These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1100 fasta sequence [TTCAGTAAATTAAATATATAGTATATAAGAATTATTATTATACCCATCAGGTTCGCCCATGTCAAGCTTATTTTTTCACCGGACACACACACACCACAAGGATAAGCCTTTACCGGTACGACACCTGTGCAAGAACACGCCACGTCACACACATACACACGAACACAGATGCTGACTGGGCGAATGACGTGTCCGTTTTCGACAGATCATCATCCTCATCGTCATCGTCTCTCTTATCTTTTCTACGGGTTAACGTAGACGTCGAGCTCGAGCAGGTCAGGGCGGATGGTCCTCCACAGCACGTACCCTCTCGCCATCCTGAACTGCCCCGTGCCCCCCACCACCGTCAGCTCCCGCACCGCCGCGCCGGTGTCGTCGCGCCCGACGACGGTCACCGAGCTGCCGGCGAACGGGCCGGAGCTGAGAACGACGTTCATGGTGACCATCAGGTCCATGCTCCCCGTCGACGCCACGATGTACTGCCCCTGGGCGCGCCCCAGCACCGACGACGTCGCCGCGGGTCCCTCCGTCAGCACGTCGTCCATCACCACCGTGTTCCCGAACATGCCGCGCGGGCCCCGCACCACCTGCACCGCCGACGCGCCCAGCACGTCGTGCATGTAGAAGTGGAGGTGCGCCGACGCCGCGTCCGCCACCGGCGGCCCCGCGGCGAGCGCCGCGGCGAGGACGACGACGCAGAGCGGGACGAACACCTTGGGCGCCATTTCAATCGGGATTAGATGGAGGAATGGATTGATGGTGAGGAGAGGACTGCATTGATGCTGCTGATTATATAGCAACGGACACTGTAGTAGCTGCTGCGATTGCATCTGTACAACTGTAGGACATAATTTTTGGTCCTGATTAGACTTTTTTCTTTCTTGTGTGTATGGTGACAGGTTGTGGCCGTTGAGGTGTATGATTGTGATCTTCGCTGTACCTGTCTGAGTGACAGCAACGGTGGCCATGGATGCAGATCACATCAATTCCATTGGGAAATACTTTTCAGCCTTAAGAGGGATATCTTTGTCTCGCCTAACTGTAGAGGCCCAAGATGTAATTAATTTTCATTCTTTTTCAGAGAAGGACATCCTCTCAAT] [-] EMBL AK062734 [TTCAGTAAATTAAATATATAGTATATAAGAATTATTATTATACCCATCAGGTTCGCCCATGTCAAGCTTATTTTTTCACCGGACACACACACACCACAAGGATAAGCCTTTACCGGTACGACACCTGTGCAAGAACACGCCACGTCACACACATACACACGAACACAGATGCTGACTGGGCGAATGACGTGTCCGTTTTCGACAGATCATCATCCTCATCGTCATCGTCTCTCTTATCTTTTCTACGGGTTAACGTAGACGTCGAGCTCGAGCAGGTCAGGGCGGATGGTCCTCCACAGCACGTACCCTCTCGCCATCCTGAACTGCCCCGTGCCCCCCACCACCGTCAGCTCCCGCACCGCCGCGCCGGTGTCGTCGCGCCCGACGACGGTCACCGAGCTGCCGGCGAACGGGCCGGAGCTGAGAACGACGTTCATGGTGACCATCAGGTCCATGCTCCCCGTCGACGCCACGATGTACTGCCCCTGGGCGCGCCCCAGCACCGACGACGTCGCCGCGGGTCCCTCCGTCAGCACGTCGTCCATCACCACCGTGTTCCCGAACATGCCGCGCGGGCCCCGCACCACCTGCACCGCCGACGCGCCCAGCACGTCGTGCATGTAGAAGTGGAGGTGCGCCGACGCCGCGTCCGCCACCGGCGGCCCCGCGGCGAGCGCCGCGGCGAGGACGACGACGCAGAGCGGGACGAACACCTTGGGCGCCATTTCAATCGGGATTAGATGGAGG ] [+] EMBL AK119964 [ GGCGGATGGTCCTCCACAGCACGTACCCTCTCGCCATCCTGAACTGCCCCGTGCCCCCCACCACCGTCAGCTCCCGCACCGCCGCGCCGGTGTCGTCGCGCCCGACGACGGTCACCGAGCTGCCGGCGAACGGGCCGGAGCTGAGAACGACGTTCATGGTGACCATCAGGTCCATGCTCCCCGTCGACGCCACGATGTACTGCCCCTGGGCGCGCCCCAGCACCGACGACGTCGCCGCGGGTCCCTCCGTCAGCACGTCGTCCATCACCACCGTGTTCCCGAACATGCCGCGCGGGCCCCGCACCACCTGCACCGCCGACGCGCCCAGCACGTCGTGCATGTAGAAGTGGAGGTGCGCCGACGCCGCGTCCGCCACCGGCGGCCCCGCGGCGAGCGCCGCGGCGAGGACGACGACGCAGAGCGGGACGAACACCTTGGGCGCCATTTCAATCGGGATTAGATGGAGGAATGGATTGATGGTGAGGAGAGGACTGCATTGATGCTGCTGATTATATAGCAACGGACACTGTAGTAGCTGCTGCGATTGCATCTGTACAACTGTAGGACATAATTTTTGGTCCTGATTAGACTTTTTTCTTTCTTGTGTGTATGGTGACAGGTTGTGGCCGTTGAGGTGTATGATTGTGATCTTCGCTGTACCTGTCTGAGTGACAGCAACGGTGGCCATGGATGCAGATCACATCAATTCCATTGGGAAATACTTTTCAGCCTTAAGAGGGATATCTTTGTCTCGCCTAACTGTAGAGGCCCAAGATGTAATTAATTTTCATTCTTTTTCAGAGAAGGACATCCTCTCAAT] [-] EMBL CF195962 [ nacncnnnCAGCACGTCGTGCATGTAGAAGTGGAGGTGCGCCGACGCCGCGTCCGCCACCGGCGGCCCCGCGGCGAGCGCCGCGGCGAGGACGACGACGCAGAGCGGGACGAACACCTTGGGCGCCnnnnnaa ] consensusID : consensus_8929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [CACACCACAAGGATAAGCCTTTACCGGTACGACACCTGTGCAAGAACACGCCACGTCACACACATACACACGAACACAGATGCTGACTGGGCGAATGACGTGTCCGTTTTCGACAGATCATCATCCTCATCGTCATCGTCTCTCTTATCTTTTCTACGGGTTAACGTAGACGTCGAGCTCGAGCAGGTCAGGGCGGATGGTCCTCCACAGCACGTACCCTCTCGCCATCCTGAACTGCCCCGTGCCCCCCACCACCGTCAGCTCCCGCACCGCCGCGCCGTTTCGTTCGCGCCCGAGAGGTTCACCGAGCTCCGGCGAACGGCCGTAGCTGAGAGCGCCNTATTCGTAGCCGGGGACTGTTTTATATTTCCAAGTAGGGTCTTTTATTCGGATTACCCGTTCGACCTTGGAGGGGGGCCCGNTACCATTCGCCTATGTGAGTCTTTAA] [+] EMBL OS37943 [CACACCACAAGGATAAGCCTTTACCGGTACGACACCTGTGCAAGAACACGCCACGTCACACACATACACACGAACACAGATGCTGACTGGGCGAATGACGTGTCCGTTTTCGACAGATCATCATCCTCATCGTCATCGTCTCTCTTATCTTTTCTACGGGTTAACGTAGACGTCGAGCTCGAGCAGGTCAGGGCGGATGGTCCTCCACAGCACGTACCCTCTCGCCATCCTGAACTGCCCCGTGCCCCCCACCACCGTCAGCTCCCGCACCGCCGCGCCGTTTCGTTCGCGCCCGAGAGGTTCACCGAGCTCCGGCGAACGGCCGTAGCTGAGAGCGCCNTATTCGTAGCCGGGGACTGTTTTATATTTCCAAGTAGGGTCTTTTATTCGGATTACCCGTTCGACCTTGGAGGGGGGCCCGNTACCATTCGCCTATGTGAGTCTTTAA] consensusID : consensus_8929#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [TTTTTTTCAGTAANATGAAATATATAGTATATAAGAATTATTATTATACCCATCAGGTTCGCCATGTCAAGCTTATTTTTCACCGGACACACACACACCACAAGGATAAGCCTTTACCGGTACGACACCTGTGCAATGAACACGCCACGTCACACACATACACACGGACACAGATGCTGACTGGGCGAATGACGTGTCCGTTTTCGACAGATCATCATCCTCATCGTACATCGTATCTCTTATCTTTTCTACGGGTTANACGTACGACGTCGAGCTCGAGCAGGTCAGGGCAGGATGGTCCTCNCACAGGAACAGTACCCATCTACAGNCACATCCTGAAAGAACCCGNGCANACANAAAACACCAGGACAGATACCCAGCACACGA] [-] EMBL BI807076 [TTTTTTTCAGTAANATGAAATATATAGTATATAAGAATTATTATTATACCCATCAGGTTCGCCATGTCAAGCTTATTTTTCACCGGACACACACACACCACAAGGATAAGCCTTTACCGGTACGACACCTGTGCAATGAACACGCCACGTCACACACATACACACGGACACAGATGCTGACTGGGCGAATGACGTGTCCGTTTTCGACAGATCATCATCCTCATCGTACATCGTATCTCTTATCTTTTCTACGGGTTANACGTACGACGTCGAGCTCGAGCAGGTCAGGGCAGGATGGTCCTCNCACAGGAACAGTACCCATCTACAGNCACATCCTGAAAGAACCCGNGCANACANAAAACACCAGGACAGATACCCAGCACACGA] consensusID : consensus_8929#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence [GACGGCCGAGCTGAGAACGACGTTATGGTGACCATCAGGTCCATGCTCCCCGTCGACGCCACGATGTACTGCCACTGGCGCGCCCCAGCACCGACGACGTCGCCGCGGGTCCCATCCGTCAGCACGTCGTCAATCACCACCGTGTTCCCGAACATGCCGCGCGGGCCCCGCACCACCTGCACCGCCGACGCGCCCACACGTCGTGCATGTAGAAGTGAAGGTGCGCCGACGCCCGTCGCCACCCGAGCCCCGCGAGGANACGACCAGAGCGGNACGAACACCTTGGGCGCNATTTCAATCGGGATTTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGTTGTCTCTTGC] [-] EMBL OS38000 [GACGGCCGAGCTGAGAACGACGTTATGGTGACCATCAGGTCCATGCTCCCCGTCGACGCCACGATGTACTGCCACTGGCGCGCCCCAGCACCGACGACGTCGCCGCGGGTCCCATCCGTCAGCACGTCGTCAATCACCACCGTGTTCCCGAACATGCCGCGCGGGCCCCGCACCACCTGCACCGCCGACGCGCCCACACGTCGTGCATGTAGAAGTGAAGGTGCGCCGACGCCCGTCGCCACCCGAGCCCCGCGAGGANACGACCAGAGCGGNACGAACACCTTGGGCGCNATTTCAATCGGGATTTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGTTGTCTCTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8929#0 TTCAGTAAATTAAATATATAGTATATAAGAATTATTATTATACCCATCAGGTTCGCCCAT 60 consensus_8929#3 ------------------------------------------------------------ consensus_8929#1 ------------------------------------------------------------ consensus_8929#2 ------------------------------------------------------------ consensus_8929#0 GTCAAGCTTATTTTTTCACCGGACACACACACACCACAAGGATAAGCCTTTACCGGTACG 120 consensus_8929#3 ------------------------------------------------------------ consensus_8929#1 ------------------------------------------------------------ consensus_8929#2 ------------------------------------------------------------ consensus_8929#0 ACACCTGTGCAAGAACACGCCACGTCACACACATACACACGAACACAGATGCTGACTGGG 180 consensus_8929#3 ------------------------------------------------------------ consensus_8929#1 ------------------------------------------------------------ consensus_8929#2 ------------------------------------------------------------ consensus_8929#0 CGAATGACGTGTCCGTTTTCGACAGATCATCATCCTCATCGTCATCGTCTCTCTTATCTT 240 consensus_8929#3 ------------------------------------------------------------ consensus_8929#1 ------------------------------------------------------------ consensus_8929#2 ------------------------------------------------------------ consensus_8929#0 TTCTACGGGTTAACGTAGACGTCGAGCTCGAGCAGGTCAGGGCGGATGGTCCTCCACAGC 300 consensus_8929#3 ------------------------------------------------------------ consensus_8929#1 ------------------------------------------------------------ consensus_8929#2 ------------------------------------------------------------ consensus_8929#0 ACGTACCCTCTCGCCATCCTGAACTGCCCCGTGCCCCCCACCACCGTCAGCTCCCGCACC 360 consensus_8929#3 ------------------------------------------------------------ consensus_8929#1 ------------------------------------------------------------ consensus_8929#2 ---------------------------------------TTTTTTTCAGTAANATGAAAT 21 consensus_8929#0 GCCGCGCCGGTGTCGTCGCGCCCGACGACGGTCACCGAGCTGCCGGCGAACGGGCCGGAG 420 consensus_8929#3 ------------------------------------------------GACGG--CCGAG 10 consensus_8929#1 ------------------------------------------------------------ consensus_8929#2 ATATAGTATATAAGAATTATTATTATACCCATCAGGTTCGCCATGTCAAGCTTATTTTTC 81 consensus_8929#0 CTGAGAACGACGTTCATGGTGACCATCAGGTCCATGCTCCCCGTCGACGCCACGATGTAC 480 consensus_8929#3 CTGAGAACGACGTT-ATGGTGACCATCAGGTCCATGCTCCCCGTCGACGCCACGATGTAC 69 consensus_8929#1 ------------CACACCACAAGGATAAGCCTTTACCGGTACGACACCTGTGCAA-GAAC 47 consensus_8929#2 ACCGGACACACACACACCACAAGGATAAGCCTTTACCGGTACGACACCTGTGCAATGAAC 141 * * ** ** * ** * * * * * ** consensus_8929#0 -TGCCCCTGGGCGCGCCCCAGCACCGACGACGTCGCCGCGGGTCCC-TCCGTCAGCACGT 538 consensus_8929#3 -TGCCACTGG-CGCGCCCCAGCACCGACGACGTCGCCGCGGGTCCCATCCGTCAGCACGT 127 consensus_8929#1 ACGCCACGTCACACACATACACACGAACACAGATGCTGACTGGGCGAATGACGTGTCCGT 107 consensus_8929#2 ACGCCACGTCACACACATACACACGGACACAGATGCTGACTGGGCGAATGACGTGTCCGT 201 *** * * * * *** ** * ** * * * * *** consensus_8929#0 CGTCCATCACCACCGTGTTCCCGAACATGCCGCGCGGGCCCCGCACCACCTGCACCGCCG 598 consensus_8929#3 CGTCAATCACCACCGTGTTCCCGAACATGCCGCGCGGGCCCCGCACCACCTGCACCGCCG 187 consensus_8929#1 TTTCGACAG--ATCATCATCCTCATCGT-CATCGTC--TCTCTTATCTTTTCTACGGGTT 162 consensus_8929#2 TTTCGACAG--ATCATCATCCTCATCGTACATCGTA--TCTCTTATCTTTTCTACGGGTT 257 ** * * * * *** * * * * ** * * * * * ** * consensus_8929#0 ACGCGCCCAGCACGTCGTGCATGTAGAAGTGGAGGTGCGCCGACGCCGC---------GT 649 consensus_8929#3 ACGCGCCCA-CACGTCGTGCATGTAGAAGTGAAGGTGCGCCGACGCC-C---------GT 236 consensus_8929#1 AA-CGTA-G--ACGTCGAGCTCGAGCAGGTCAGGGC-GGATGGTCCTCC-------ACAG 210 consensus_8929#2 ANACGTACG--ACGTCGAGCTCGAGCAGGTCAGGGCAGGATGGTCCTCNCACAGGAACAG 315 * ** ****** ** * * ** ** * * * consensus_8929#0 CCGCCACCGGCGGCCCCGCGGCGAGCGCCGCGGCGAGGACGACGACGCAGAGCGGGACGA 709 consensus_8929#3 C-GCCACC-------------CGAGCCCCGCGA-GGANACGAC----CAGAGCGGNACGA 277 consensus_8929#1 CACGTACCCTCTCGC-CATCCTGAACTGCCCCGTGCCCCCCACC---ACCGTCAGCTCCC 266 consensus_8929#2 TACCCATCTACAGNCACATCCTGAAAGAACCCGNGCANACANAA---AACACCAGGACAG 372 * * ** * * * * * * consensus_8929#0 ACACCTTGGGCGCCATTTCAATCGGGATTAGATGGAGGAATGGATTGATGGTGAGGAGAG 769 consensus_8929#3 ACACCTTGGGCGCNATTTCAATCGGGATTTTTTC----CTCTGGCTACTAAGATGTTTCA 333 consensus_8929#1 GCACC-GCCGCGCCGTTTCGTTCGCGCCCGAGAGGTTCACCGAGCTCCGGCGAACGGCCG 325 consensus_8929#2 ATACCCAGCACACGA--------------------------------------------- 387 *** * * consensus_8929#0 GACTGCATTGATGCTGCTGATTATATAGCAACGGACACTGTAGTAGCTGCTGCGATTGCA 829 consensus_8929#3 GTTCGCCAGGTTGTCTCTTGC--------------------------------------- 354 consensus_8929#1 TAGCTGAGAGCGCCNTATTCGTAGCCGGGGACTGTTTTATATTTCCAAGTAGGGTCTTTT 385 consensus_8929#2 ------------------------------------------------------------ consensus_8929#0 TCTGTACAACTGTAGGACATAATTTTTGGTCCTGATTAGACTTTTTTCTTTCTTGTGTGT 889 consensus_8929#3 ------------------------------------------------------------ consensus_8929#1 ATTCGGATTACCCGTTCGACCTTGGAGGGGGGCCCGNTACCATTCGCCTATGTGAGTCTT 445 consensus_8929#2 ------------------------------------------------------------ consensus_8929#0 ATGGTGACAGGTTGTGGCCGTTGAGGTGTATGATTGTGATCTTCGCTGTACCTGTCTGAG 949 consensus_8929#3 ------------------------------------------------------------ consensus_8929#1 TAA--------------------------------------------------------- 448 consensus_8929#2 ------------------------------------------------------------ consensus_8929#0 TGACAGCAACGGTGGCCATGGATGCAGATCACATCAATTCCATTGGGAAATACTTTTCAG 1009 consensus_8929#3 ------------------------------------------------------------ consensus_8929#1 ------------------------------------------------------------ consensus_8929#2 ------------------------------------------------------------ consensus_8929#0 CCTTAAGAGGGATATCTTTGTCTCGCCTAACTGTAGAGGCCCAAGATGTAATTAATTTTC 1069 consensus_8929#3 ------------------------------------------------------------ consensus_8929#1 ------------------------------------------------------------ consensus_8929#2 ------------------------------------------------------------ consensus_8929#0 ATTCTTTTTCAGAGAAGGACATCCTCTCAAT 1100 consensus_8929#3 ------------------------------- consensus_8929#1 ------------------------------- consensus_8929#2 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||