These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8911#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1423 fasta sequence [CCGCCGCCGCCGCCGTCTACTCGCTCTCGCCGCCGCCCGCGACTCCCCCCTCCTCGGCCGCTCGCACCCTCGCCGCGTCGACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATTCGGGGGAGGGCTGGAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTGACGCCCGCCCGCCTCGACGGAGCCGCGCCGCGTGCAGCTACTGCTTAGCTAATCACGGACTTAGAATTCTGAGCTGTTTGTGTGTGAACATTTTCTTTGTTGTTTGTTTCGTTTTGCAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATGTTCCTCAAGGGTGATTCAGTGTATGATTTTCCCTTTCCGTCTCATGGTTTATGTGCATGATATGATTTGATCCGCTTCAATGATCAATGGTGTGTCCAAAGCATTTTATTTGTTTTCGGTCCACTTCGGTATGGATATTGCTAGGTGATGAGTGGTGTCGCTTCTTTGGTGATGCTGGCTGTTATTTCTGCTGAATTTCAACTTAACCATGCAAACTTAAGTTATAGGAGAAATGCTCAAATATTTTATTTCTGTTATTTCGTTAAAAATGTTTGTCATTGTTTCTGGAGCTACTTCCTCCGTTTCACAACGTAATTCATAAATGTGGGAAATGCTAGAATGACTTACGTTGTGAAACGGATGGAGTAAATGTTAAATATGCAACCTTCTAATGACAGTTTAGTTGATTTCATTAGAAATATGCATAATGAACTAGGGTTATTGATCCGGTGATTTTACTTGAATAAGGAAACCTTCTAATGACAGTTTAGTATGTGCTTATGAATGCTTTGGGTGGTATACAGGTTATTTGCTGTTTTCTTTGCAGAGAAGTGGATGCTTTGTTAGCGCAATAAGCTGGGGGATATCACTAAACTTTTGCAATGTCAAACTTGAAGGAAATTTAGAAATTCTCTTTCTTTAATTTGTGGACAAAGTTAAGTCCATTAGTCTTGATGAGGTGCTTCTTTTCGTGCTTGCAGAAGGCCTGGTGTTCTCGTACTTATAAATGATTGTGACTGGGAGCTATGCGGTGGCCTTGACGCGGAGTTGGAGGAGAAGGATGTTGTTGTTTTTATCTCCACATTACACGGTGGTTAGTACAACTATTAGGACTACCGAAATCACCACTGATATCATGTTGCTAAATGCATCTTGTACCATCAGAAACAGAGGTTGTGTGCCATAAATTTCTGGAGAGAATGGATTGTGGAGAGGAATCTGCTGAAGTTGATATGGTCAATTTCTGTAATGAAAAGGCAGTTGTCAGTTATGAATATTCAATATCACA] [+] EMBL AK103374 [CCGCCGCCGCCGCCGTCTACTCGCTCTCGCCGCCGCCCGCGACTCCCCCCTCCTCGGCCGCTCGCACCCTCGCCGCGTCGACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATTCGGGGGAGGGCTGGAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTGACGCCCGCCCGCCTCGACGGAGCCGCGCCGCGTGCAGCTACTGCTTAGCTAATCACGGACTTAGAATTCTGAGCTGTTTGTGTGTGAACATTTTCTTTGTTGTTTGTTTCGTTTTGCAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATGTTCCTCAAGGGTGATTCAGTGTATGATTTTCCCTTTCCGTCTCATGGTTTATGTGCATGATATGATTTGATCCGCTTCAATGATCAATGGTGTGTCCAAAGCATTTTATTTGTTTTCGGTCCACTTCGGTATGGATATTGCTAGGTGATGAGTGGTGTCGCTTCTTTGGTGATGCTGGCTGTTATTTCTGCTGAATTTCAACTTAACCATGCAAACTTAAGTTATAGGAGAAATGCTCAAATATTTTATTTCTGTTATTTCGTTAAAAATGTTTGTCATTGTTTCTGGAGCTACTTCCTCCGTTTCACAACGTAATTCATAAATGTGGGAAATGCTAGAATGACTTACGTTGTGAAACGGATGGAGTAAATGTTAAATATGCAACCTTCTAATGACAGTTTAGTTGATTTCATTAGAAATATGCATAATGAACTAGGGTTATTGATCCGGTGATTTTACTTGAATAAGGAAACCTTCTAATGACAGTTTAGTATGTGCTTATGAATGCTTTGGGTGGTATACAGGTTATTTGCTGTTTTCTTTGCAGAGAAGTGGATGCTTTGTTAGCGCAATAAGCTGGGGGATATCACTAAACTTTTGCAATGTCAAACTTGAAGGAAATTTAGAAATTCTCTTTCTTTAATTTGTGGACAAAGTTAAGTCCATTAGTCTTGATGAGGTGCTTCTTTTCGTGCTTGCAGAAGGCCTGGTGTTCTCGTACTTATAAATGATTGTGACTGGGAGCTATGCGGTGGCCTTGACGCGGAGTTGGAGGAGAAGGATGTTGTTGTTTTTATCTCCACATTACACGGTGGTTAGTACAACTATTAGGACTACCGAAATCACCACTGATATCATGTTGCTAAATGCATCTTGTACCATCAGAAACAGAGGTTGTGTGCCATAAATTTCTGGAGAGAATGGATTGTGGAGAGGAATCTGCTGAAGTTGATATGGTCAATTTCTGTAATGAAAAGGCAGTTGTCAGTTATGAATATTCAATATCACA] consensusID : consensus_8911#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 668 fasta sequence [GAGCCAATTATTCCCCACCGCCNGCCGCCGCCGTCTACTCGCTCTCGCCGCCGCCCGCGACTCCCCCCTCCTCGGCCGCTCGCACCCTCGCCGCGTCGACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATTCGGGGGAGGGCTGGAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATGTTCCTCAA-GGGTGATTCAGTAAGG-CCT-GGTGTTCTCGTACTTATAAATGATTGTGAC-TGGGAGCTATGCGGTGGCCTTGACGCGGAGTTGGAGGAGAAGGATGTT-GTTGTTTTTATCTCCACATTACACGGT-GGTT-AGTACAACT-ATTAGGACTACCGAAATCACCACT-GATATCATGTTGCTAAATGCATCTTGTACCATCAGAAACAGAGGTTGTGTGCCATAAATTTCTGGAGAGAATGGATTGTGGAGAGGAATCTGCTGAAGTTGATATGGTCAATTTCTGTAATGAAAAGGCAGTTGTCAGTTATGAATATTCAATATCACAGATTTGCAGTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU101270 [GAGCCAATTATTCCCCACCGCCNGCCGCCGCCGTCTACTCGCTCTCGCCGCCGCCCGCGACTCCCCCCTCCTCGGCCGCTCGCACCCTCGCCGCGTCGACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATTCGGGGGAGGGCTGGAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATGTTCCTCAA GGGTGATTCAGTAAGG CCT GGTGTTCTCGTACTTATAAATGATTGTGAC TGGGAGCTATGCGGTGGCCTTGACGCGGAGTTGGAGGAGAAGGATGTT GTTGTTTTTATCTCCACATTACACGGT GGTT AGTACAACT ATTAGGACTACCGAAATCACCACT GATATCATGTTGCTAAATGCATCTTGTACCATCAGAAACAGAGGTTGTGTGCCATAAATTTCTGGAGAGAATGGATTGTGGAGAGGAATCTGCTGAAGTTGATATGGTCAATTTCTGTAATGAAAAGGCAGTTGTCAGTTATGAATATTCAATATCACAGATTTGCAGTAAAAAAA ] [+] EMBL C73435 [ GCCAATTATNCCCCACCNCCN CCNCCNCCNTCTACTCGCTCTCNCCNCCNCCCGCNACTCCCCCCTCCTCNGCCGCTCGCACCCTCGCCGCGTCGACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATTCGGGGGAGGGCTGGAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATTTTNCTCAAGGGGTGATTCAGTAAGGCCCTGGGTGTTCTCGTACTTATAAATGATTGNGACTTGGGAG ] [+] EMBL C74027 [ CCCCCTCCTCGGCCGCTCGCACCCTCGCCGCGTCGACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATTCGGGGGAGGGCTGGAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATGTTCCTCAA GGGTGATTCAGTAAGG CCT GGTGTTCTCGTACTTATAAATGATTGTGAC TGGGAGCTATGCGGTGGCCTTGACGCGGAGTTGGAGGAGAAGGATGTTGGTTGTTTTTATCTCCACATTACACGGTGGGTTAAGTACAACTAATTAGGACTACCGAAATCACCACTGGATATCATGTTGCTAAATG ] [+] EMBL OSR04302A [ TCGCACCCTCGCCGCGTCGACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATTCGGGGGAGGGCTGGAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATGTTCCTCAA GGGTGATTCAGTAAGG CCT GGTGTTCTAGTACTTATAAATGATTGTGAC TGGGAGCTATGCGGTGGCCTTNACGCGGAGTTNGA ] [+] EMBL AU164540 [ gGCACCCTCGCCGCGTCNACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATTC GGGGAGGGCT GAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATGTTCCTCAA GGGTGATTCAGTAAGG CCT GGTGTTCTCGTACTTATAAATGATTGTGAC TGGGAGCTATGCGGTGGCCTTGACGCGGAGTTGGAGGAGAAGGATGTT GTTGTTTTTATCTCCACATTACACGGT GGTT AGTACAACT ATTAGGACTACCGAAATCACCACT GATATCATGTTGCTAAATGCATCTTGTACCATCAGAAACAGAGGTTGTGTGCCATAAATTTCTGGAGAGAATGGATTGTGGAGAGGAATCTGCTGAAGTTGATATGGTCAATTTCTGTAATGAAAAGGCAGTTGTCAGTTATGAATATTCAATATCACAGATTTGCAGTAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8911#0 CCGCCGCCGCCGCCGTCTACTCGCTCTCGCCGCCGCCCGCGACTCCCCCCTCCTCGGCCG 60 consensus_8911#1 ------------------------------------------------------------ consensus_8911#0 CTCGCACCCTCGCCGCGTCGACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCT 120 consensus_8911#1 ------------------------------------------------------------ consensus_8911#0 CTCCGCCATGCATCTAACCCTCGAATTCGGGGGAGGGCTGGAGCTGCTCCTGGAGAAGTC 180 consensus_8911#1 ------------------------------------------------------------ consensus_8911#0 CACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTGACGCCCGC 240 consensus_8911#1 ------------------------------------------------------------ consensus_8911#0 CCGCCTCGACGGAGCCGCGCCGCGTGCAGCTACTGCTTAGCTAATCACGGACTTAGAATT 300 consensus_8911#1 ------------------------------------------------------------ consensus_8911#0 CTGAGCTGTTTGTGTGTGAACATTTTCTTTGTTGTTTGTTTCGTTTTGCAGGTCGTGATG 360 consensus_8911#1 ------------------------------------------------------------ consensus_8911#0 AAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATGTTCCTC 420 consensus_8911#1 ------------------------------------------------------------ consensus_8911#0 AAGGGTGATTCAGTGTATGATTTTCCCTTTCCGTCTCATGGTTTATGTGCATGATATGAT 480 consensus_8911#1 ------------------------------------------------------------ consensus_8911#0 TTGATCCGCTTCAATGATCAATGGTGTGTCCAAAGCATTTTATTTGTTTTCGGTCCACTT 540 consensus_8911#1 ------------------------------------------------------------ consensus_8911#0 CGGTATGGATATTGCTAGGTGATGAGTGGTGTCGCTTCTTTGGTGATGCTGGCTGTTATT 600 consensus_8911#1 ------------------------------------------------------------ consensus_8911#0 TCTGCTGAATTTCAACTTAACCATGCAAACTTAAGTTATAGGAGAAATGCTCAAATATTT 660 consensus_8911#1 ------------------------------------------------------------ consensus_8911#0 TATTTCTGTTATTTCGTTAAAAATGTTTGTCATTGTTTCTGGAGCTACTTCCTCCGTTTC 720 consensus_8911#1 ------------------------------------------------------------ consensus_8911#0 ACAACGTAATTCATAAATGTGGGAAATGCTAGAATGACTTACGTTGTGAAACGGATGGAG 780 consensus_8911#1 --------------------------------------------------------GAGC 4 * consensus_8911#0 TAAATGTTAAATATGCAACCTTCTAATGACAGTTTAGTTGATTTCATTAGAAATATGCAT 840 consensus_8911#1 CAATTATTC--CCCACCGCCNGCCGCCG-CCGTCTACTCGCTCTCGCC-GCCGCCCGC-- 58 ** * ** * ** * * * ** ** * * * ** * ** consensus_8911#0 AATGAACTAGGGTTATTGATCCGGTGATTTTACTTGAATAAGGAAACCTTCTAATGACAG 900 consensus_8911#1 ---GACTCCCCCCTCCTCGGCCGCTCGCAC--CCTCGCCGCGTCGACGCTCGATCGCTGT 113 ** * * *** * * * * ** ** * * consensus_8911#0 TTTAGTATGTGCTTATGAATGCTTTGGGTGGTATACAGGTTATTTGCTGTTTTCTTTGCA 960 consensus_8911#1 TCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATT---CGGGG 170 * * * ** * * * ** ** * * * ** * consensus_8911#0 GAGAAGTGGATGCTTTGTTAGCGCAATAAGCTGGGGGATATCAC-TAAACTTTTG---CA 1016 consensus_8911#1 GAGGGCTGGAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCA 230 *** **** * * * * * * * ** * * * ** * ** consensus_8911#0 ATGTCAA--ACTTGAAGGAAATTTAGAAATTCTCTTTCTTTAATTTGTGGACAAAGTTAA 1074 consensus_8911#1 ACGACGGCGATGGGAAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGA 290 * * * * ***** * **** * ** * ** * * ** * * consensus_8911#0 GTCCATTAGTCTTGATGAGGTGCTTCTTTTCG-TGCTTGCAGAAGGCCTGGTGTTCTCGT 1133 consensus_8911#1 -TCAAGGAGAGGCCG-GAGATGTTCCTCAAGGGTGATTCAGTAAGGCCTGGTGTTCTCGT 348 ** * ** *** ** * ** * ** ** ****************** consensus_8911#0 ACTTATAAATGATTGTGACTGGGAGCTATGCGGTGGCCTTGACGCGGAGTTGGAGGAGAA 1193 consensus_8911#1 ACTTATAAATGATTGTGACTGGGAGCTATGCGGTGGCCTTGACGCGGAGTTGGAGGAGAA 408 ************************************************************ consensus_8911#0 GGATGTTGTTGTTTTTATCTCCACATTACACGGTGGTTAGTACAACTATTAGGACTACCG 1253 consensus_8911#1 GGATGTTGTTGTTTTTATCTCCACATTACACGGTGGTTAGTACAACTATTAGGACTACCG 468 ************************************************************ consensus_8911#0 AAATCACCACTGATATCATGTTGCTAAATGCATCTTGTACCATCAGAAACAGAGGTTGTG 1313 consensus_8911#1 AAATCACCACTGATATCATGTTGCTAAATGCATCTTGTACCATCAGAAACAGAGGTTGTG 528 ************************************************************ consensus_8911#0 TGCCATAAATTTCTGGAGAGAATGGATTGTGGAGAGGAATCTGCTGAAGTTGATATGGTC 1373 consensus_8911#1 TGCCATAAATTTCTGGAGAGAATGGATTGTGGAGAGGAATCTGCTGAAGTTGATATGGTC 588 ************************************************************ consensus_8911#0 AATTTCTGTAATGAAAAGGCAGTTGTCAGTTATGAATATTCAATATCACA---------- 1423 consensus_8911#1 AATTTCTGTAATGAAAAGGCAGTTGTCAGTTATGAATATTCAATATCACAGATTTGCAGT 648 ************************************************** consensus_8911#0 -------------------- consensus_8911#1 AAAAAAAAAAAAAAAAAAAA 668 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||