAAAGCTGTGAACTGTGAAGAGAGAATAACAAGAGCAGGTCCAGTATATTGTTCATTTTTACTGGTTTCAGTGTAGTGAATTTATATTTGTGCCGGCTAATTTGACCTGAAAATATAAGGGATCGAA-CGTTGCGAATGTGCTTATCTTTGAAATGGAACTTGATTACGATGGTAAAGTGATAGCTGAGCTATGGATTGCTAACAAGAAGGTCGTTGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCCGGTGTCCCGGGTTCGATCCCCGGCAACGGCGTTTCTCATGTTTTTTATTTCCACTCCCTGTAATGTCAAAATTTTCATTTATTTTGGACATATATTGGTCCAATTAAGTTGTTTCCCCCTTTTTTCCACTCCCTGTAATGTCAAAATATTCATTTATTTTGGACATATATTGGTCCAGTTAAGTTGTTTCCCCTCCCTGTAACGTATGTTTCCT]
[+] EMBL C98483 [ACTAGTAGTTTTNTTAGGTGTTCAGACATGTGAACTNTCCTACAGCAAGTAGTAGTACGTCCATAAAGCTGTGAACTGTGAAGAGAGAATAACAAGAGCAGGTCCAGTATATTGTTCATTTTTACTGGTTTCAGTGTAGTGAATTTATATTTGTGCCGGCTAATTTGACCTGAAAATATAAGGGATCGAA CGTTGCGAATGTGCTTATCTTTGAAATGGAACTTGATTACGATGGTAAAGTGATAGCTGAGCTATGGATTGCTAACAAGAAGGTCGTTGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCCGGTGTCCCGGGTTCGATCCCCGGCAACGGCGTTTCTCATGTTTTTTATTTCCACTCCCTGTAATGTCAAAATTTTCATTTATTTTGGACATATATTGGTCCAATTAAGTTGTTTCCCCCTTTTTTCCACTCCCTGTAATGTCAAAATATTCATTTATTTTGGACATATATTGGTCCAGTTAAGTTGTTTCCCCTCCCTGTAACGTATGTTTCC ]
[-] EMBL C71770 [ GGCTAANTTGACCTGAAAATATAAGGGATCGAACCGTTGCGAATGTGCTTATCTTTGAAATGGAACTTGATTACGATGGTAAAGTGATAGCTGAGCTATGGATTGCTAACAANAAGGTCGTTGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCCGGTGTCCCGGGTTCGATCCCCGGCAACGGCGTTTCTCATGTTTTTTATTTCCACTCCCTGTAATGTNAAAATTTTCANTTATTTTGGACATATATTGGTCCAANTAAGTTGTTTCCCCCTTTTTTCCACTCCCTGTAATGTNAAAATATTCATTTATTTTGGACATATATTGGTCCAGTTAAGTTGTTTCCCCTCCCTGTAACGTATGTTTCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8900#0 CTCTAGGCTCTGCCACCAGTCCGCCCTTCCACTCCTCGTCCTTGCGCTTCTTCGGTTCTT 60
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 CCTCTCCGAGGTCCGAGCTGCCCAAAAGTTTCATCGATCCGTTCTCTGCCACAGCCGCTG 120
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 GATTCTAGCTTTCATTTGCTTGCTCTGATCCGTTGGATTGGATTGCCTCGTTTTGAATAG 180
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 TTCAGAGAAACCTTGCTCTGACGGAGTATTGAGGCTGGCAGCAGGTCCAAGAAATGGGGA 240
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 GGAAATGGCACCATGTCGCCGCGGCGCTGGCCGTGGCCTGCGCCGCGACGGCGGCCGCCA 300
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 CCGTCGCCGCCGCGGCCGACAGGGGGCTTTGGTCCGCCGCCGCCGCCGCCGTGGCGGAGG 360
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 AGGGGGAGGAAGCGAGCCACCTGCGCAAGGTGGCCAACTTTTTGTGGCGGAGCGGCGGCG 420
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 AGAACTCCTACCACCACGTGTGGCCGCCAATGGAATTTGGATGGCAAATTGTGCTGGGGT 480
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 CATTTGTCGGATTCATTGGAGCGGCGTTTGGGAGTATAGGCGGTGTAGGCGGCGGTGGGT 540
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 TCTTCATGCCGATGCTGACCTTGATCATTGGGTTCGACGCAAAGTCATCCGTGGCGATAT 600
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 CAAAATGTATGATAATGGGAGCCGCTGTGTCGACTGTGTACTGCAACCTTAAGCGGAAAC 660
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 ACCCAACTTTGGACATGCCAGTGATTGACTATGATCTAGCCCTTCTTATCCAGCCGATGC 720
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 TCATGCTAGGAATTAGTATCGGTGTCATTTTCAATGTGATATTCCCTGATTGGCTGGTCA 780
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 CAGTTCTCTTGATCATCCTTTTCCTAAGCACTTCAACTAAAGCTTTTCTGAAGGGTATCG 840
consensus_8900#1 -----------------------------------ACTAGTAGTTTTNTTA--GGTGTTC 23
**** **** * * *** *
consensus_8900#0 AGACATG-GAAGAAAGAGACAATAATAAAAAGGGAGGCAGAAAAGCGATCAGAGCAGACA 899
consensus_8900#1 AGACATGTGAACTNTCCTACAGCAAGTAGTAGTACGTCCATAAAGCTGTGAACTGTGAAG 83
******* *** *** ** * ** * * ***** * * **
consensus_8900#0 AGTGAAGAACTAGAGTATAGACCAGTTCCTGCATCTGAGTCAAAACCCCCTTCAGATGAA 959
consensus_8900#1 AGAGAATAACAAGAG-------CAGGTCCAGTATAT------------------------ 112
** *** *** **** *** *** * ** *
consensus_8900#0 GCGGTATCTATTTTGCATAATGTTTACTGGAAGGAATTTGGACTTCTTGCCTTTGTTTGG 1019
consensus_8900#1 ----TGTTCATTTTTACTGGT-TTCAGTGTAGTGAATTTATATTTGTGCCGGCTAATTTG 167
* * ***** * * ** * ** * ****** * ** * * * ** *
consensus_8900#0 ATAGCATTCCTCGCACTTCAGGTTACTAAGAATTACATGCCAACTTGCTCCACGTGGTAC 1079
consensus_8900#1 A-------CCTGAAAATATAAGGGATCGAACGTT----GCGAATGTGCTTATCTTTGAAA 216
* *** * * * * * * ** ** ** **** * * * *
consensus_8900#0 TGGGTTTTGAACTTATTGCAGATCCCAGTGTCAGTTGGGGTGACCATGTATGAAGGACTA 1139
consensus_8900#1 TGGAACTTGATTACGATGGTAA----AGTGATAGCTGAGCTATGGATTGCTAACAAG--A 270
*** **** ** * **** ** ** * * ** * * *
consensus_8900#0 GGATTGATGCAGGGGAGGAGGGTCATATCATCAAATGGAA-ATGAGCAGACCAACCTAAA 1198
consensus_8900#1 AGGTCGTTGTAGTATAGTGGTGA-GTATTCCCGCCTGTCACGCCGGTGTCCCGGGTTCGA 329
* * * ** ** ** * * *** * ** * * ** * *
consensus_8900#0 ATTTCACCAGCTACTTATGTACTGCTTTTTTGGAATAACTGCTGGAATTGTTGCCGGTCT 1258
consensus_8900#1 TCCCCGGCAACGGCGTTTCTCATG-TTTTTTATTTCCACTCCCTGTAATGTCAAAATTTT 388
* ** * * * * * ** ****** *** * * * *** * *
consensus_8900#0 GCTTGGTGTTGGGGGCGGCTCAATCCTAGGACCCATGTTCTTGGACCTTGGTGTCCCTCC 1318
consensus_8900#1 CATTTATTTTGGACATATATTGGTCCAA----TTAAGTTGTTTCCCCCT----TTTTTCC 440
** * **** * *** * * *** ** ** * * ***
consensus_8900#0 ACAAGTCGCAAGTGCCACTGCCACCTTCTCAATGATGTTCTCGGCTTCCATGTCTGCTGT 1378
consensus_8900#1 ACTCCCTGTAA-TGTCA-----AAATATTCATT--TATTTTGGACATATATTGGTCCAGT 492
** * ** ** ** * * *** * * ** * * * * ** * * **
consensus_8900#0 TGAATACTACTTCTTGGACCGATTCCCTGTGCCATATGCTCTTTACTTGACCGTTGTGGC 1438
consensus_8900#1 TAAGT--TGTTTCCC-------CTCCCTGTAACGTATGTTTCCT---------------- 527
* * * * *** ******* * **** * *
consensus_8900#0 ATTCTTTTCTGCGATTGTCGGCCAGCGAATGGTAAGGAAGGTGATCAATTGGTTAGGGCG 1498
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 TGCATCGATCATTATCTTCACATTGTCCATCATGATCTTCCTCAGTACAATCCCTCTAGG 1558
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 TGGAATCGGTATCGTGAACTGGATTGGCAAGATTGAGCGACATGAGTACATGGGATTCGA 1618
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 AGACATATGCAAGTTTGATGCATAGGAGGAAGGTAAACATGGGCACTATATATACTGTGC 1678
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 AGTTTCAGCCAATGGAACACATATATCATCATATTTGCCTGGTCAGATTGCAGCATGGAG 1738
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 ATTGTTTTTTCGCCCTGTAAATTCAAGACAGTTGTATATTGATATTGTCCCTCAATTGAT 1798
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 AGTAGCTCGGAGGAGACAAATTTACTGTACTACTCACTCCATCCTATAATATAAGGGATT 1858
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 TTAAATAGATATGACATATCTTAGTACAATAAATCTAAACATCCACCCAAAATCCCTATA 1918
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 GGACGGGACTAGTAGTTTTTTTAGGTGTTCAGACATGTGAACTCTCCTACAGCAAGTAGT 1978
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 AGTACGTCCATAAAGCTGTGAACTGTGAAGAGAGAATNACAAGAGCNGGTCCNNTNTNTT 2038
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 GNTNAAAAAAAAAAAAAAAAA 2059
consensus_8900#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||