Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8926 cluster # 8926       Sequences # 6       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8926#0 length = 1017 sequences # 6  
consensusID : consensus_8926#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1017
fasta sequence 
                              [CACACAGGTTAAGTCACTTTCACCTGCAAATCCACAAGCACATTGCTCGATCACCGAGGAAGAAAACTAGCTAGCTTAATCA-CCGGGAAGAGTTGAGCAATGGCGGCAGGATTGCAGGTGTTCGGCCAGCCGGCGTCCACCGACGTCGCGAGGGTCCTGACCTGTCTCTTCGAGAAGAACCTCGAGTTCGAGCTCATCCGCATAGACACCTTCAAGAAGGAGCACAAGCTCCCCGAGTTCATCAAGCTACGGGATCCGACCGGGCAGGTGACTTTCAAGCATGGCGACAAGACTCTTGTTGATTCAAGAGCGATATGCCGATACCTGAGCACTCAGTTCCCAGACGACGGGAACAGGACGATCTACGGGACGGGGTCGCTGGAGCGGGCGTCGATCGAGCAGTGGCT-GCAGGCGGAGGCGCAGAGCTTCGACGCGCCGAGC-TCGGAGCTGGT-GTTCCACCTGGCGTTCGCGCCGCAGC-TCAACATACC-GGCCGACGAGGCCCGCATCGCGGAGAACGAGC-GGAAGCTGC-AGC-AG-ATGCTGAACGTGTACGACGAGATCCTGGCGAAGAACAAGTACCTCGCCGGCGACGAGTTCACCCTGGCCGACCTGTCCCACCTCCCGAACTCCCACTACATCGTCAACGCGCGGTCGCCGAGGGGCAAGAAGCTCTTCACCTCCAAGAAGCACGTCGCGAGGTGGTACGAGGAGATCTCCAACCGCGCCTCCTGGAAGCAGGTGGTCAAGATGCAGAGCGAGCACCCTGGCGCGTTCGAGTGATATGCGCACGCGCAGCTCAAAAACTCTCTTGCATTCTGCGGCGAGCTCTGCTTTGTCTCGTCCACGGCTTTAATTCGTCGGGCTTCATGCAGTGATGTGGTTGTCGTCTACGTTAATTGTCGTTTCGGCTAAGAATAATATGAAGCCTTCTTGAGGTCTCCTCTCAGTGTATTCCTTTTGCAACGCCATGTCTTTCGATTCAATAAATATAAATGTGTCCCAGCCTTTTTTGCTCAAAAA]

[+] EMBL AK059955             [CACACAGGTTAAGTCACTTTCACCTGCAAATCCACAAGCACATTGCTCGATCACCGAGGAAGAAAACTAGCTAGCTTAATCA CCGGGAAGAGTTGAGCAATGGCGGCAGGATTGCAGGTGTTCGGCCAGCCGGCGTCCACCGACGTCGCGAGGGTCCTGACCTGTCTCTTCGAGAAGAACCTCGAGTTCGAGCTCATCCGCATAGACACCTTCAAGAAGGAGCACAAGCTCCCCGAGTTCATCAAGCTACGGGATCCGACCGGGCAGGTGACTTTCAAGCATGGCGACAAGACTCTTGTTGATTCAAGAGCGATATGCCGATACCTGAGCACTCAGTTCCCAGACGACGGGAACAGGACGATCTACGGGACGGGGTCGCTGGAGCGGGCGTCGATCGAGCAGTGGCT GCAGGCGGAGGCGCAGAGCTTCGACGCGCCGAGC TCGGAGCTGGT GTTCCACCTGGCGTTCGCGCCGCAGC TCAACATACC GGCCGACGAGGCCCGCATCGCGGAGAACGAGC GGAAGCTGC AGC AG ATGCTGAACGTGTACGACGAGATCCTGGCGAAGAACAAGTACCTCGCCGGCGACGAGTTCACCCTGGCCGACCTGTCCCACCTCCCGAACTCCCACTACATCGTCAACGCGCGGTCGCCGAGGGGCAAGAAGCTCTTCACCTCCAAGAAGCACGTCGCGAGGTGGTACGAGGAGATCTCCAACCGCGCCTCCTGGAAGCAGGTGGTCAAGATGCAGAGCGAGCACCCTGGCGCGTTCGAGTGATATGCGCACGCGCAGCTCAAAAACTCTCTTGCATTCTGCGGCGAGCTCTGCTTTGTCTCGTCCACGGCTTTAATTCGTCGGGCTTCATGCAGTGATGTGGTTGTCGTCTACGTTAATTGTCGTTTCGGCTAAGAATAATATGAAGCCTTCTTGAG                                                                                     ]
[+] EMBL CF308988             [ ACACAGGTTAAGTCACTTTCACCTGCAAATCCACAAGCACATTGCTCGATCACCGAGGAAGAAAACTAGCTAGCTTAATCA CCGGGAAGAGTTGAGCAATGGCGTCAGGATTGCAGGTGTTCGGCCAGCCGGCGTCCACCGACGTCGCGAGGGTCCTGACCTGTCTCTTCGAGAAGAACCTCGAGTTCGAGCTCATCCGCATAGACACCTTCAAGAAGGAGCACAAGCTCCCCGAGTTCATCAAGCTACGGGATCCGACCGGGCAGGTGACTTTCAAGCATGGCGACAAGACTCTTGTTGATTCAAGAGCGATATGCCGATACCTGAGCACTCAGTTCCCAGACGACGGGAACAGGACGATCTACGGGACGGGGTCGCTGGAGCGGGCGTCGATCGAGCAGTGGCT GCAGGCGGAGGCGCAGAGCTTCGACGCGCCGAGC TCGGAGCTGGT GTTCCACCTGGCGTTCGCGCCGCAGC TCAACATACC GGCCGACGAGGCCCGCATCGCGGAGAACGAGC GGAAGCTGC AGC AG ATGCTGAACGTGTACGACGAGATCCTGGCGAAGAACAAGTACCTCGCCGGCGACGAGTTCACCCTGGC                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF305371             [  CACAGGTTAAGTCACTTTCACCTGCAAATCCACAAGCACATTGCTCGATCACCGAGGAAGAAAACTAGCTAGCTTAATCA CCGGGAAGAGTTGAGCAATGGCGGCAGGATTGCAGGTGTTCGGCCAGCCGGCGTCCACCGACGTCGCGAGGGTCCTGACCTGTCTCTTCGAGAAGAACCTCGAGTTCGAGCTCATCCGCATAGACACCTTCAAGAAGGAGCACAAGCTCCCCGAGTTCATCAAGCTACGGGATCCGACCGGGCAGGTGACTTTCAAGCATGGCGACAAGACTCTTGTTGATTCAAGAGCGATATGCCGATACCTGAGCACTCAGTTCCCAGACGACGGGAACAGGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA997962             [                 TTTCACCTGCAAATCCACAAGCACATTGCTCGATCACCGAGGAAGAAAACTAGCTAGCTTAATCA CCGGGAAGAGTTGAGCAATGGCGGCAGGATTGCAGGTGTTCGGCCAGCCGGCGTCCACCGACGTCGCGAGGGTCCTGACCTGTCTCTTCGAGAAGAACCTCGAGTTCGAGCTCATCCGCATAGACACCTTCAAGAAGGAGCACAAGCTCCCCGAGTTCATCAAGCTACGGGATCCGACCGGGCAGGTGACTTTCAAGCATGGCGACAAGACTCTTGTTGATTCAAGAGCGATATGCCGATACCTGAGCACTCAGTTCCCAGACGACGGGAACAGGACGATCTACGGGACGGGGTCGCTGGAGCGGGCGTCGATCGAGCAGTGGCT GCAGGCGGAGGCGCAGAGCTTCGACGCGCCGAGC TCGGAGCTGGT GTTCCACCTGGCGTTCGCGCCGCAGC TCAACATACC GGCCGACGAGGCCCGCATCGCGGAGAACGAGC GGAAGCTGC AGC AG ATGCTGAACGTGTACGACGAGATCCTGGCGAAGAACAAGT CCTCGCCGGCGACGAGTTCACCCTGGCCGACCTGTCCCACCTTCCG ACTCCCACTACATCGTCAACGCGCGGTCGCCGAGGGGCAAGA                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CA754600             [                  TTCACCTGCAAATCCACAAGCACATTGCTCGATCACCGAGGAAGAAAACTAGCTAGCTTAATCACCCGGGAAGAGTTGAGCAATGGCGGCAGGATTGCAGGTGTTCGGCCAGCCGGCGTCCACCGACGTCGCGAGGGTCCTGACCTGTCTCTTCGAGAAGAACCTCGAGTTCGAGCTCATCCGCATAGACACCTTCAAGAAGGAGCACAAGCTCCCCGAGTTCATCAAGCTACGGGATCCGACCGGGCAGGTGACTTTCAAGCATGGCGACNAGACTCTTGTTGATTCAAGAGCGATATGCCGATACCTGAGCACTCAGTTCCCAGACGACGGGAACAGGACGATCTACGGGACGGGGTCGCTGGAGCGGGCGTCGATCGAACAGTGGCTGGCA GCGGAAGCGCAGAACTTCGACGCGCCCAGCTTCGGAGCTGGTGGTTCACCCGGGCGTTCGCGGCGCAAC TCCACATACCGGGCCGACGAGGCCCGCATCGCGGAGAACGAAC GGAAGCTGC AGC AG ATGCTGAACGTGTACCACAAGATCCTGGCGAA AACAAGTACCTCCCCGGCGA GAGTTCACCCTGGGCGACCGGT CCACCTCCGGAA                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM037785             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          cCCGCAGCTTCAACATACC GGCCGACGAGGCCCGCATCGCGGAGAACGAGCGGGAAGCTGCAAGCAAGAATGCTGAACGTGTACGACGAGATCCTGGCGAAGAACAAGTACCTCGCCGGCGACGAGTTCACCCTGGCCGACCTGTCCCACCTCCCGAACTCCCACTACATCGTCAACGCGCGGTCGCCGAGGGGCAAGAAGCTCTTCACCTCCAAGAAGCACGTCGCGAGGTGGTACGAGGAGATCTCCAACCGCGCCTCCTGGAAGCAGGTGGTCAAGATGCAGAGCGAGCACCCTGGCGCGTTCGAGTGATATGCGCACGCGCAGCTCAAAAACTCTCTTGCATTCTGCGGCGAGCTCTGCTTTGTCTCGTCCACGGCTTTAATTCGTCGGGCTTCATGCAGTGATGTGGTTGTCGTCTACGTTAATTGTCGTTTCGGCTAAGAATAATATGAAGCCTTCTTGAGGTCTCCTCTCAGTGTATTCCTTTTGCAACGCCATGTCTTTCGATTCAATAAATATAAATGTGTCCCAGCCTTTTTTGCTCAAAAA]




>consensus_8926#0
CACACAGGTTAAGTCACTTTCACCTGCAAATCCACAAGCACATTGCTCGATCACCGAGGA
AGAAAACTAGCTAGCTTAATCACCGGGAAGAGTTGAGCAATGGCGGCAGGATTGCAGGTG
TTCGGCCAGCCGGCGTCCACCGACGTCGCGAGGGTCCTGACCTGTCTCTTCGAGAAGAAC
CTCGAGTTCGAGCTCATCCGCATAGACACCTTCAAGAAGGAGCACAAGCTCCCCGAGTTC
ATCAAGCTACGGGATCCGACCGGGCAGGTGACTTTCAAGCATGGCGACAAGACTCTTGTT
GATTCAAGAGCGATATGCCGATACCTGAGCACTCAGTTCCCAGACGACGGGAACAGGACG
ATCTACGGGACGGGGTCGCTGGAGCGGGCGTCGATCGAGCAGTGGCTGCAGGCGGAGGCG
CAGAGCTTCGACGCGCCGAGCTCGGAGCTGGTGTTCCACCTGGCGTTCGCGCCGCAGCTC
AACATACCGGCCGACGAGGCCCGCATCGCGGAGAACGAGCGGAAGCTGCAGCAGATGCTG
AACGTGTACGACGAGATCCTGGCGAAGAACAAGTACCTCGCCGGCGACGAGTTCACCCTG
GCCGACCTGTCCCACCTCCCGAACTCCCACTACATCGTCAACGCGCGGTCGCCGAGGGGC
AAGAAGCTCTTCACCTCCAAGAAGCACGTCGCGAGGTGGTACGAGGAGATCTCCAACCGC
GCCTCCTGGAAGCAGGTGGTCAAGATGCAGAGCGAGCACCCTGGCGCGTTCGAGTGATAT
GCGCACGCGCAGCTCAAAAACTCTCTTGCATTCTGCGGCGAGCTCTGCTTTGTCTCGTCC
ACGGCTTTAATTCGTCGGGCTTCATGCAGTGATGTGGTTGTCGTCTACGTTAATTGTCGT
TTCGGCTAAGAATAATATGAAGCCTTCTTGAGGTCTCCTCTCAGTGTATTCCTTTTGCAA
CGCCATGTCTTTCGATTCAATAAATATAAATGTGTCCCAGCCTTTTTTGCTCAAAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)