These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1403 fasta sequence [GAGGCTCAGGTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGCCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCATTTGGTGCAGTTGTTGTCCGTAATGATGAGATAGTAGTTAGTTGCCATAACATGGTTTTGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGGTAACTTGCCCTGTGTACTGTGGCTACCAGCTACATGGTGTTTACTCTTTACATTTCGTTGATACTTAGCATTCTTTAGTAGTGGCCTCATCTCTGCTGATTAAATGTGCCTGATTCACGCTCTAACTTAAAACTAGAATGCAAATATACTGGACAGCCAAATAGATTCACCTTTTCATTTTGATATTAGTGCCGCAGCTTGAAAAATATACTAGATGTTATCTTCACAAGTTACAACAGCTAGGATGGTGTATGCTTGTCCTTTTCCTTTCATCCTTTGTATCAGAACATCAGAGGTACTCAATTCTAACTATAGAAAAGTGCTGTAAATAGCTATGTTTTGGCAGGTGGTAACTTAAAATACAGAGATCTTATTGGCCTAAAAATTGTTTAGATTCCAGTAAAACAAGGTCATGAGTGAATACAGAAATTCCTAGTTTTTGTTTTGCACTCTCAGAATTTCTTTGGCTGATGGTGTAAATGGAGTAGATAATTTCAAGCTGGCGGATAAAACAACAGAAATGCTTTAAAAAATAAAACAAGCTCTTATTTATTAGGAACAATTCACTGAGACACTGATTGGCAGCAGTATGACTATTGTATTCTTTGCCAGCCAATTTGGGCCGATAATGCATTTAACATTAGTTTCTTTCCATTGTTTGGTTATCTTTTCACATAATAAATGTTTTTCTGTGCTATAGGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGATTAAGAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCTATTGCCATTGGATTCGATGACTTCATTGCTGATGCTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCAATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACTAATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGTTCCAAACGTTCAGAAGTCAGAAAGAATAATGTAACCTTCGGCATTCTGCCATTAGTGGACCATAAGCTATCAATTTAAATATATGTTACTCTCATTATGAGGAAAGA] [+] EMBL AK103800 [GAGGCTCAGGTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGCCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCATTTGGTGCAGTTGTTGTCCGTAATGATGAGATAGTAGTTAGTTGCCATAACATGGTTTTGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGGTAACTTGCCCTGTGTACTGTGGCTACCAGCTACATGGTGTTTACTCTTTACATTTCGTTGATACTTAGCATTCTTTAGTAGTGGCCTCATCTCTGCTGATTAAATGTGCCTGATTCACGCTCTAACTTAAAACTAGAATGCAAATATACTGGACAGCCAAATAGATTCACCTTTTCATTTTGATATTAGTGCCGCAGCTTGAAAAATATACTAGATGTTATCTTCACAAGTTACAACAGCTAGGATGGTGTATGCTTGTCCTTTTCCTTTCATCCTTTGTATCAGAACATCAGAGGTACTCAATTCTAACTATAGAAAAGTGCTGTAAATAGCTATGTTTTGGCAGGTGGTAACTTAAAATACAGAGATCTTATTGGCCTAAAAATTGTTTAGATTCCAGTAAAACAAGGTCATGAGTGAATACAGAAATTCCTAGTTTTTGTTTTGCACTCTCAGAATTTCTTTGGCTGATGGTGTAAATGGAGTAGATAATTTCAAGCTGGCGGATAAAACAACAGAAATGCTTTAAAAAATAAAACAAGCTCTTATTTATTAGGAACAATTCACTGAGACACTGATTGGCAGCAGTATGACTATTGTATTCTTTGCCAGCCAATTTGGGCCGATAATGCATTTAACATTAGTTTCTTTCCATTGTTTGGTTATCTTTTCACATAATAAATGTTTTTCTGTGCTATAGGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGATTAAGAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCTATTGCCATTGGATTCGATGACTTCATTGCTGATGCTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCAATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACTAATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGTTCCAAACGTTCAGAAGTCAGAAAGAATAATGTAACCTTCGGCATTCTGCCATTAGTGGACCATAAGCTATCAATTTAAATATATGTTACTCTCATTATGAGGAAAGA] consensusID : consensus_8913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 721 fasta sequence [GAGGCTCAGGTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGCCGTACAAGAC-AGGGATC-ACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCAT-TTGGTGCA-GTTGTTGTCCGTAATGATGAGATAGTA-GTTAGTTGCCATAACATGGTT-TTGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGA-TTAAGAGGCTGGTG-TATGGAGCCAAGGCAGAAGCTGCTATTGCCA-TTGGATTCGATGACTTCATTGCTGATGCTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCAATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACTAATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGTTCCAAACGTTCAGAAGTCAGAAAGAATAATGTAACCTTCGGCATTCTGCCATTAGTGGACCATAAGCTATCAATTTAAATATATGTTACTCTCANTATGAGGAAAGAAAATTGNTCACTCGAGACT] [+] EMBL AK073655 [GAGGCTCAGGTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGCCGTACAAGAC AGGGATC ACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCAT TTGGTGCA GTTGTTGTCCGTAATGATGAGATAGTA GTTAGTTGCCATAACATGGTT TTGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGA TTAAGAGGCTGGTG TATGGAGCCAAGGCAGAAGCTGCTATTGCCA TTGGATTCGATGACTTCATTGCTGATGCTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCAATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACTAATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGTTCCAAACGTTCAGAAGTCAGAAAGAATAATGTAACCTTCGGCATTCTGCCATTAGTGGACCATAAGCTATCAATTTAAATATATGTTACTCTCATTATGAGGAAAGAAAATTG ] [+] EMBL AK104068 [GAGGCTCGGGTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGCCGTACAAGAC AGGGATC ACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCAT TTGGTGCA GTTGTTGTCCGTAATGATGAGATAGTA GTTAGTTGCCATAACATGGTT TTGGATTATACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGA TTAAGAGGCTGGTG TATGGAGCCAAGGCAGAAGCTGCTATTGCCA TTGGATTCGATGACTTCATTGCTGATGCTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCAATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACTAATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGTTCCAAACGTTCAGAAGTCAGAAAGAATAATGTAACCTTCGGCGTTCTGCCATTAGTGGACCATAAGCTAT ] [+] EMBL CA765405 [ CGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGCCGTACAAGAC AGGGATC ACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCAT TTGGTGCA GTTGTCGTCCGTAATGATGAGATAGTA GTTAGTTGCCATAACATGGTT TTGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGGCTTGCAAAAAGCTTGGAAAAATTGAGAGNTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGA TTAAGAGGCTGGTG TATGGAGCCAAGGCAGAAGCTGCTATTGCCA TTGGATTCGATGACTTCATTGCTGATGCTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCAATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACTAATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGNTCCAAACGTTCAGAAGTCAGAAAGAATAATGTAACCTTCGGCATTCTGCCATTAGTGGACCATAAGCTATCAATTTAAATATATGGTACTCTCANTATGANGNAAGAAAATTGNTC ] [-] EMBL CA762939 [ AGACAAGGGGTC ACAAATTTTTGTCTAAAGCAGTTGAGGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCAT TTGGTGCA GTTGTTGTCCGTAATGATGAGATAGTA GTTAGTTGCCATAACATGGTT TTGGATTACGCTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGA TTAAGAGGCTGGTG TATGGAGCCAAGGCAGAAGCTGCTATTGCCA TTGGATTCGATGACTTCATTGCTGATGCTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCAATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACTAATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGTTCCAAACGTTCAGAAGTCAGAAAGAATAATGTAACCTTCGGCATTCTGCCATTAGTGGACCATAAGCTATCAATTTAAATATATGTTTCTCTCAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACT] [-] EMBL BM929224 [ GATCTACGAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCATCTTGGTGCACGTTGTTGTCCGTAATGATGAGATAGTACGTTAGTTGCCATAACATGGTTCTTGGATTACACTGAGCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGGCTTGCCAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCC ATGTGTTTCGGCGCTGTGCATCTATCACGGACTTAAGAGGCTGGTGCTATGGAGCCAAGGCAGAAGCTGCTATTGCCACTTGGATTCGATGACTTCATTGCTGATGCTTTGAGGGGANCTGCTTACTACCAGAAGGCCCACTTGGAGATAAGGCGGGCAGATGGC ATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8913#0 GAGGCTCAGGTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGT 60 consensus_8913#1 ------------------------------------------------------------ consensus_8913#0 CATCAGGAAGCCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCT 120 consensus_8913#1 ------------------------------------------------------------ consensus_8913#0 TACCAAGGAGTAGATTGTGGCCATGGAGGTCCATTTGGTGCAGTTGTTGTCCGTAATGAT 180 consensus_8913#1 ------------------------------------------------------------ consensus_8913#0 GAGATAGTAGTTAGTTGCCATAACATGGTTTTGGATTACACTGATCCAACTGCGCATGCT 240 consensus_8913#1 ------------------------------------------------------------ consensus_8913#0 GAAGTAACTGCAATAAGAGAGGTAACTTGCCCTGTGTACTGTGGCTACCAGCTACATGGT 300 consensus_8913#1 ------------------------------------------------------------ consensus_8913#0 GTTTACTCTTTACATTTCGTTGATACTTAGCATTCTTTAGTAGTGGCCTCATCTCTGCTG 360 consensus_8913#1 ------------------------------------------------------------ consensus_8913#0 ATTAAATGTGCCTGATTCACGCTCTAACTTAAAACTAGAATGCAAATATACTGGACAGCC 420 consensus_8913#1 ------------------------------------------------------------ consensus_8913#0 AAATAGATTCACCTTTTCATTTTGATATTAGTGCCGCAGCTTGAAAAATATACTAGATGT 480 consensus_8913#1 ------------------------------------------------------------ consensus_8913#0 TATCTTCACAAGTTACAACAGCTAGGATGGTGTATGCTTGTCCTTTTCCTTTCATCCTTT 540 consensus_8913#1 ------------------------------------------------------------ consensus_8913#0 GTATCAGAACATCAGAGGTACTCAATTCTAACTATAGAAAAGTGCTGTAAATAGCTATGT 600 consensus_8913#1 ------------------------------------------------------------ consensus_8913#0 TTTGGCAGGTGGTAACTTAAAATACAGAGATCTTATTGGCCTAAAAATTGTTTAGATTCC 660 consensus_8913#1 ------------------------------------------------------------ consensus_8913#0 AGTAAAACAAGGTCATGAGTGAATACAGAAATTCCTAGTTTTTGTTTTGCACTCTCAGAA 720 consensus_8913#1 ----------------------------------GAGGCTCAGGTTGTGGAATCCAAGGA 26 * * *** ** * ** ** * consensus_8913#0 TTTCTTTGGCTGATGGTGTAAATGGAGTAGATAATTTCAAGCTGGCGGATAAAACAACAG 780 consensus_8913#1 C------GG--AACGATCTCAGTTGCTTCAGCATTT----GCTGGTCATCAGGAAGCCGT 74 ** * * * * * * * * * ** ***** * * * consensus_8913#0 AAATGCTTTAAAAAATAAAACAAGCTCTTATTTATTAGGAACAATTCACTGAGACACTGA 840 consensus_8913#1 ACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGA 134 * * * * * *** *** * * * * * * * ** ** ** consensus_8913#0 TTG-----GCAGCAGTATGACTATTGTATTCTTTGCCAGCCAATTTGGGCCGATAATGCA 895 consensus_8913#1 TTGTGGCCATGGAGGTCCATTTGGTGCAGTTGTTGTCCGTAATGATGAGATAGTAGT-TA 193 *** * ** * ** * * *** * * * ** * ** * * consensus_8913#0 TTTAACATTA-GTTTCTTTCCATTGTTTGGTTATCTTTTCACATAATAAATGTTTTTCTG 954 consensus_8913#1 GTTGCCATAACATGGTTTTGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAA 253 ** *** * * *** *** * * * * *** * ** * * consensus_8913#0 TGCTATAGGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCAT 1014 consensus_8913#1 TAAGAGAGGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCAT 313 * * ****************************************************** consensus_8913#0 CATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGATTAAGAGGCTGG 1074 consensus_8913#1 CATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGATTAAGAGGCTGG 373 ************************************************************ consensus_8913#0 TGTATGGAGCCAAGGCAGAAGCTGCTATTGCCATTGGATTCGATGACTTCATTGCTGATG 1134 consensus_8913#1 TGTATGGAGCCAAGGCAGAAGCTGCTATTGCCATTGGATTCGATGACTTCATTGCTGATG 433 ************************************************************ consensus_8913#0 CTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCA 1194 consensus_8913#1 CTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCA 493 ************************************************************ consensus_8913#0 ATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACT 1254 consensus_8913#1 ATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACT 553 ************************************************************ consensus_8913#0 AATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGTTCCAAACGTTCAGAAGTC 1314 consensus_8913#1 AATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGTTCCAAACGTTCAGAAGTC 613 ************************************************************ consensus_8913#0 AGAAAGAATAATGTAACCTTCGGCATTCTGCCATTAGTGGACCATAAGCTATCAATTTAA 1374 consensus_8913#1 AGAAAGAATAATGTAACCTTCGGCATTCTGCCATTAGTGGACCATAAGCTATCAATTTAA 673 ************************************************************ consensus_8913#0 ATATATGTTACTCTCATTATGAGGAAAGA------------------- 1403 consensus_8913#1 ATATATGTTACTCTCANTATGAGGAAAGAAAATTGNTCACTCGAGACT 721 **************** ************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||