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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8908#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1673 fasta sequence
[TGACTCCTCCCGCCGACTCCGCCGCCGCCGCCGATCCCCATCCATCCCGCGAGCAGAGCAGGAGGAGCGCGAGCGCGAGCGCCGCCGTTCATCCGCCCTTCTGCTTCCGCCGCGTCGCATCCCGATTAATGGCCGACGGTGAGGATATCCAGCCACTTGTATGTGACAATGGCACTGGAATGGTCAAGGCTGGTTTTGCTGGTGATGATGCCCCCAGAGCAGTGTTCCCTAGTATAGTTGGTCGCCCTCGGCACACTGGTGTCATGGTTGGAATGGGCCAAAAAGATGCCTATGTGGGTGATGAGGCACAATCAAAAAGAGGTATCTTGACCTTGAAATACCCTATTGAGCATGGTATTGTGAACAACTGGGACGACATGGAGAAAATCTGGCGTCACACCTTCTACAATGAGCTGCGTGTTGCTCCTGAGGAACATCCAATTTTGCTGACAGAAGCTCCTCTGAACCCAAAGGCTAACAGAGAGAAAATGACCCAAATCATGTTTGAGACATTCAATGCACCAGCAATGTATGTGGCTATTCAAGCTGTTCTTTCACTATATGCCAGTGGTCGTACAACAGGTATTGTGCTTGATTCTGGTGATGGTGTGACTCACACAGTGCCAATCTATGAAGGATATGCACTTCCTCATGCTATTCTTCGGCTGGATCTTGCTGGTCGTGATCTGACTGACTGCCTAATGAAGATCCTTACAGAAAGAGGTTATTCCTTTACAACAACTGCAGAGCGGGAAATTGTGAGAGACATAAGAGAGAAGCTTGCATATATTGCTCTTGATTATGAGCAGGAGCTGGAGACTGCCAAGAGCAGCTCCTCTGTTGAGAAGAGCTATGAGTTGCCAGATGGACAAGTCATCACAATTGGCGCAGAGAGGTTCAGGTGCCCAGAAGTGCTGTTCCAGCCCTCGCTGATTGGGATGGAAGCTCCGGGGATCCATGAGACCACCTACAACTCTATCATGAAGTGTGATGTAGATATCAGGAAGGATCTCTATGGTAACATTGTGCTTAGTGGAGGAACTACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATTACTGCCCTTGCACCAAGCAGCATGAAGATCAAGGTCGTGGCACCTCCTGAGAGAAAATACAGTGTCTGGATTGGAGGTTCTATCCTTGCCTCCCTCAGCACATTCCAACAGATGTGGATATCTAAGGGAGAGTATGATGAATCCGGCCCTTCAATCGTCCACAGGAAATGCTTCTAATCCGAGCCTTGCTCTGAGTATTTTCGGTGTGCCTCTCTGTTGTCTGTACTGTCAGTCTTGTGAGCTTTGCATGGTTGGGCGTGTGTCGGTACTTTCGTCGTCAGTATATTTTCAAGTTTCTGAGAGCGTTTTTTTGCATATATGCTAGTACTACTGGATGAAGAAAAGGTAGATCCAAGCTCGTTTGTTTGAGATATATCCTGCTTTAGTGATTTCAGATGCCGTGTGTTCTAGTGATATGTTGATATTAGTGAGTGAGAATTGTATCGGTTTGGCCGCCTCGGCCGTTCTGTGACTGCGGAACATTAGCTATGTATGTATATTTGCCTAAGTATTGGCTATATTAAAAAAAAAATGTACTTGTGTTCGATGTAATGGTTTCTAATTATACTTTTGTGTTTCTGTCAAAAA]
[+] EMBL CB644540 [TGACTCCTCCCGCCGACTCCGCCGCCGCCGCCGATCCCCATCCATCCCGCGAGCAGAGCAGGAGGAGCGCGAGCGCGAGCGCCGCCGTTCATCCGCCCTTCTGCTTCCGCCGCGTCGCATCCCGATTAATGGCCGACGGTGAGGATATCCAGCCACTTGTATGTGACAATGGCACTGGAATGGTCAAGGCTGGTTTTGCTGGTGATGATGCCCCCAGAGCAGTGTTCCCTAGTATAGTTGGTCGCCCTCGGCACACTGGTGTCATGGTTGGAATGGGCCAAAAAGATGCCTATGTGGGTGATGAGGCACAATCAAAAAGAGGTATCTTGACCTTGAAATACCCTATTGAGCATGGTATTGTGAACAACTGGGACGACATGGAGAAAATCTGGCGTCACACCTTCTACAATGAGCTGCGTGTTGCTCCTGAGGAACATCCAATTTTGCTGACAGAAGCTCCTCTGAACCCAAAGGCTAACAGAGAGAAAATGACCCAAATCATGTTTGAGACATTCAATGCACCAGCAATGTATGTGGCTATTCAAGCTGTTCTTTCACTATATGCCAGTGGTCGTACAACAGGTATTGTGCTTGATTCTGGTGATGGTGTGACTCACACAGTGCCAATCTATGAAGGATATGCACTTCCTCATGCTATTCTTCGGCTGGATCTTGCTGGTCGTGATCTGACTGACTGCCTAATGAAGATCCTTACAGAAAGAGGTTATTCCTTTACAACAACTGCAGAGCGGGAAATTGTGAGAGACATAAGAGAGAAGCTTGCATATATTGCT ]
[+] EMBL AK063598 [ CCCGCCGACTCCGCCGCCGCCGCCGATCCCCATCCATCCCGCGAGCAGAGCAGGAGGAGCGCGAGCGCGAGCGCCGCCGTTCATCCGCCCTTCTGCTTCCGCCGCGTCGCATCCCGATTAATGGCCGACGGTGAGGATATCCAGCCACTTGTATGTGACAATGGCACTGGAATGGTCAAGGCTGGTTTTGCTGGTGATGATGCCCCCAGAGCAGTGTTCCCTAGTATAGTTGGTCGCCCTCGGCACACTGGTGTCATGGTTGGAATGGGCCAAAAAGATGCCTATGTGGGTGATGAGGCACAATCAAAAAGAGGTATCTTGACCTTGAAATACCCTATTGAGCATGGTATTGTGAACAACTGGGACGACATGGAGAAAATCTGGCATCACACCTTCTACAATGAGCTGCGTGTTGCTCCTGAGGAACATCCAATTTTGCTGACAGAAGCTCCTCTGAACCCAAAGGCTAACAGAGAGAAAATGACCCAAATCATGTTTGAGACATTCAATGCACCAGCAATGTATGTGGCTATTCAAGCTGTTCTTTCACTATATGCCAGTGGTCGTACAACAGGTATTGTGCTTGATTCTGGTGATGGTGTGACTCACACAGTGCCAATCTATGAAGGATATGCACTTCCTCATGCTATTCTTCGGTTGGATCTTGCTGGTCGTGATCTGACTGACTGCCTAATGAAGATCCTTACAGAAAGAGGTTATTCCTTTACAACAACTGCAGAGCGGGAAATTGTGAGAGACATAAAAGAGAAGCTTGCATATATTGCTCTTGATTATGAGCAGGAGCTGGAGACTGCCAAGAGCAGCTCCTCTGTTGAGAAGAGCTATGAGTTGCCAGATGGACAAGTCATCACAATTGGCGCAGAGAGGTTCAGGTGCCCAGAAGTGCTGTTCCAGCCCTCGCTGATTGGGATGGAAGCTCCGGGGATCCATGAGACCACCTACAACTCTATCATGAAGTGTGATGTAGATATCAGGAAGGATCTCTATGGTAACATTGTGCTTAGTGGAGGAACTACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATTACTGCCCTTGCACCAAGCAGCATGAAGATCAAGGTCGTGGCACCTCCTGAGAGAAAATACAGTGTCTGGATTGGAGGTTCTATCCTTGCCTCCCTCAGCACATTCCAACAGATGTGGATATCTAAGGGAGAGTATGATGAATCCGGCCCTTCAATCGTCCACAGGAAATGCTTCTAATCCGAGCCTTGCTCTGAGTATTTTCGGTGTGCCTCTCTGTTGTCTGTACTGTCAGTCTTGTGAGCTTTGCATGGTTGGGCGTGTGTCGGTACTTTCGTCGTCAGTATATTTTCAAGTTTCTGAGAGCGTTTTTTTGCATATATGCTAGTACTACTGGATGAAGAAAAGGTAGATCCAAGCTCGTTTGTTTGAGATATATCCTGCTTTAGTGATTTCAGATGCCGTGTGTTCTAGTGATATGTTGATATTAGTGAGTGAGAATTGTATCGGTTTGGCCGCCTCGGCCGTTCTGTGACTGCGGAACATTAGCTATGTATGTATATTTGCCTAAGTAT ]
[-] EMBL CB644541 [ AGTTGCCAGATGGACAAGTCATCACAATTGGCGCAGAGAGGTTCAGGTGCCCAGAAGTGCTGTTCCAGCCCTCGCTGATTGGGATGGAAGCTCCGGGGATCCATGAGACCACCTACAACTCTATCATGAAGTGTGATGTAGATATCAGGAAGGATCTCTATGGTAACATTGTGCTTAGTGGAGGAACTACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATTACTGCCCTTGCACCAAGCAGCATGAAGATCAAGGTCGTGGCACCTCCTGAGAGAAAATACAGTGTCTGGATTGGAGGTTCTATCCTTGCCTCCCTCAGCACATTCCAACAGATGTGGATATCTAAGGGAGAGTATGATGAATCCGGCCCTTCAATCGTCCACAGGAAATGCTTCTAATCCGAGCCTTGCTCTGAGTATTTTCGGTGTGCCTCTCTGTTGTCTGTACTGTCAGTCTTGTGAGCTTTGCATGGTTGGGCGTGTGTCGGTACTTTCGTCGTCAGTATATTTTCAAGTTTCTGAGAGCGTTTTTTTGCATATATGCTAGTACTACTGGATGAAGAAAAGGTAGATCCAAGCTCGTTTGTTTGAGATATATCCTGCTTTAGTGATTTCAGATGCCGTGTGTTCTAGTGATATGTTGATATTAGTGAGTGAGAATTGTATCGGTTTGGCCGCCTCGGCCGTTCTGTGACTGCGGAACATTAGCTATGTAGGTATATTTGCCTAAGTATTGGCTATATTAAAAAAAAAA ]
[+] EMBL CB000562 [ ATGGAAGCTCCGGGGATCCATGAGACCACCTACAACTCTATCATGAAGTGTGATGTAGATATCAGGAAGGATCTCTATGGTAACATTGTGCTTAGTGGAGGAACTACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATTACTGCCCTTGCACCAAGCAGCATGAAGATCAAGGTCGTGGCACCTCCTGAGAGAAAATACAGTGTCTGGATTGGAGGTTCTATCCTTGCCTCCCTCAGCACATTCCAACAGATGTGGATATCTAAGGGAGAGTATGATGAATCCGGCCCTTCAATCGTCCACAGGAAATGCTTCTAATCCGAGCCTTGCTCTGAGTATTTTCGGTGTGCCTCTCTGTTGTCTGTACTGTCAGTCTTGTGAGCTTTGCATGGTTGGGCGTGTGTCGGTACTTTCGTCGTCAGTATATTTTCAAGTTTCTGAGAGCGTTTTTTTGCATATATGCTAGTACTACTGGATGAAGAAAAGGTAGATCCAAGCTCGTTTGTTTGAGATATATCCTGCTTTAGTGATTTCAGATGCCGTGTGTTCTAGTGATATGTTGATATTAGTGAGTGAGAATTGTATCGGTTTGGCCGCCTCGGCCGTTCTGTGACTGCGGAACATTAGC ]
[+] EMBL BI797784 [ GAAGATCAAGGTCGTGGCACCTCCTGAGAGAAAATACAGTGTCTGGATTGGAGGTTCTATCCTTGCCTCCCTCAGCACATTCCAACAGATGTGGATATCTAAGGGAGAGTATGATGAATCCGGCCCTTCAATCGTCCACAGGAAATGCTTCTAATCCGAGCCTTGCTCTGAGTATTTTCGGTGTGCCTCTCTGTTGTCTGTACTGTCAGTCTTGTGAGCTTTGCATGGTTGGGCGTGTGTCGGTACTTTCGTCGTCAGTATATTTTCAAGTTTCTGAGAGCGTTTTTTTGCATATATGCTAGTACTACTGGATGAAGAAAAGGTAGATCCAAGCTCGTTTGTTTGAGATATATCCTGCTTTAGTGATTTCAGATGCCGTGTGTTCTAGTGATATGTTGATATTAGTGAGTGAGAATTGTATCGGTTT GCCGCCTCGGCCGTTCTGTGACTGCGGAACATTAGCTATGTATGTATATTTGCCTAAGTATTGGCTATATTACTATGGTTGTGTACTTGTGTTCGATGTAATGGTTTCTAATTATACTTTTGTGTTTCTGTCAAAAA]
consensusID : consensus_8908#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence
[GCATGGTATTGTGAACAACTGGGACGACATGGAGAAAATCTGGCATCACACATTCTACAATGAGCTGCGTGTTGCTCCTGAGGAACATCCAATTTTGCTGACAGAAGCTCCTCTGAACCCAAAGGCTAACAGAGNGAAAATGCCCCNAATNATGTTTGAGACATTCAAATGCACCAGCAATGTATGTGGCTATTCAAGCTGTTCTTTCACTATATGGCAGTGGTCGTACAANCAGGTATTTGTGCTTNATTCTGGTGATGGTGTNACTNACACAGTGCCCAACTCTNTTGACNGGNTATGGCACTTACCTCANNGACTATTTCTTCCGGGTNTGGGATCCTTNCTCGGNTCGTG]
[+] EMBL OSAD89S [GCATGGTATTGTGAACAACTGGGACGACATGGAGAAAATCTGGCATCACACATTCTACAATGAGCTGCGTGTTGCTCCTGAGGAACATCCAATTTTGCTGACAGAAGCTCCTCTGAACCCAAAGGCTAACAGAGNGAAAATGCCCCNAATNATGTTTGAGACATTCAAATGCACCAGCAATGTATGTGGCTATTCAAGCTGTTCTTTCACTATATGGCAGTGGTCGTACAANCAGGTATTTGTGCTTNATTCTGGTGATGGTGTNACTNACACAGTGCCCAACTCTNTTGACNGGNTATGGCACTTACCTCANNGACTATTTCTTCCGGGTNTGGGATCCTTNCTCGGNTCGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8908#0 TGACTCCTCCCGCCGACTCCGCCGCCGCCGCCGATCCCCATCCATCCCGCGAGCAGAGCA 60
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 GGAGGAGCGCGAGCGCGAGCGCCGCCGTTCATCCGCCCTTCTGCTTCCGCCGCGTCGCAT 120
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 CCCGATTAATGGCCGACGGTGAGGATATCCAGCCACTTGTATGTGACAATGGCACTGGAA 180
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 TGGTCAAGGCTGGTTTTGCTGGTGATGATGCCCCCAGAGCAGTGTTCCCTAGTATAGTTG 240
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 GTCGCCCTCGGCACACTGGTGTCATGGTTGGAATGGGCCAAAAAGATGCCTATGTGGGTG 300
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 ATGAGGCACAATCAAAAAGAGGTATCTTGACCTTGAAATACCCTATTGAGCATGGTATTG 360
consensus_8908#1 -------------------------------------------------GCATGGTATTG 11
***********
consensus_8908#0 TGAACAACTGGGACGACATGGAGAAAATCTGGCGTCACACCTTCTACAATGAGCTGCGTG 420
consensus_8908#1 TGAACAACTGGGACGACATGGAGAAAATCTGGCATCACACATTCTACAATGAGCTGCGTG 71
********************************* ****** *******************
consensus_8908#0 TTGCTCCTGAGGAACATCCAATTTTGCTGACAGAAGCTCCTCTGAACCCAAAGGCTAACA 480
consensus_8908#1 TTGCTCCTGAGGAACATCCAATTTTGCTGACAGAAGCTCCTCTGAACCCAAAGGCTAACA 131
************************************************************
consensus_8908#0 GAGAGAAAATGACCCAAATCATGTTTGAGACATTCAA-TGCACCAGCAATGTATGTGGCT 539
consensus_8908#1 GAGNGAAAATGCCCCNAATNATGTTTGAGACATTCAAATGCACCAGCAATGTATGTGGCT 191
*** ******* *** *** ***************** **********************
consensus_8908#0 ATTCAAGCTGTTCTTTCACTATATGCCAGTGGTCGTACAAC-AGGTATT-GTGCTTGATT 597
consensus_8908#1 ATTCAAGCTGTTCTTTCACTATATGGCAGTGGTCGTACAANCAGGTATTTGTGCTTNATT 251
************************* ************** ******* ****** ***
consensus_8908#0 CTGGTGATGGTGTGACTCACACAGTGCCAATCTATGAAGGATATGCACTTCCTCATGCTA 657
consensus_8908#1 CTGGTGATGGTGTNACTNACACAGTGCCCAACTCTNTTG---ACNGGNTATGGCACTTAC 308
************* *** ********** * ** * * * * **
consensus_8908#0 TTCTTCGGCTGGATCTTGCTGGTCGTGATCTGACTGACTGCCTAATGAAGATCCTTACAG 717
consensus_8908#1 CTCANNGACTATTTCTT-CCGGGTNTGGGATCCTTNCTCGGNTCGTG------------- 354
** * ** **** * ** ** * * * * **
consensus_8908#0 AAAGAGGTTATTCCTTTACAACAACTGCAGAGCGGGAAATTGTGAGAGACATAAGAGAGA 777
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 AGCTTGCATATATTGCTCTTGATTATGAGCAGGAGCTGGAGACTGCCAAGAGCAGCTCCT 837
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 CTGTTGAGAAGAGCTATGAGTTGCCAGATGGACAAGTCATCACAATTGGCGCAGAGAGGT 897
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 TCAGGTGCCCAGAAGTGCTGTTCCAGCCCTCGCTGATTGGGATGGAAGCTCCGGGGATCC 957
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 ATGAGACCACCTACAACTCTATCATGAAGTGTGATGTAGATATCAGGAAGGATCTCTATG 1017
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 GTAACATTGTGCTTAGTGGAGGAACTACCATGTTCCCTGGCATTGCTGACAGGATGAGCA 1077
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 AGGAGATTACTGCCCTTGCACCAAGCAGCATGAAGATCAAGGTCGTGGCACCTCCTGAGA 1137
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 GAAAATACAGTGTCTGGATTGGAGGTTCTATCCTTGCCTCCCTCAGCACATTCCAACAGA 1197
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 TGTGGATATCTAAGGGAGAGTATGATGAATCCGGCCCTTCAATCGTCCACAGGAAATGCT 1257
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 TCTAATCCGAGCCTTGCTCTGAGTATTTTCGGTGTGCCTCTCTGTTGTCTGTACTGTCAG 1317
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 TCTTGTGAGCTTTGCATGGTTGGGCGTGTGTCGGTACTTTCGTCGTCAGTATATTTTCAA 1377
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 GTTTCTGAGAGCGTTTTTTTGCATATATGCTAGTACTACTGGATGAAGAAAAGGTAGATC 1437
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 CAAGCTCGTTTGTTTGAGATATATCCTGCTTTAGTGATTTCAGATGCCGTGTGTTCTAGT 1497
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 GATATGTTGATATTAGTGAGTGAGAATTGTATCGGTTTGGCCGCCTCGGCCGTTCTGTGA 1557
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 CTGCGGAACATTAGCTATGTATGTATATTTGCCTAAGTATTGGCTATATTAAAAAAAAAA 1617
consensus_8908#1 ------------------------------------------------------------
consensus_8908#0 TGTACTTGTGTTCGATGTAATGGTTTCTAATTATACTTTTGTGTTTCTGTCAAAAA 1673
consensus_8908#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||