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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8911#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1423 fasta sequence
[CCGCCGCCGCCGCCGTCTACTCGCTCTCGCCGCCGCCCGCGACTCCCCCCTCCTCGGCCGCTCGCACCCTCGCCGCGTCGACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATTCGGGGGAGGGCTGGAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTGACGCCCGCCCGCCTCGACGGAGCCGCGCCGCGTGCAGCTACTGCTTAGCTAATCACGGACTTAGAATTCTGAGCTGTTTGTGTGTGAACATTTTCTTTGTTGTTTGTTTCGTTTTGCAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATGTTCCTCAAGGGTGATTCAGTGTATGATTTTCCCTTTCCGTCTCATGGTTTATGTGCATGATATGATTTGATCCGCTTCAATGATCAATGGTGTGTCCAAAGCATTTTATTTGTTTTCGGTCCACTTCGGTATGGATATTGCTAGGTGATGAGTGGTGTCGCTTCTTTGGTGATGCTGGCTGTTATTTCTGCTGAATTTCAACTTAACCATGCAAACTTAAGTTATAGGAGAAATGCTCAAATATTTTATTTCTGTTATTTCGTTAAAAATGTTTGTCATTGTTTCTGGAGCTACTTCCTCCGTTTCACAACGTAATTCATAAATGTGGGAAATGCTAGAATGACTTACGTTGTGAAACGGATGGAGTAAATGTTAAATATGCAACCTTCTAATGACAGTTTAGTTGATTTCATTAGAAATATGCATAATGAACTAGGGTTATTGATCCGGTGATTTTACTTGAATAAGGAAACCTTCTAATGACAGTTTAGTATGTGCTTATGAATGCTTTGGGTGGTATACAGGTTATTTGCTGTTTTCTTTGCAGAGAAGTGGATGCTTTGTTAGCGCAATAAGCTGGGGGATATCACTAAACTTTTGCAATGTCAAACTTGAAGGAAATTTAGAAATTCTCTTTCTTTAATTTGTGGACAAAGTTAAGTCCATTAGTCTTGATGAGGTGCTTCTTTTCGTGCTTGCAGAAGGCCTGGTGTTCTCGTACTTATAAATGATTGTGACTGGGAGCTATGCGGTGGCCTTGACGCGGAGTTGGAGGAGAAGGATGTTGTTGTTTTTATCTCCACATTACACGGTGGTTAGTACAACTATTAGGACTACCGAAATCACCACTGATATCATGTTGCTAAATGCATCTTGTACCATCAGAAACAGAGGTTGTGTGCCATAAATTTCTGGAGAGAATGGATTGTGGAGAGGAATCTGCTGAAGTTGATATGGTCAATTTCTGTAATGAAAAGGCAGTTGTCAGTTATGAATATTCAATATCACA]
[+] EMBL AK103374 [CCGCCGCCGCCGCCGTCTACTCGCTCTCGCCGCCGCCCGCGACTCCCCCCTCCTCGGCCGCTCGCACCCTCGCCGCGTCGACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATTCGGGGGAGGGCTGGAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTGACGCCCGCCCGCCTCGACGGAGCCGCGCCGCGTGCAGCTACTGCTTAGCTAATCACGGACTTAGAATTCTGAGCTGTTTGTGTGTGAACATTTTCTTTGTTGTTTGTTTCGTTTTGCAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATGTTCCTCAAGGGTGATTCAGTGTATGATTTTCCCTTTCCGTCTCATGGTTTATGTGCATGATATGATTTGATCCGCTTCAATGATCAATGGTGTGTCCAAAGCATTTTATTTGTTTTCGGTCCACTTCGGTATGGATATTGCTAGGTGATGAGTGGTGTCGCTTCTTTGGTGATGCTGGCTGTTATTTCTGCTGAATTTCAACTTAACCATGCAAACTTAAGTTATAGGAGAAATGCTCAAATATTTTATTTCTGTTATTTCGTTAAAAATGTTTGTCATTGTTTCTGGAGCTACTTCCTCCGTTTCACAACGTAATTCATAAATGTGGGAAATGCTAGAATGACTTACGTTGTGAAACGGATGGAGTAAATGTTAAATATGCAACCTTCTAATGACAGTTTAGTTGATTTCATTAGAAATATGCATAATGAACTAGGGTTATTGATCCGGTGATTTTACTTGAATAAGGAAACCTTCTAATGACAGTTTAGTATGTGCTTATGAATGCTTTGGGTGGTATACAGGTTATTTGCTGTTTTCTTTGCAGAGAAGTGGATGCTTTGTTAGCGCAATAAGCTGGGGGATATCACTAAACTTTTGCAATGTCAAACTTGAAGGAAATTTAGAAATTCTCTTTCTTTAATTTGTGGACAAAGTTAAGTCCATTAGTCTTGATGAGGTGCTTCTTTTCGTGCTTGCAGAAGGCCTGGTGTTCTCGTACTTATAAATGATTGTGACTGGGAGCTATGCGGTGGCCTTGACGCGGAGTTGGAGGAGAAGGATGTTGTTGTTTTTATCTCCACATTACACGGTGGTTAGTACAACTATTAGGACTACCGAAATCACCACTGATATCATGTTGCTAAATGCATCTTGTACCATCAGAAACAGAGGTTGTGTGCCATAAATTTCTGGAGAGAATGGATTGTGGAGAGGAATCTGCTGAAGTTGATATGGTCAATTTCTGTAATGAAAAGGCAGTTGTCAGTTATGAATATTCAATATCACA]
consensusID : consensus_8911#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 668 fasta sequence
[GAGCCAATTATTCCCCACCGCCNGCCGCCGCCGTCTACTCGCTCTCGCCGCCGCCCGCGACTCCCCCCTCCTCGGCCGCTCGCACCCTCGCCGCGTCGACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATTCGGGGGAGGGCTGGAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATGTTCCTCAA-GGGTGATTCAGTAAGG-CCT-GGTGTTCTCGTACTTATAAATGATTGTGAC-TGGGAGCTATGCGGTGGCCTTGACGCGGAGTTGGAGGAGAAGGATGTT-GTTGTTTTTATCTCCACATTACACGGT-GGTT-AGTACAACT-ATTAGGACTACCGAAATCACCACT-GATATCATGTTGCTAAATGCATCTTGTACCATCAGAAACAGAGGTTGTGTGCCATAAATTTCTGGAGAGAATGGATTGTGGAGAGGAATCTGCTGAAGTTGATATGGTCAATTTCTGTAATGAAAAGGCAGTTGTCAGTTATGAATATTCAATATCACAGATTTGCAGTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU101270 [GAGCCAATTATTCCCCACCGCCNGCCGCCGCCGTCTACTCGCTCTCGCCGCCGCCCGCGACTCCCCCCTCCTCGGCCGCTCGCACCCTCGCCGCGTCGACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATTCGGGGGAGGGCTGGAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATGTTCCTCAA GGGTGATTCAGTAAGG CCT GGTGTTCTCGTACTTATAAATGATTGTGAC TGGGAGCTATGCGGTGGCCTTGACGCGGAGTTGGAGGAGAAGGATGTT GTTGTTTTTATCTCCACATTACACGGT GGTT AGTACAACT ATTAGGACTACCGAAATCACCACT GATATCATGTTGCTAAATGCATCTTGTACCATCAGAAACAGAGGTTGTGTGCCATAAATTTCTGGAGAGAATGGATTGTGGAGAGGAATCTGCTGAAGTTGATATGGTCAATTTCTGTAATGAAAAGGCAGTTGTCAGTTATGAATATTCAATATCACAGATTTGCAGTAAAAAAA ]
[+] EMBL C73435 [ GCCAATTATNCCCCACCNCCN CCNCCNCCNTCTACTCGCTCTCNCCNCCNCCCGCNACTCCCCCCTCCTCNGCCGCTCGCACCCTCGCCGCGTCGACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATTCGGGGGAGGGCTGGAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATTTTNCTCAAGGGGTGATTCAGTAAGGCCCTGGGTGTTCTCGTACTTATAAATGATTGNGACTTGGGAG ]
[+] EMBL C74027 [ CCCCCTCCTCGGCCGCTCGCACCCTCGCCGCGTCGACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATTCGGGGGAGGGCTGGAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATGTTCCTCAA GGGTGATTCAGTAAGG CCT GGTGTTCTCGTACTTATAAATGATTGTGAC TGGGAGCTATGCGGTGGCCTTGACGCGGAGTTGGAGGAGAAGGATGTTGGTTGTTTTTATCTCCACATTACACGGTGGGTTAAGTACAACTAATTAGGACTACCGAAATCACCACTGGATATCATGTTGCTAAATG ]
[+] EMBL OSR04302A [ TCGCACCCTCGCCGCGTCGACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATTCGGGGGAGGGCTGGAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATGTTCCTCAA GGGTGATTCAGTAAGG CCT GGTGTTCTAGTACTTATAAATGATTGTGAC TGGGAGCTATGCGGTGGCCTTNACGCGGAGTTNGA ]
[+] EMBL AU164540 [ gGCACCCTCGCCGCGTCNACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATTC GGGGAGGGCT GAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATGTTCCTCAA GGGTGATTCAGTAAGG CCT GGTGTTCTCGTACTTATAAATGATTGTGAC TGGGAGCTATGCGGTGGCCTTGACGCGGAGTTGGAGGAGAAGGATGTT GTTGTTTTTATCTCCACATTACACGGT GGTT AGTACAACT ATTAGGACTACCGAAATCACCACT GATATCATGTTGCTAAATGCATCTTGTACCATCAGAAACAGAGGTTGTGTGCCATAAATTTCTGGAGAGAATGGATTGTGGAGAGGAATCTGCTGAAGTTGATATGGTCAATTTCTGTAATGAAAAGGCAGTTGTCAGTTATGAATATTCAATATCACAGATTTGCAGTAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8911#0 CCGCCGCCGCCGCCGTCTACTCGCTCTCGCCGCCGCCCGCGACTCCCCCCTCCTCGGCCG 60
consensus_8911#1 ------------------------------------------------------------
consensus_8911#0 CTCGCACCCTCGCCGCGTCGACGCTCGATCGCTGTTCGCGCTTCGCCTCCTCCCAATCCT 120
consensus_8911#1 ------------------------------------------------------------
consensus_8911#0 CTCCGCCATGCATCTAACCCTCGAATTCGGGGGAGGGCTGGAGCTGCTCCTGGAGAAGTC 180
consensus_8911#1 ------------------------------------------------------------
consensus_8911#0 CACCAAGGTGCACAAGGTGGACCTCCAGCCCAACGACGGCGATGGGAAGGTGACGCCCGC 240
consensus_8911#1 ------------------------------------------------------------
consensus_8911#0 CCGCCTCGACGGAGCCGCGCCGCGTGCAGCTACTGCTTAGCTAATCACGGACTTAGAATT 300
consensus_8911#1 ------------------------------------------------------------
consensus_8911#0 CTGAGCTGTTTGTGTGTGAACATTTTCTTTGTTGTTTGTTTCGTTTTGCAGGTCGTGATG 360
consensus_8911#1 ------------------------------------------------------------
consensus_8911#0 AAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGATCAAGGAGAGGCCGGAGATGTTCCTC 420
consensus_8911#1 ------------------------------------------------------------
consensus_8911#0 AAGGGTGATTCAGTGTATGATTTTCCCTTTCCGTCTCATGGTTTATGTGCATGATATGAT 480
consensus_8911#1 ------------------------------------------------------------
consensus_8911#0 TTGATCCGCTTCAATGATCAATGGTGTGTCCAAAGCATTTTATTTGTTTTCGGTCCACTT 540
consensus_8911#1 ------------------------------------------------------------
consensus_8911#0 CGGTATGGATATTGCTAGGTGATGAGTGGTGTCGCTTCTTTGGTGATGCTGGCTGTTATT 600
consensus_8911#1 ------------------------------------------------------------
consensus_8911#0 TCTGCTGAATTTCAACTTAACCATGCAAACTTAAGTTATAGGAGAAATGCTCAAATATTT 660
consensus_8911#1 ------------------------------------------------------------
consensus_8911#0 TATTTCTGTTATTTCGTTAAAAATGTTTGTCATTGTTTCTGGAGCTACTTCCTCCGTTTC 720
consensus_8911#1 ------------------------------------------------------------
consensus_8911#0 ACAACGTAATTCATAAATGTGGGAAATGCTAGAATGACTTACGTTGTGAAACGGATGGAG 780
consensus_8911#1 --------------------------------------------------------GAGC 4
*
consensus_8911#0 TAAATGTTAAATATGCAACCTTCTAATGACAGTTTAGTTGATTTCATTAGAAATATGCAT 840
consensus_8911#1 CAATTATTC--CCCACCGCCNGCCGCCG-CCGTCTACTCGCTCTCGCC-GCCGCCCGC-- 58
** * ** * ** * * * ** ** * * * ** * **
consensus_8911#0 AATGAACTAGGGTTATTGATCCGGTGATTTTACTTGAATAAGGAAACCTTCTAATGACAG 900
consensus_8911#1 ---GACTCCCCCCTCCTCGGCCGCTCGCAC--CCTCGCCGCGTCGACGCTCGATCGCTGT 113
** * * *** * * * * ** ** * *
consensus_8911#0 TTTAGTATGTGCTTATGAATGCTTTGGGTGGTATACAGGTTATTTGCTGTTTTCTTTGCA 960
consensus_8911#1 TCGCGCTTCGCCTCCTCCCAATCCTCTCCGCCATGCATCTAACCCTCGAATT---CGGGG 170
* * * ** * * * ** ** * * * ** *
consensus_8911#0 GAGAAGTGGATGCTTTGTTAGCGCAATAAGCTGGGGGATATCAC-TAAACTTTTG---CA 1016
consensus_8911#1 GAGGGCTGGAGCTGCTCCTGGAGAAGTCCACCAAGGTGCACAAGGTGGACCTCCAGCCCA 230
*** **** * * * * * * * ** * * * ** * **
consensus_8911#0 ATGTCAA--ACTTGAAGGAAATTTAGAAATTCTCTTTCTTTAATTTGTGGACAAAGTTAA 1074
consensus_8911#1 ACGACGGCGATGGGAAGGTCGTGATGAAAGGGTTGCTCGCTTGGGTGAAGTCCAATCTGA 290
* * * * ***** * **** * ** * ** * * ** * *
consensus_8911#0 GTCCATTAGTCTTGATGAGGTGCTTCTTTTCG-TGCTTGCAGAAGGCCTGGTGTTCTCGT 1133
consensus_8911#1 -TCAAGGAGAGGCCG-GAGATGTTCCTCAAGGGTGATTCAGTAAGGCCTGGTGTTCTCGT 348
** * ** *** ** * ** * ** ** ******************
consensus_8911#0 ACTTATAAATGATTGTGACTGGGAGCTATGCGGTGGCCTTGACGCGGAGTTGGAGGAGAA 1193
consensus_8911#1 ACTTATAAATGATTGTGACTGGGAGCTATGCGGTGGCCTTGACGCGGAGTTGGAGGAGAA 408
************************************************************
consensus_8911#0 GGATGTTGTTGTTTTTATCTCCACATTACACGGTGGTTAGTACAACTATTAGGACTACCG 1253
consensus_8911#1 GGATGTTGTTGTTTTTATCTCCACATTACACGGTGGTTAGTACAACTATTAGGACTACCG 468
************************************************************
consensus_8911#0 AAATCACCACTGATATCATGTTGCTAAATGCATCTTGTACCATCAGAAACAGAGGTTGTG 1313
consensus_8911#1 AAATCACCACTGATATCATGTTGCTAAATGCATCTTGTACCATCAGAAACAGAGGTTGTG 528
************************************************************
consensus_8911#0 TGCCATAAATTTCTGGAGAGAATGGATTGTGGAGAGGAATCTGCTGAAGTTGATATGGTC 1373
consensus_8911#1 TGCCATAAATTTCTGGAGAGAATGGATTGTGGAGAGGAATCTGCTGAAGTTGATATGGTC 588
************************************************************
consensus_8911#0 AATTTCTGTAATGAAAAGGCAGTTGTCAGTTATGAATATTCAATATCACA---------- 1423
consensus_8911#1 AATTTCTGTAATGAAAAGGCAGTTGTCAGTTATGAATATTCAATATCACAGATTTGCAGT 648
**************************************************
consensus_8911#0 --------------------
consensus_8911#1 AAAAAAAAAAAAAAAAAAAA 668
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||