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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8917#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1366 fasta sequence
[CTACTATTTCAGATTCTATTATCCCAACGCCCAACCTGCACACACTTCACTCTCGCTGCTGCGAAACCAGTCACGGGCCACTCACAACCACCACCCTAAACGTAGCTAGCTATTGAGAGAGAGATCGAGGTGGGTGCAATGGCGGCCATGGTGAGACGGCGGCCGTCGCCGGCGGTGACGACGATGCCGGTGGTCCTGGTGGTGGTTGTGTTTGTCGGCGTTGTGGTGGGGGGAGCGAGCGCTTCGGCGGGGCCGCTCAAGGCACACTACTACCGGCACGTGTGCCCGGCGGCGGAGGCGGTGGTGCGCGACATCGTGACGGCGCGCGTCGCCGCCGACCCCGCCGCGCTCCCCG-CCAAGCTGCTCCGCCTCTTCTTCCACGACTGCTTCGTCAGGGGGTGCGACGCGTCGGTGCTGATCGACACGGTGGCCGGGAGCGGCGCCCCTGCGGCCGCCGACAACGACTCTGCACCGAACGGGTCCCTGGGCGGCTACCACGTGATCGACACCGCCAAGGCCGTCCTGGAGGCCGTATGCCCCGGCGTCGTCTCCTGCGCCGACATCGTCGCGCTCGCCGCCAGGGACGCCGTCTCCTACCAGTTTGGGAGGGACCTGTGGGACGTGCAGCTGGGGCGGCGCGACGGCGTGGTGTCGCTGGCGTCGGAGGCGCTGGCGAACCTGCCGGCGCCGTCGGACAACTTCACGACGCTGGAGTCCAACTTCGCCGGCAAGGGCCTCGACGTCAAGGACCTCGTCATCCTCTCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGGGTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGACGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTCTTCGCCTCCGACGCCGCGCTGCTCGCCGACCGCCGCGCCGCCGCGCTCGTCCACGGCCTCACCGACCAGGACTACTTCCTCCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCAGGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAATGATTTTAGTTGGTGATTGAATGATGATGAAATCGTCGTGATCAGTTCATAATTGTGGATTTGTGGATGGATGGAGTTTTTTTTTTTTTTTTCAGATTTTTTGTTTTTTTTTTAACTTTGTTTGTTGTGAGTTTGGTATGGTATAGTGAGAGAGTTCAAAGTAAGGGATATATATATAGCGGTTTAT]
[+] EMBL OSS14569A [CTACTATTTCAGATTCTATTATCCCAACGCCCAACCTGCACACACTTCACTCTCGCTGCTGCGAAACCAGTCACGGGCCACTCACAACCACCACCCTAAACGTAGCTAGCTATTGAGAGAGAGATCGAGGTGGGTGCAATGGCGGCCATGGTGAGACGGCGGCCGTCGCCGGCGGTGACGACGATGCCGGTGGTCCTGGTGGTGGTTGTGTTTGTCGGCGTTGTGGTGGGGGGAGCGAGCGCTTCGGCGGGGCCGCTCAAGGCACACTACTACCGGCACGTGTG CCGGCGGCGGAGGCGGTGGTGCGCGACATCGTGACGGCGTGCGTCGCCGCCGACCCCGCCGNGGTCCCCGNCAAAGTTGCTnc ]
[+] EMBL CB648956 [ ATTCTACCCTCCCAACGCCCAACCTGCACACACTTCACTCTCGCTGCTGCGAAACCAGTCACGGGCCACTCACAACCACCACCCTAAACGTAGCTAGCTATTGAGAGAGAGATCGAGGTGGGTGCAATGGCGGCCATGGTGAGACGGCGGCCGTCGCCGGCGGTGACGACGATGCCGGTGGTCCTGGTGGTGGTTGTGTTTGTCGGCGTTGTGGTGGGGGGAGCGAGCGCTTCGGCGGGGCCGCTCAAGGCACACTACTACCGGCACGTGTGCCCGGCGGCGGAGGCGGTGGTGCGCGACATCGTGACGGCGCGCGTCGCCGCCGACCCCGCCGCGCTCCCCG CCAAGCTGCTCCGCCTCTTCTTCCACGACTGCTTCGTCAGGGGGTGCGACGCGTCGGTGCTGATCGACACGGTGGCCGGGAGCGGCGCCCCTGCGGCCGCCGACAACGACTCTGCACCGAACGGGTCCCTGGGCGGCTACCACGTGATCGACACCGCCA ]
[+] EMBL AK109551 [ GCGAAACCAGTCACGGGCCACTCACAACCACCACCCTAAACGTAGCTAGCTATTGAGAGAGAGATCGAGGTGGGTGCAATGGCGGCCATGGTGAGACGGCGGCCGTCGCCGGCGGTGACGACGATGCCGGTGGTCCTGGTGGTGGTTGTGTTTGTCGGCGTTGTGGTGGGGGGAGCGAGCGCTTCGGCGGGGCCGCTCAAGGCACACTACTACCGGCACGTGTGCCCGGCGGCGGAGGCGGTGGTGCGCGACATCGTGACGGCGCGCGTCGCCGCCGACCCCGCCGCGCTCCCCG CCAAGCTGCTCCGCCTCTTCTTCCACGACTGCTTCGTCAGGGGGTGCGACGCGTCGGTGCTGATCGACACGGTGGCCGGGAGCGGCGCGGCGGCGGCGGCGGAGAAGGACGCGGCGCCGAACGGGTCGCTGGGCGGGTACGACGTGATCGACACCGCCAAGGCCGTCCTGGAGGCCGTATGCCCCGGCGTCGTCTCCTGCGCCGACATCGTCGCGCTCGCCGCCAGGGACGCCGTCTCCTACCAGTTTGGGAGGGACCTGTGGGACGTGCAGCTGGGGCGGCGCGACGGCGTGGTGTCGCTGGCGTCGGAGGCGCTGGCGAACCTGCCGGCGCCGTCGGACAACTTCACGACGCTGGAGTCCAACTTCGCCGGCAAGGGCCTCGACGTCAAGGACCTCGTCATCCTCTCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGGGTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGACGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTCTTCGCCTCCGACGCCGCGCTGCTCGCCGACCGCCGCGCCGCCGCGCTCGTCCACGGCCTCACCGACCAGGACTACTTCCTCCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCAGGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAATGATTTTAGTTGGTGATTGAATGATGATGAAATCGTCGTGATCAGTTCATAATTGTGGATTTGTGGATGGATGGAGTTTTTTTTTTTTTTTTCAGATTTTTTGTTTTTTTTTTAACTTTGTTTGTTGTGAGTTTGGTATGGTATAGTGAGAGAGTTCAAAGTAAGGGATATATATATAGCGGTTTAT]
consensusID : consensus_8917#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 544 fasta sequence
[TTTTTTATTTTTGGTAAAATACAAAATTTTAAACCAATTCAATTCAACCTACAAACTTCATATTCGACTTACATATGAAATCTGGAGCTAATTTAATTTCTACCCCGCAAATTCGCCGC-ACCTGCACGCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGGGTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGACGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTNTTCGCCTCCGACGCCGCGCTGCTCGCCGACCGCCGGGCCGCCGCGCTCGTNCACGGGCTNACCGACCAGGACTACTTCCTCCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCAGGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAA]
[-] EMBL AU173784 [TTTTTTATTTTTGGTAAAATACAAAATTTTAAACCAATTCAATTCAACCTACAAACTTCATATTCGACTTACATATGAAATCTGGAGCTAATTTAATTTCTACCCCGCAAATTCGCCGC ACCTGCACGCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGGGTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGACGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTNTTCGCCTCCGACGCCGCGCTGCTCGCCGACCGCCGGGCCGCCGCGCTCGTNCACGGGCTNACCGACCAGGA ]
[-] EMBL AU091793 [TTTTTTATTTTTGGTAAAATACAAAATTTTAAACCAATTCAATTCAACCTACAAACTTCATATTCGACTTACATATGAAATCTGGAGCTAATTTAATTTCTACCCCGCAAATTCGCCGCGACCTGCACGCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTNCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCNGCC ]
[-] EMBL AU173783 [ CGC ACCTGCACGCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGGGTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGACGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTCTTCGCCTCCGACGCCGCGCTGCTCGCCGACCGCCGCGCCGCCGCGCTCGTCCACGGCCTCACCGACCAGGACTACTTCCTCCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCAGGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8917#0 CTACTATTTCAGATTCTATTATCCCAACGCCCAACCTGCACACACTTCACTCTCGCTGCT 60
consensus_8917#1 ------------------------------------------------------------
consensus_8917#0 GCGAAACCAGTCACGGGCCACTCACAACCACCACCCTAAACGTAGCTAGCTATTGAGAGA 120
consensus_8917#1 ------------------------------------------------------------
consensus_8917#0 GAGATCGAGGTGGGTGCAATGGCGGCCATGGTGAGACGGCGGCCGTCGCCGGCGGTGACG 180
consensus_8917#1 ------------------------------------------------------------
consensus_8917#0 ACGATGCCGGTGGTCCTGGTGGTGGTTGTGTTTGTCGGCGTTGTGGTGGGGGGAGCGAGC 240
consensus_8917#1 ------------------------------------------------------------
consensus_8917#0 GCTTCGGCGGGGCCGCTCAAGGCACACTACTACCGGCACGTGTGCCCGGCGGCGGAGGCG 300
consensus_8917#1 ------------------------------------------------------------
consensus_8917#0 GTGGTGCGCGACATCGTGACGGCGCGCGTCGCCGCCGACCCCGCCGCGCTCCCCGCCAAG 360
consensus_8917#1 ------------------------------------------------------------
consensus_8917#0 CTGCTCCGCCTCTTCTTCCACGACTGCTTCGTCAGGGGGTGCGACGCGTCGGTGCTGATC 420
consensus_8917#1 ------------------------------------------------------------
consensus_8917#0 GACACGGTGGCCGGGAGCGGCGCCCCTGCGGCCGCCGACAACGACTCTGCACCGAACGGG 480
consensus_8917#1 ------------------------------------------------------------
consensus_8917#0 TCCCTGGGCGGCTACCACGTGATCGACACCGCCAAGGCCGTCCTGGAGGCCGTATGCCCC 540
consensus_8917#1 ------------------------------------------------------------
consensus_8917#0 GGCGTCGTCTCCTGCGCCGACATCGTCGCGCTCGCCGCCAGGGACGCCGTCTCCTACCAG 600
consensus_8917#1 ------------------------------------------------------------
consensus_8917#0 TTTGGGAGGGACCTGTGGGACGTGCAGCTGGGGCGGCGCGACGGCGTGGTGTCGCTGGCG 660
consensus_8917#1 -----------------TTTTTTATTTTTGGTAAAATACAAAATTTTAAACCAATTCAAT 43
* *** * * * *
consensus_8917#0 TCGGAGGCGCTGGCGAACCTGCCGGCGCCGTCGGACAACTTCACGACGCTGGAGTCCAAC 720
consensus_8917#1 TCAA-----CCTACAAACTT-----CATATTCGACTTACATATGAAATCTGGAG-CTAAT 92
** * * *** * * *** ** * * ****** * **
consensus_8917#0 TTCGCCGGCAAGGGCCTCGACGTCAAGGACCTCGT-CATCCTCTCAGGGGCGCACACCAT 779
consensus_8917#1 TTAATTTCTA----CCCCG----CAAATTCGCCGCACCTGCACGCAGGGGCGCACACCAT 144
** * ** ** *** * ** * * * * ****************
consensus_8917#0 CGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGC 839
consensus_8917#1 CGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGC 204
************************************************************
consensus_8917#0 GCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGG 899
consensus_8917#1 GCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGG 264
************************************************************
consensus_8917#0 GTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGA 959
consensus_8917#1 GTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGA 324
************************************************************
consensus_8917#0 CGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTCTTCGCCTCCGACGCCGCGCT 1019
consensus_8917#1 CGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTNTTCGCCTCCGACGCCGCGCT 384
*************************************** ********************
consensus_8917#0 GCTCGCCGACCGCCGCGCCGCCGCGCTCGTCCACGGCCTCACCGACCAGGACTACTTCCT 1079
consensus_8917#1 GCTCGCCGACCGCCGGGCCGCCGCGCTCGTNCACGGGCTNACCGACCAGGACTACTTCCT 444
*************** ************** ***** ** ********************
consensus_8917#0 CCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCA 1139
consensus_8917#1 CCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCA 504
************************************************************
consensus_8917#0 GGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAATGATTTTAGTTGGTGATTGA 1199
consensus_8917#1 GGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAA-------------------- 544
****************************************
consensus_8917#0 ATGATGATGAAATCGTCGTGATCAGTTCATAATTGTGGATTTGTGGATGGATGGAGTTTT 1259
consensus_8917#1 ------------------------------------------------------------
consensus_8917#0 TTTTTTTTTTTTCAGATTTTTTGTTTTTTTTTTAACTTTGTTTGTTGTGAGTTTGGTATG 1319
consensus_8917#1 ------------------------------------------------------------
consensus_8917#0 GTATAGTGAGAGAGTTCAAAGTAAGGGATATATATATAGCGGTTTAT 1366
consensus_8917#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||