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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8930#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 910 fasta sequence
[GAACACTCGAGGCGTTATCCATGGCCGCCGCTGCTTCCTCCGCTGTACTCCTCCTCCCAAACTCGCGAGCTCCCGCCGCGCTGTCGCGGAGGAGGGCTCCGGTTCCGAGGAGGGGCTTCGTTGTTGGGTTCGAGGGGCGGAGTAGGAGGGGAGCCGCGGGGACCGTGCGAGCTTGCTTCAATCCTCCCGGGGACGAACGCATCCTCCGGGAGGCCTTGAAGGAGCCAGTTGCATTCATGGGTGGTGTGTTTGCTGGCCTATTGAGGCTTGACCTGAATGAGGATCCTCTCAAGGAATGGATCACTAGGACGGTAGAGGCTTCTGGAGTTGCTGAGGATAGCCGAACCGATGAATCAAGTGAGGGATCTCAAAATGATGCGCCCCAACAAATTGAGATTGAGTGAGGGGCTAAGCAGGTTGTTGGGAGGTGCTTTCCAACTATCTTAATCAGTAATGATGGATAGCAAGACTGGTCTGCAGAATATCCTTTGCCTGTAAGTTTCATGATTCCATCTTGCAGGTTGTTATGGACCTTAAGGTATGAAATACTTCATCCGTTTCACAATATAAGACTTTGTAGCATTGGCTACATTCATATAGATGCTAATGAATCTAGGCATACATATGTGTCTAGATTCATTAACATCTATATGAATATGGCTAATGCAAAGTAATATGAAACGGAGGGAGTAGCTGAGTAGCTGGCAATCCAGAACCGTAAGCTGTTATTGCTGATTTGAATCCAAAGCCACTGACGTGAC-ACAAGTAATGAATC-AATGCAGCTGCTAACTACTTGATGATGACTTCCCCTTGTTGGAAAAAGTTTTGTCTTTGAATGCTGACGAAATGTGGGGAATTCACCTCCATAACCTTTCACTGAAAAATGGAATTATCATGTGAACTCAAAAAA]
[+] EMBL AK065957 [GAACACTCGAGGCGTTATCCATGGCCGCCGCTGCTTCCTCCGCTGTACTCCTCCTCCCAAACTCGCGAGCTCCCGCCGCGCTGTCGCGGAGGAGGGCTCCGGTTCCGAGGAGGGGCTTCGTTGTTGGGTTCGAGGGGCGGAGTAGGAGGGGAGCCGCGGGGACCGTGCGAGCTTGCTTCAATCCTCCCGGGGACGAACGCATCCTCCGGGAGGCCTTGAAGGAGCCAGTTGCATTCATGGGTGGTGTGTTTGCTGGCCTATTGAGGCTTGACCTGAATGAGGATCCTCTCAAGGAATGGATCACTAGGACGGTAGAGGCTTCTGGAGTTGCTGAGGATAGCCGAACCGATGAATCAAGTGAGGGATCTCAAAATGATGCGCCCCAACAAATTGAGATTGAGTGAGGGGCTAAGCAGGTTGTTGGGAGGTGCTTTCCAACTATCTTAATCAGTAATGATGGATAGCAAGACTGGTCTGCAGAATATCCTTTGCCTGTAAGTTTCATGATTCCATCTTGCAGGTTGTTATGGACCTTAAGGTATGAAATACTTCATCCGTTTCACAATATAAGACTTTGTAGCATTGGCTACATTCATATAGATGCTAATGAATCTAGGCATACATATGTGTCTAGATTCATTAACATCTATATGAATATGGCTAATGCAAAGTAATATGAAACGGAGGGAGTAGCTGAGTAGCTGGCAATCCAGAACCGTAAGCTGTTATTGCTGATTTGAATCCAAAGCCACTGACGTGAC ACAAGTAATGAATC AATGCA ]
[+] EMBL CB097123 [ GTTGTTGGGAGGTGCTTTCCAACTATCTTAATCAGTAATGATGGATAGCAAGACTGGTCTGCAGAATATCCTTTGCCTGTAAGTTTCATGATTCCATCTTGCAGGTTGTTATGGACCTTAAGGTATGAAATACTTCATCCGTTTCACAATATAAGACTTTGTAGCATTGGCTACATTCATATAGATGCTAATGAATCTAGGCATACATATGTGTCTAGATTCATTAACATCTATATGAATATGGCTAATGCAAAGTAATATGAAACGGAGGGAGTAGCTGAGTAGCTGGCAATCCAGAACCGTAAGCTGTTATTGCTGATTTGAATCCAAAGCCACTGACGTGAC ACAAGTnaaaa ]
[+] EMBL BI802300 [ tccGCTGAGTAGCT GCAATCCAGAACCGTAAGCTGTTATTGCTGATTTGAATCCAAAGCCACTGACGTGACAACAAGTAATGAATCAAATGCAGCTGCTAACTACTTGATGATGACTTCCCCTTGTTGGAAAAAGTTTTGTCTTTGAATGCTGACGAAATGTGGGGAATTCACCTCCATAACCTTTCACTGAAAAATGGAATTATCATGTGAACTCAAAAAA]
consensusID : consensus_8930#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 683 fasta sequence
[GGNTCGTAGCTTGATTGGTGNGCCGGACGAGACAAGGGGGAACACCCGAGGCGTTATCCATGGCCGCCGCTGCTTCCTCCGCTGTACTCCTCCTCCCAAACTCGCGAGCTCCCGCCGCGCTGTCGCGGAGGAGGGCTCCGGTTCCGAGGAGGGGCTTCGTTGTTGGGTTCGAGGGGCGGAGTAGGAGGGGAGCCGCGGGGACCGTGCGAGCTTGCTTCAATCCTCCCGGGGACGAACGCATCCTCCGGGAGGCCTTGAAGGAGCCAGTTGCATTCATGGGTGGTGTGTTTGCTGGCCTATTGAGGCTTGACCTGAATGAGGATCCTCTCAAGGAATGGATCACTAGGACGGTAGAGGCTTCTGGAGTTGCTGAGGATAGCCGAACCGATGAATCAAGTGAGGGATCTCAAAATGATGCGCCCCAACAAATTGAGATTGAGTGAGGTGCATTAGTTGACTTTGCCATCTTTTACGGTCTTGTAATTTATACCGAATATTTGTAATATTTATGTAATAAAAATGCTTCTCCCAGTTTTGAATTTTCTTTGTCTTTGTGTTGTAACTTGAAGTAAAAAAAATCGGTCTGTCATTGATTTTTTTAAGCTGTATTTTCCTTACTGGGTAAAAGCACCACTAATAGGTTACTATGGAAAATGTTAATTCAAGTGCAAAAGACAGTCTTA]
[+] EMBL CA767438 [GGNTCGTAGCTTGATTGGTGNGCCGGACGAGACAAGGGGGAACACCCGAGGCGTTATCCATGGCCGCCGCTGCTTCCTCCGCTGTACTCCTCCTCCCAAACTCGCGAGCTCCCGCCGCGCTGTCGCGGAGGAGGGCTCCGGTTCCGAGGAGGGGCTTCGTTGTTGGGTTCGAGGGGCGGAGTAGGAGGGGAGCCGCGGGGACCGTGCGAGCTTGCTTCAATCCTCCCGGGGACGAACGCATCCTCCGGGAGGCCTTGAAGGAGCCAGTTGCATTCATGGGTGGTGTGTTTGCTGGCCTATTGAGGCTTGACCTGAATGAGGATCCTCTCAAGGAATGGATCACTAGGACGGTAGAGGCTTCTGGAGTTGCTGAGGATAGCCGAACCGATGAATCAAGTGAGGGATCTCAAAATGATGCGCCCCAACAAATTGAGATTGAGTGAGGTGCATTAGTTGACTTTGCCATCTTTTACGGTCTTGTAATTTATACCGAATATTTGTAATATTTATGTAATAAAAATGCTTCTCCCAGTTTTGAATTTTCTTTGTC ]
[+] EMBL CB684983 [ CTCCCGCCGCGCTGTCGCGGAGGAGGGCTCCGGTTCCGAGGAGGGGCTTCGCTGTTGGGTTCCAGGGGCGGAGTAGGAGGGGAGCCGCGGGGACCGTGCGAGCTTGCTTCAATCCTCCCGGGGACGAACGCATCCTCCGGGAGGCCTTGAAGGAGCCAGTTGCATTCATGGGTGGTGTGTTTGCTGGCCTATTGAGGCTTGACCTGAATGAGGATCCTCTCAAGGAATGGATCACTAGGACGGTAGAGGCTTCTGGAGTTGCTGAGGATAGCCGAACCGATGAATCCAGTGAGGGATCTCAGAATGATGCGCCCCAACAAATTGAGATTGAGTGAGGTGCATTAGTTGACTTTGCCATCTTTTACGGTCTTGTAATTTATACCGAATATGTGTAATATTTATGTAATAAAAATGCTTCTCCCAGTTTTGAATTTTCTTTGTCTTTGTGTTGTAACTTGAAGTAAAAAAAATCGGTCTGTCATTGATTTTTTTAAGCTGTATTTTCCTTACTGGGTAAAAGCACCACTAATAGGTTACTATGGAAAATGTTAATTCAAGTGCAAAAGACAGTCTTA]
consensusID : consensus_8930#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence
[GGCCGCCGCTGCTTCCTCCGCTGTACTCCTCCTCCCAAACTCGCGAGCTCCCGCCGCGCTGTCGCGGAGGAGGGCTCCGGTTCCGAGGAGGGGCTTCGTTGTTGGGTTCGAGGGGCGGAGTAGGAGGGGAGCCGCGGGGACCGTGCGAGCTTGCTTCAATCCTCCCGGGGACGAACGCATCCTCCGGGAGGCCTTGAAGGGGCTAAGCAGGTTGTTGGGAGGTGCTTTCCAACTATCTTAATCAGTAATGATGGATAGCAAGACTGGTCTGCAGAATATCCTTTGCCTGTAACATGGTTTGGCTTTCTTGCCTTCCTGATGAAGCTTGCTTCTGGAATCCGGACATGCTGATTAAATGCATACCTTTTCTTATATACATTTATGTATGAATATGACTGAAAGCTATCCTAGTCCTACNATCCTATGCATGAGTGTGGTTGAATGATCTCGGTAGCAGGGTTTACCTTACCGCGCGGTTACCGGGCTTACCACGGTAACCTCCTTAAATTCANATAAATTTTTAAAATAATTTGAATTTTTGATAAATTTTGCACGGTTTTTCACGGTTACCGCGGTTATCGGGCTTACCGCCGGGGCGCGNGTAC]
[+] EMBL CA754119 [GGCCGCCGCTGCTTCCTCCGCTGTACTCCTCCTCCCAAACTCGCGAGCTCCCGCCGCGCTGTCGCGGAGGAGGGCTCCGGTTCCGAGGAGGGGCTTCGTTGTTGGGTTCGAGGGGCGGAGTAGGAGGGGAGCCGCGGGGACCGTGCGAGCTTGCTTCAATCCTCCCGGGGACGAACGCATCCTCCGGGAGGCCTTGAAGGGGCTAAGCAGGTTGTTGGGAGGTGCTTTCCAACTATCTTAATCAGTAATGATGGATAGCAAGACTGGTCTGCAGAATATCCTTTGCCTGTAACATGGTTTGGCTTTCTTGCCTTCCTGATGAAGCTTGCTTCTGGAATCCGGACATGCTGATTAAATGCATACCTTTTCTTATATACATTTATGTATGAATATGACTGAAAGCTATCCTAGTCCTACNATCCTATGCATGAGTGTGGTTGAATGATCTCGGTAGCAGGGTTTACCTTACCGCGCGGTTACCGGGCTTACCACGGTAACCTCCTTAAATTCANATAAATTTTTAAAATAATTTGAATTTTTGATAAATTTTGCACGGTTTTTCACGGTTACCGCGGTTATCGGGCTTACCGCCGGGGCGCGNGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8930#0 ---------------------------------------GAACACTCGAGGCGTTATCCA 21
consensus_8930#1 GGNTCGTAGCTTGATTGGTGNGCCGGACGAGACAAGGGGGAACACCCGAGGCGTTATCCA 60
consensus_8930#2 ------------------------------------------------------------
consensus_8930#0 TGGCCGCCGCTGCTTCCTCCGCTGTACTCCTCCTCCCAAACTCGCGAGCTCCCGCCGCGC 81
consensus_8930#1 TGGCCGCCGCTGCTTCCTCCGCTGTACTCCTCCTCCCAAACTCGCGAGCTCCCGCCGCGC 120
consensus_8930#2 -GGCCGCCGCTGCTTCCTCCGCTGTACTCCTCCTCCCAAACTCGCGAGCTCCCGCCGCGC 59
***********************************************************
consensus_8930#0 TGTCGCGGAGGAGGGCTCCGGTTCCGAGGAGGGGCTTCGTTGTTGGGTTCGAGGGGCGGA 141
consensus_8930#1 TGTCGCGGAGGAGGGCTCCGGTTCCGAGGAGGGGCTTCGTTGTTGGGTTCGAGGGGCGGA 180
consensus_8930#2 TGTCGCGGAGGAGGGCTCCGGTTCCGAGGAGGGGCTTCGTTGTTGGGTTCGAGGGGCGGA 119
************************************************************
consensus_8930#0 GTAGGAGGGGAGCCGCGGGGACCGTGCGAGCTTGCTTCAATCCTCCCGGGGACGAACGCA 201
consensus_8930#1 GTAGGAGGGGAGCCGCGGGGACCGTGCGAGCTTGCTTCAATCCTCCCGGGGACGAACGCA 240
consensus_8930#2 GTAGGAGGGGAGCCGCGGGGACCGTGCGAGCTTGCTTCAATCCTCCCGGGGACGAACGCA 179
************************************************************
consensus_8930#0 TCCTCCGGGAGGCCTTGAAGGAGCCAGTTGCATTCATGGGTGGTGTGTTT--GCTGGCCT 259
consensus_8930#1 TCCTCCGGGAGGCCTTGAAGGAGCCAGTTGCATTCATGGGTGGTGTGTTT--GCTGGCCT 298
consensus_8930#2 TCCTCCGGGAGGCCTTGAAGGGGCTAAGCAGGTTGTTGGGAGGTGCTTTCCAACTATCTT 239
********************* ** * ** **** **** ** ** * *
consensus_8930#0 ATTGAGGCTTGACCTGAATGAGGATCCTCTCAAGGAATGG-----ATCACTAGGACGGTA 314
consensus_8930#1 ATTGAGGCTTGACCTGAATGAGGATCCTCTCAAGGAATGG-----ATCACTAGGACGGTA 353
consensus_8930#2 AATCAGTAATGATGGATAGCAAGACTGGTCTGCAGAATATCCTTTGCCTGTAACATGGTT 299
* * ** *** * * ** **** * ** * ***
consensus_8930#0 GAGGCTTCTGGAGTTGCTGAGGATAGCCGAACCGATGAATCAAGTGAGGGATCTCAAAAT 374
consensus_8930#1 GAGGCTTCTGGAGTTGCTGAGGATAGCCGAACCGATGAATCAAGTGAGGGATCTCAAAAT 413
consensus_8930#2 TGGCTTTCTTGCCTTCCTGATGA-AGCTTGCTTCTGGAATCCGGACATGCTGATTAAATG 358
* **** * ** **** ** *** ***** * * * * ***
consensus_8930#0 GATGCGCCCCAACAAATTGAGATTGAGTGAGGGGCTAAGCAGGTTGTTGGGAGGTGCTTT 434
consensus_8930#1 GATGCGCCCCAACAAATTGAGATTGAGTGAGGTGC--ATTAGTTGACTTTGCCATCTTTT 471
consensus_8930#2 CATACCTTTTCTTATAT--ACATTTATGTATGAATATGACTGAAAGCTATCCTA-GTCCT 415
** * * ** * *** * * * * * *
consensus_8930#0 CCAACTATCTTAATCAGTAATGATGGATAGCAAGACTGGTCTGCAGAATATCCTTTGCCT 494
consensus_8930#1 ACGGTC-TTGTAATTTATACCGAATATTTGTAATATTTATGTAATAAAAATGCTTCTCCC 530
consensus_8930#2 ACNATCCTATGCATGAGTGTGGTTGAATGAT----CTCGGTAGCAGGGTTTACCTTACCG 471
* * ** * * * * * * * **
consensus_8930#0 GTAAGTT-TCATGATTCCATCTTGCAGGTTGTTA--TGGACCTTAAGGTATGAAATACTT 551
consensus_8930#1 ---AGTT-TTGAATTTTCTTTGTCT---TTGTGT--TGTAACTTGAAGTAAAAAA-AATC 580
consensus_8930#2 CGCGGTTACCGGGCTTACCACGGTAACCTCCTTAAATTCANATAAATTTTTAAAATAATT 531
*** ** * * * * * * * * *** * *
consensus_8930#0 CA--TCCGT--TTCACAATATAAGACTTTGTAGCATTGGCTACATTCATATAGATGCTAA 607
consensus_8930#1 GG--TCTGTCATTGATTTTTTTAAGCTGTATTTTCCTTACTGGGTAAAAGCAC-CACTAA 637
consensus_8930#2 TGAATTTTTGATAAATTTTGCACGGTTTTTCACGGTTACCGCGGTTATCGGGCTTACCGC 591
* * * * * * * * * * *
consensus_8930#0 TGAAT--CTAGGCATACATATGTGTCTAGATTCATTA-ACATCTATATGAATATGGCTAA 664
consensus_8930#1 TAGGTTACTATGGAAA-ATGTTAATTCAAGTGCAAAAGACAGTCTTA------------- 683
consensus_8930#2 CGGGG---CGCGNGTAC------------------------------------------- 605
* *
consensus_8930#0 TGCAAAGTAATATGAAACGGAGGGAGTAGCTGAGTAGCTGGCAATCCAGAACCGTAAGCT 724
consensus_8930#1 ------------------------------------------------------------
consensus_8930#2 ------------------------------------------------------------
consensus_8930#0 GTTATTGCTGATTTGAATCCAAAGCCACTGACGTGACACAAGTAATGAATCAATGCAGCT 784
consensus_8930#1 ------------------------------------------------------------
consensus_8930#2 ------------------------------------------------------------
consensus_8930#0 GCTAACTACTTGATGATGACTTCCCCTTGTTGGAAAAAGTTTTGTCTTTGAATGCTGACG 844
consensus_8930#1 ------------------------------------------------------------
consensus_8930#2 ------------------------------------------------------------
consensus_8930#0 AAATGTGGGGAATTCACCTCCATAACCTTTCACTGAAAAATGGAATTATCATGTGAACTC 904
consensus_8930#1 ------------------------------------------------------------
consensus_8930#2 ------------------------------------------------------------
consensus_8930#0 AAAAAA 910
consensus_8930#1 ------
consensus_8930#2 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||