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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1100 fasta sequence
[TTCAGTAAATTAAATATATAGTATATAAGAATTATTATTATACCCATCAGGTTCGCCCATGTCAAGCTTATTTTTTCACCGGACACACACACACCACAAGGATAAGCCTTTACCGGTACGACACCTGTGCAAGAACACGCCACGTCACACACATACACACGAACACAGATGCTGACTGGGCGAATGACGTGTCCGTTTTCGACAGATCATCATCCTCATCGTCATCGTCTCTCTTATCTTTTCTACGGGTTAACGTAGACGTCGAGCTCGAGCAGGTCAGGGCGGATGGTCCTCCACAGCACGTACCCTCTCGCCATCCTGAACTGCCCCGTGCCCCCCACCACCGTCAGCTCCCGCACCGCCGCGCCGGTGTCGTCGCGCCCGACGACGGTCACCGAGCTGCCGGCGAACGGGCCGGAGCTGAGAACGACGTTCATGGTGACCATCAGGTCCATGCTCCCCGTCGACGCCACGATGTACTGCCCCTGGGCGCGCCCCAGCACCGACGACGTCGCCGCGGGTCCCTCCGTCAGCACGTCGTCCATCACCACCGTGTTCCCGAACATGCCGCGCGGGCCCCGCACCACCTGCACCGCCGACGCGCCCAGCACGTCGTGCATGTAGAAGTGGAGGTGCGCCGACGCCGCGTCCGCCACCGGCGGCCCCGCGGCGAGCGCCGCGGCGAGGACGACGACGCAGAGCGGGACGAACACCTTGGGCGCCATTTCAATCGGGATTAGATGGAGGAATGGATTGATGGTGAGGAGAGGACTGCATTGATGCTGCTGATTATATAGCAACGGACACTGTAGTAGCTGCTGCGATTGCATCTGTACAACTGTAGGACATAATTTTTGGTCCTGATTAGACTTTTTTCTTTCTTGTGTGTATGGTGACAGGTTGTGGCCGTTGAGGTGTATGATTGTGATCTTCGCTGTACCTGTCTGAGTGACAGCAACGGTGGCCATGGATGCAGATCACATCAATTCCATTGGGAAATACTTTTCAGCCTTAAGAGGGATATCTTTGTCTCGCCTAACTGTAGAGGCCCAAGATGTAATTAATTTTCATTCTTTTTCAGAGAAGGACATCCTCTCAAT]
[-] EMBL AK062734 [TTCAGTAAATTAAATATATAGTATATAAGAATTATTATTATACCCATCAGGTTCGCCCATGTCAAGCTTATTTTTTCACCGGACACACACACACCACAAGGATAAGCCTTTACCGGTACGACACCTGTGCAAGAACACGCCACGTCACACACATACACACGAACACAGATGCTGACTGGGCGAATGACGTGTCCGTTTTCGACAGATCATCATCCTCATCGTCATCGTCTCTCTTATCTTTTCTACGGGTTAACGTAGACGTCGAGCTCGAGCAGGTCAGGGCGGATGGTCCTCCACAGCACGTACCCTCTCGCCATCCTGAACTGCCCCGTGCCCCCCACCACCGTCAGCTCCCGCACCGCCGCGCCGGTGTCGTCGCGCCCGACGACGGTCACCGAGCTGCCGGCGAACGGGCCGGAGCTGAGAACGACGTTCATGGTGACCATCAGGTCCATGCTCCCCGTCGACGCCACGATGTACTGCCCCTGGGCGCGCCCCAGCACCGACGACGTCGCCGCGGGTCCCTCCGTCAGCACGTCGTCCATCACCACCGTGTTCCCGAACATGCCGCGCGGGCCCCGCACCACCTGCACCGCCGACGCGCCCAGCACGTCGTGCATGTAGAAGTGGAGGTGCGCCGACGCCGCGTCCGCCACCGGCGGCCCCGCGGCGAGCGCCGCGGCGAGGACGACGACGCAGAGCGGGACGAACACCTTGGGCGCCATTTCAATCGGGATTAGATGGAGG ]
[+] EMBL AK119964 [ GGCGGATGGTCCTCCACAGCACGTACCCTCTCGCCATCCTGAACTGCCCCGTGCCCCCCACCACCGTCAGCTCCCGCACCGCCGCGCCGGTGTCGTCGCGCCCGACGACGGTCACCGAGCTGCCGGCGAACGGGCCGGAGCTGAGAACGACGTTCATGGTGACCATCAGGTCCATGCTCCCCGTCGACGCCACGATGTACTGCCCCTGGGCGCGCCCCAGCACCGACGACGTCGCCGCGGGTCCCTCCGTCAGCACGTCGTCCATCACCACCGTGTTCCCGAACATGCCGCGCGGGCCCCGCACCACCTGCACCGCCGACGCGCCCAGCACGTCGTGCATGTAGAAGTGGAGGTGCGCCGACGCCGCGTCCGCCACCGGCGGCCCCGCGGCGAGCGCCGCGGCGAGGACGACGACGCAGAGCGGGACGAACACCTTGGGCGCCATTTCAATCGGGATTAGATGGAGGAATGGATTGATGGTGAGGAGAGGACTGCATTGATGCTGCTGATTATATAGCAACGGACACTGTAGTAGCTGCTGCGATTGCATCTGTACAACTGTAGGACATAATTTTTGGTCCTGATTAGACTTTTTTCTTTCTTGTGTGTATGGTGACAGGTTGTGGCCGTTGAGGTGTATGATTGTGATCTTCGCTGTACCTGTCTGAGTGACAGCAACGGTGGCCATGGATGCAGATCACATCAATTCCATTGGGAAATACTTTTCAGCCTTAAGAGGGATATCTTTGTCTCGCCTAACTGTAGAGGCCCAAGATGTAATTAATTTTCATTCTTTTTCAGAGAAGGACATCCTCTCAAT]
[-] EMBL CF195962 [ nacncnnnCAGCACGTCGTGCATGTAGAAGTGGAGGTGCGCCGACGCCGCGTCCGCCACCGGCGGCCCCGCGGCGAGCGCCGCGGCGAGGACGACGACGCAGAGCGGGACGAACACCTTGGGCGCCnnnnnaa ]
consensusID : consensus_8929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence
[CACACCACAAGGATAAGCCTTTACCGGTACGACACCTGTGCAAGAACACGCCACGTCACACACATACACACGAACACAGATGCTGACTGGGCGAATGACGTGTCCGTTTTCGACAGATCATCATCCTCATCGTCATCGTCTCTCTTATCTTTTCTACGGGTTAACGTAGACGTCGAGCTCGAGCAGGTCAGGGCGGATGGTCCTCCACAGCACGTACCCTCTCGCCATCCTGAACTGCCCCGTGCCCCCCACCACCGTCAGCTCCCGCACCGCCGCGCCGTTTCGTTCGCGCCCGAGAGGTTCACCGAGCTCCGGCGAACGGCCGTAGCTGAGAGCGCCNTATTCGTAGCCGGGGACTGTTTTATATTTCCAAGTAGGGTCTTTTATTCGGATTACCCGTTCGACCTTGGAGGGGGGCCCGNTACCATTCGCCTATGTGAGTCTTTAA]
[+] EMBL OS37943 [CACACCACAAGGATAAGCCTTTACCGGTACGACACCTGTGCAAGAACACGCCACGTCACACACATACACACGAACACAGATGCTGACTGGGCGAATGACGTGTCCGTTTTCGACAGATCATCATCCTCATCGTCATCGTCTCTCTTATCTTTTCTACGGGTTAACGTAGACGTCGAGCTCGAGCAGGTCAGGGCGGATGGTCCTCCACAGCACGTACCCTCTCGCCATCCTGAACTGCCCCGTGCCCCCCACCACCGTCAGCTCCCGCACCGCCGCGCCGTTTCGTTCGCGCCCGAGAGGTTCACCGAGCTCCGGCGAACGGCCGTAGCTGAGAGCGCCNTATTCGTAGCCGGGGACTGTTTTATATTTCCAAGTAGGGTCTTTTATTCGGATTACCCGTTCGACCTTGGAGGGGGGCCCGNTACCATTCGCCTATGTGAGTCTTTAA]
consensusID : consensus_8929#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence
[TTTTTTTCAGTAANATGAAATATATAGTATATAAGAATTATTATTATACCCATCAGGTTCGCCATGTCAAGCTTATTTTTCACCGGACACACACACACCACAAGGATAAGCCTTTACCGGTACGACACCTGTGCAATGAACACGCCACGTCACACACATACACACGGACACAGATGCTGACTGGGCGAATGACGTGTCCGTTTTCGACAGATCATCATCCTCATCGTACATCGTATCTCTTATCTTTTCTACGGGTTANACGTACGACGTCGAGCTCGAGCAGGTCAGGGCAGGATGGTCCTCNCACAGGAACAGTACCCATCTACAGNCACATCCTGAAAGAACCCGNGCANACANAAAACACCAGGACAGATACCCAGCACACGA]
[-] EMBL BI807076 [TTTTTTTCAGTAANATGAAATATATAGTATATAAGAATTATTATTATACCCATCAGGTTCGCCATGTCAAGCTTATTTTTCACCGGACACACACACACCACAAGGATAAGCCTTTACCGGTACGACACCTGTGCAATGAACACGCCACGTCACACACATACACACGGACACAGATGCTGACTGGGCGAATGACGTGTCCGTTTTCGACAGATCATCATCCTCATCGTACATCGTATCTCTTATCTTTTCTACGGGTTANACGTACGACGTCGAGCTCGAGCAGGTCAGGGCAGGATGGTCCTCNCACAGGAACAGTACCCATCTACAGNCACATCCTGAAAGAACCCGNGCANACANAAAACACCAGGACAGATACCCAGCACACGA]
consensusID : consensus_8929#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence
[GACGGCCGAGCTGAGAACGACGTTATGGTGACCATCAGGTCCATGCTCCCCGTCGACGCCACGATGTACTGCCACTGGCGCGCCCCAGCACCGACGACGTCGCCGCGGGTCCCATCCGTCAGCACGTCGTCAATCACCACCGTGTTCCCGAACATGCCGCGCGGGCCCCGCACCACCTGCACCGCCGACGCGCCCACACGTCGTGCATGTAGAAGTGAAGGTGCGCCGACGCCCGTCGCCACCCGAGCCCCGCGAGGANACGACCAGAGCGGNACGAACACCTTGGGCGCNATTTCAATCGGGATTTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGTTGTCTCTTGC]
[-] EMBL OS38000 [GACGGCCGAGCTGAGAACGACGTTATGGTGACCATCAGGTCCATGCTCCCCGTCGACGCCACGATGTACTGCCACTGGCGCGCCCCAGCACCGACGACGTCGCCGCGGGTCCCATCCGTCAGCACGTCGTCAATCACCACCGTGTTCCCGAACATGCCGCGCGGGCCCCGCACCACCTGCACCGCCGACGCGCCCACACGTCGTGCATGTAGAAGTGAAGGTGCGCCGACGCCCGTCGCCACCCGAGCCCCGCGAGGANACGACCAGAGCGGNACGAACACCTTGGGCGCNATTTCAATCGGGATTTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGTTGTCTCTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8929#0 TTCAGTAAATTAAATATATAGTATATAAGAATTATTATTATACCCATCAGGTTCGCCCAT 60
consensus_8929#3 ------------------------------------------------------------
consensus_8929#1 ------------------------------------------------------------
consensus_8929#2 ------------------------------------------------------------
consensus_8929#0 GTCAAGCTTATTTTTTCACCGGACACACACACACCACAAGGATAAGCCTTTACCGGTACG 120
consensus_8929#3 ------------------------------------------------------------
consensus_8929#1 ------------------------------------------------------------
consensus_8929#2 ------------------------------------------------------------
consensus_8929#0 ACACCTGTGCAAGAACACGCCACGTCACACACATACACACGAACACAGATGCTGACTGGG 180
consensus_8929#3 ------------------------------------------------------------
consensus_8929#1 ------------------------------------------------------------
consensus_8929#2 ------------------------------------------------------------
consensus_8929#0 CGAATGACGTGTCCGTTTTCGACAGATCATCATCCTCATCGTCATCGTCTCTCTTATCTT 240
consensus_8929#3 ------------------------------------------------------------
consensus_8929#1 ------------------------------------------------------------
consensus_8929#2 ------------------------------------------------------------
consensus_8929#0 TTCTACGGGTTAACGTAGACGTCGAGCTCGAGCAGGTCAGGGCGGATGGTCCTCCACAGC 300
consensus_8929#3 ------------------------------------------------------------
consensus_8929#1 ------------------------------------------------------------
consensus_8929#2 ------------------------------------------------------------
consensus_8929#0 ACGTACCCTCTCGCCATCCTGAACTGCCCCGTGCCCCCCACCACCGTCAGCTCCCGCACC 360
consensus_8929#3 ------------------------------------------------------------
consensus_8929#1 ------------------------------------------------------------
consensus_8929#2 ---------------------------------------TTTTTTTCAGTAANATGAAAT 21
consensus_8929#0 GCCGCGCCGGTGTCGTCGCGCCCGACGACGGTCACCGAGCTGCCGGCGAACGGGCCGGAG 420
consensus_8929#3 ------------------------------------------------GACGG--CCGAG 10
consensus_8929#1 ------------------------------------------------------------
consensus_8929#2 ATATAGTATATAAGAATTATTATTATACCCATCAGGTTCGCCATGTCAAGCTTATTTTTC 81
consensus_8929#0 CTGAGAACGACGTTCATGGTGACCATCAGGTCCATGCTCCCCGTCGACGCCACGATGTAC 480
consensus_8929#3 CTGAGAACGACGTT-ATGGTGACCATCAGGTCCATGCTCCCCGTCGACGCCACGATGTAC 69
consensus_8929#1 ------------CACACCACAAGGATAAGCCTTTACCGGTACGACACCTGTGCAA-GAAC 47
consensus_8929#2 ACCGGACACACACACACCACAAGGATAAGCCTTTACCGGTACGACACCTGTGCAATGAAC 141
* * ** ** * ** * * * * * **
consensus_8929#0 -TGCCCCTGGGCGCGCCCCAGCACCGACGACGTCGCCGCGGGTCCC-TCCGTCAGCACGT 538
consensus_8929#3 -TGCCACTGG-CGCGCCCCAGCACCGACGACGTCGCCGCGGGTCCCATCCGTCAGCACGT 127
consensus_8929#1 ACGCCACGTCACACACATACACACGAACACAGATGCTGACTGGGCGAATGACGTGTCCGT 107
consensus_8929#2 ACGCCACGTCACACACATACACACGGACACAGATGCTGACTGGGCGAATGACGTGTCCGT 201
*** * * * * *** ** * ** * * * * ***
consensus_8929#0 CGTCCATCACCACCGTGTTCCCGAACATGCCGCGCGGGCCCCGCACCACCTGCACCGCCG 598
consensus_8929#3 CGTCAATCACCACCGTGTTCCCGAACATGCCGCGCGGGCCCCGCACCACCTGCACCGCCG 187
consensus_8929#1 TTTCGACAG--ATCATCATCCTCATCGT-CATCGTC--TCTCTTATCTTTTCTACGGGTT 162
consensus_8929#2 TTTCGACAG--ATCATCATCCTCATCGTACATCGTA--TCTCTTATCTTTTCTACGGGTT 257
** * * * * *** * * * * ** * * * * * ** *
consensus_8929#0 ACGCGCCCAGCACGTCGTGCATGTAGAAGTGGAGGTGCGCCGACGCCGC---------GT 649
consensus_8929#3 ACGCGCCCA-CACGTCGTGCATGTAGAAGTGAAGGTGCGCCGACGCC-C---------GT 236
consensus_8929#1 AA-CGTA-G--ACGTCGAGCTCGAGCAGGTCAGGGC-GGATGGTCCTCC-------ACAG 210
consensus_8929#2 ANACGTACG--ACGTCGAGCTCGAGCAGGTCAGGGCAGGATGGTCCTCNCACAGGAACAG 315
* ** ****** ** * * ** ** * * *
consensus_8929#0 CCGCCACCGGCGGCCCCGCGGCGAGCGCCGCGGCGAGGACGACGACGCAGAGCGGGACGA 709
consensus_8929#3 C-GCCACC-------------CGAGCCCCGCGA-GGANACGAC----CAGAGCGGNACGA 277
consensus_8929#1 CACGTACCCTCTCGC-CATCCTGAACTGCCCCGTGCCCCCCACC---ACCGTCAGCTCCC 266
consensus_8929#2 TACCCATCTACAGNCACATCCTGAAAGAACCCGNGCANACANAA---AACACCAGGACAG 372
* * ** * * * * * *
consensus_8929#0 ACACCTTGGGCGCCATTTCAATCGGGATTAGATGGAGGAATGGATTGATGGTGAGGAGAG 769
consensus_8929#3 ACACCTTGGGCGCNATTTCAATCGGGATTTTTTC----CTCTGGCTACTAAGATGTTTCA 333
consensus_8929#1 GCACC-GCCGCGCCGTTTCGTTCGCGCCCGAGAGGTTCACCGAGCTCCGGCGAACGGCCG 325
consensus_8929#2 ATACCCAGCACACGA--------------------------------------------- 387
*** * *
consensus_8929#0 GACTGCATTGATGCTGCTGATTATATAGCAACGGACACTGTAGTAGCTGCTGCGATTGCA 829
consensus_8929#3 GTTCGCCAGGTTGTCTCTTGC--------------------------------------- 354
consensus_8929#1 TAGCTGAGAGCGCCNTATTCGTAGCCGGGGACTGTTTTATATTTCCAAGTAGGGTCTTTT 385
consensus_8929#2 ------------------------------------------------------------
consensus_8929#0 TCTGTACAACTGTAGGACATAATTTTTGGTCCTGATTAGACTTTTTTCTTTCTTGTGTGT 889
consensus_8929#3 ------------------------------------------------------------
consensus_8929#1 ATTCGGATTACCCGTTCGACCTTGGAGGGGGGCCCGNTACCATTCGCCTATGTGAGTCTT 445
consensus_8929#2 ------------------------------------------------------------
consensus_8929#0 ATGGTGACAGGTTGTGGCCGTTGAGGTGTATGATTGTGATCTTCGCTGTACCTGTCTGAG 949
consensus_8929#3 ------------------------------------------------------------
consensus_8929#1 TAA--------------------------------------------------------- 448
consensus_8929#2 ------------------------------------------------------------
consensus_8929#0 TGACAGCAACGGTGGCCATGGATGCAGATCACATCAATTCCATTGGGAAATACTTTTCAG 1009
consensus_8929#3 ------------------------------------------------------------
consensus_8929#1 ------------------------------------------------------------
consensus_8929#2 ------------------------------------------------------------
consensus_8929#0 CCTTAAGAGGGATATCTTTGTCTCGCCTAACTGTAGAGGCCCAAGATGTAATTAATTTTC 1069
consensus_8929#3 ------------------------------------------------------------
consensus_8929#1 ------------------------------------------------------------
consensus_8929#2 ------------------------------------------------------------
consensus_8929#0 ATTCTTTTTCAGAGAAGGACATCCTCTCAAT 1100
consensus_8929#3 -------------------------------
consensus_8929#1 -------------------------------
consensus_8929#2 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||